Wall clock time and date at job start Tue Mar 31 2020 13:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35520 * 116.99570 * 2 1 4 4 C 1.38822 * 120.89740 * 0.20369 * 3 2 1 5 5 C 1.38711 * 119.19746 * 180.23671 * 4 3 2 6 6 O 1.35525 * 119.47405 * 179.78404 * 5 4 3 7 7 N 1.32591 * 121.05600 * 359.80206 * 5 4 3 8 8 C 1.31612 * 121.97807 * 359.97438 * 7 5 4 9 9 C 1.39544 * 120.66898 * 359.97438 * 8 7 5 10 10 C 1.47340 * 120.55831 * 180.02562 * 9 8 7 11 11 O 1.21618 * 120.00178 * 204.91902 * 10 9 8 12 12 N 1.34780 * 119.99765 * 24.91062 * 10 9 8 13 13 C 1.46502 * 120.00198 * 1.95752 * 12 10 9 14 14 C 1.46508 * 119.99803 * 181.95614 * 12 10 9 15 15 H 1.08998 * 110.77592 * 1.78820 * 14 12 10 16 16 C 1.55154 * 110.71733 * 125.02383 * 14 12 10 17 17 C 1.55128 * 101.48328 * 82.69888 * 16 14 12 18 18 N 1.47424 * 104.72600 * 37.29081 * 17 16 14 19 19 C 1.36934 * 125.65027 * 155.81843 * 18 17 16 20 20 H 1.07996 * 120.00133 * 190.57600 * 19 18 17 21 21 C 1.38816 * 119.99930 * 10.57538 * 19 18 17 22 22 N 1.31628 * 119.99950 * 9.14745 * 21 19 18 23 23 Si 1.86799 * 120.00063 * 189.14391 * 21 19 18 24 24 H 1.48497 * 109.46930 * 265.00846 * 23 21 19 25 25 H 1.48497 * 109.47078 * 25.01033 * 23 21 19 26 26 H 1.48504 * 109.46861 * 145.00994 * 23 21 19 27 27 C 1.47016 * 108.70093 * 335.55474 * 18 17 16 28 28 H 1.08995 * 109.47431 * 300.00072 * 1 2 3 29 29 H 1.08998 * 109.47292 * 60.00493 * 1 2 3 30 30 H 1.09006 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.39917 * 0.03882 * 4 3 2 32 32 H 0.96695 * 113.99771 * 270.02690 * 6 5 4 33 33 H 1.07998 * 119.66816 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.46564 * 264.15410 * 13 12 10 35 35 H 1.08999 * 109.46571 * 24.15394 * 13 12 10 36 36 H 1.08991 * 109.46829 * 144.15149 * 13 12 10 37 37 H 1.08998 * 111.00008 * 200.93443 * 16 14 12 38 38 H 1.08995 * 111.00972 * 324.74951 * 16 14 12 39 39 H 1.09004 * 110.49370 * 278.44966 * 17 16 14 40 40 H 1.08999 * 110.34275 * 156.05840 * 17 16 14 41 41 H 0.96993 * 119.99961 * 179.97438 * 22 21 19 42 42 H 1.08997 * 109.88415 * 120.70192 * 27 18 17 43 43 H 1.09003 * 109.88483 * 241.71343 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3063 2.3834 0.0042 5 6 1.9723 3.6002 -0.0009 6 8 1.2576 4.7516 -0.0013 7 7 3.2971 3.6548 -0.0059 8 6 4.0395 2.5681 -0.0056 9 6 3.4500 1.3033 0.0004 10 6 4.2835 0.0883 0.0013 11 8 3.8382 -0.9549 -0.4376 12 7 5.5394 0.1330 0.4883 13 6 6.0610 1.3788 1.0561 14 6 6.3830 -1.0642 0.4499 15 1 5.8590 -1.8912 -0.0293 16 6 7.7223 -0.7688 -0.2755 17 6 8.5571 -0.1298 0.8652 18 7 8.1767 -0.8822 2.0746 19 6 8.9404 -1.0184 3.2030 20 1 8.6535 -1.7255 3.9672 21 6 10.0836 -0.2477 3.3645 22 7 10.3376 0.7362 2.5279 23 14 11.2613 -0.6067 4.7693 24 1 10.9364 0.2690 5.9237 25 1 11.1295 -2.0293 5.1745 26 1 12.6544 -0.3453 4.3264 27 6 6.8388 -1.4567 1.8710 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2269 2.3513 0.0082 32 1 1.0468 5.0834 -0.8847 33 1 5.1159 2.6560 -0.0102 34 1 6.6289 1.9147 0.2957 35 1 5.2311 1.9992 1.3944 36 1 6.7108 1.1490 1.9004 37 1 8.1839 -1.6891 -0.6335 38 1 7.5764 -0.0635 -1.0936 39 1 8.3039 0.9243 0.9790 40 1 9.6224 -0.2456 0.6658 41 1 11.1362 1.2750 2.6410 42 1 6.8841 -2.5421 1.9592 43 1 6.1459 -1.0536 2.6097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033435037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:32 Heat of formation + Delta-G solvation = -32.807271 kcal Electronic energy + Delta-G solvation = -27841.105736 eV Core-core repulsion = 23888.766991 eV Total energy + Delta-G solvation = -3952.338745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34499 -40.89636 -39.82322 -38.90754 -37.89084 -36.01976 -34.13453 -32.74554 -31.98927 -30.80505 -29.62100 -28.45902 -27.94115 -26.42579 -25.02375 -24.16076 -22.40271 -22.04735 -20.55404 -20.11392 -19.04319 -18.89538 -18.24349 -17.95024 -17.50660 -16.97017 -16.67726 -16.28305 -16.26694 -15.87524 -15.76531 -15.61135 -15.28082 -14.66781 -14.41022 -14.07042 -13.92612 -13.65407 -13.46910 -13.29746 -12.99752 -12.93665 -12.82604 -12.74764 -12.55252 -12.48423 -12.40603 -12.06632 -11.88526 -11.82622 -11.54019 -11.06881 -10.61586 -10.56674 -10.20534 -10.05744 -9.65031 -8.80313 -7.85026 -5.18342 -0.54495 0.06531 1.48870 1.49896 1.58991 1.64636 1.88611 2.00978 2.39156 2.52083 2.65657 3.35110 3.35251 3.40545 3.65251 3.72230 3.85816 3.95925 4.02664 4.12605 4.19247 4.31291 4.32220 4.35716 4.42030 4.53259 4.58361 4.67001 4.70542 4.71599 4.88476 4.92479 5.05433 5.12427 5.17355 5.48195 5.54628 5.65960 5.81116 6.05687 6.23704 6.36190 6.51820 6.75396 7.07826 7.13173 7.78490 8.45309 9.26365 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.003302 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.206432 B = 8477.306608 C = 9179.885061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.306 6.306 3 C 0.229 3.771 4 C -0.279 4.279 5 C 0.370 3.630 6 O -0.483 6.483 7 N -0.548 5.548 8 C 0.185 3.815 9 C -0.254 4.254 10 C 0.568 3.432 11 O -0.563 6.563 12 N -0.589 5.589 13 C 0.061 3.939 14 C 0.141 3.859 15 H 0.106 0.894 16 C -0.140 4.140 17 C 0.172 3.828 18 N -0.617 5.617 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.939 5.939 23 Si 0.971 3.029 24 H -0.288 1.288 25 H -0.274 1.274 26 H -0.292 1.292 27 C 0.128 3.872 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.182 0.818 32 H 0.429 0.571 33 H 0.201 0.799 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.249 0.751 42 H 0.035 0.965 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.748 5.448 -9.134 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.215 6.215 3 C 0.173 3.827 4 C -0.301 4.301 5 C 0.193 3.807 6 O -0.295 6.295 7 N -0.271 5.271 8 C 0.028 3.972 9 C -0.261 4.261 10 C 0.358 3.642 11 O -0.442 6.442 12 N -0.320 5.320 13 C -0.081 4.081 14 C 0.037 3.963 15 H 0.124 0.876 16 C -0.179 4.179 17 C 0.048 3.952 18 N -0.344 5.344 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.247 4.247 22 N -0.587 5.587 23 Si 0.800 3.200 24 H -0.215 1.215 25 H -0.199 1.199 26 H -0.219 1.219 27 C 0.001 3.999 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.200 0.800 32 H 0.292 0.708 33 H 0.217 0.783 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -20.415 5.528 -8.691 22.867 hybrid contribution 0.332 -0.706 0.563 0.962 sum -20.083 4.822 -8.129 22.196 Atomic orbital electron populations 1.23604 0.75268 1.06304 1.03342 1.86306 1.24367 1.25275 1.85514 1.19262 0.90514 0.85711 0.87184 1.22236 1.03449 0.90203 1.14206 1.19244 0.86458 0.85884 0.89130 1.84658 1.70667 1.37871 1.36281 1.67388 1.07380 1.33106 1.19223 1.23838 1.01673 0.84330 0.87396 1.20376 0.92049 0.95597 1.18065 1.17995 0.80925 0.87804 0.77498 1.90752 1.72399 1.32496 1.48594 1.47658 1.12617 1.12407 1.59367 1.22655 1.00078 0.85526 0.99810 1.21899 0.91143 0.87590 0.95702 0.87598 1.23262 0.94600 1.01984 0.98067 1.21505 0.96479 0.93806 0.83457 1.44707 1.14605 1.60685 1.14409 1.19288 1.04296 1.16854 0.96955 0.91016 1.25499 1.00841 0.97103 1.01272 1.70095 1.27728 1.21004 1.39860 0.85182 0.78255 0.77749 0.78805 1.21479 1.19945 1.21890 1.21687 0.86942 0.96562 0.94671 0.90603 0.90083 0.86377 0.80033 0.70763 0.78291 0.89848 0.89064 0.91385 0.90196 0.89511 0.95182 0.94926 0.94179 0.94733 0.96411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.22 16 2 O -0.31 -7.65 9.01 -69.71 -0.63 -8.28 16 3 C 0.23 5.64 6.71 23.06 0.15 5.80 16 4 C -0.28 -5.03 9.02 22.52 0.20 -4.83 16 5 C 0.37 7.38 7.73 84.69 0.65 8.03 16 6 O -0.48 -7.13 13.54 -88.28 -1.20 -8.33 16 7 N -0.55 -13.30 10.36 -307.95 -3.19 -16.49 16 8 C 0.19 4.59 8.69 85.04 0.74 5.33 16 9 C -0.25 -7.14 5.56 -19.91 -0.11 -7.25 16 10 C 0.57 19.18 7.46 86.64 0.65 19.83 16 11 O -0.56 -22.14 15.05 14.43 0.22 -21.92 16 12 N -0.59 -19.70 2.83 -819.93 -2.32 -22.02 16 13 C 0.06 1.89 6.72 127.77 0.86 2.75 16 14 C 0.14 5.11 3.58 46.18 0.17 5.28 16 15 H 0.11 3.83 7.00 -2.39 -0.02 3.81 16 16 C -0.14 -5.03 6.54 32.06 0.21 -4.82 16 17 C 0.17 7.89 4.56 86.93 0.40 8.29 16 18 N -0.62 -30.78 2.99 -691.57 -2.07 -32.85 16 19 C -0.24 -13.51 10.23 84.03 0.86 -12.65 16 20 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 21 C -0.05 -2.92 5.40 84.86 0.46 -2.46 16 22 N -0.94 -53.73 10.69 21.65 0.23 -53.50 16 23 Si 0.97 45.01 29.56 68.60 2.03 47.04 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 C 0.13 5.42 6.20 86.73 0.54 5.96 16 28 H 0.08 0.71 7.70 -2.39 -0.02 0.70 16 29 H 0.08 0.67 7.72 -2.39 -0.02 0.66 16 30 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.18 1.96 6.45 -2.91 -0.02 1.94 16 32 H 0.43 1.58 9.06 -74.06 -0.67 0.91 16 33 H 0.20 4.50 4.35 -2.91 -0.01 4.49 16 34 H 0.08 2.27 6.89 -2.39 -0.02 2.25 16 35 H 0.09 2.47 4.81 -2.39 -0.01 2.46 16 36 H 0.07 2.66 5.64 -2.39 -0.01 2.65 16 37 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.09 2.73 8.14 -2.39 -0.02 2.72 16 39 H 0.03 1.42 5.37 -2.39 -0.01 1.41 16 40 H 0.03 1.71 6.96 -2.39 -0.02 1.69 16 41 H 0.25 13.90 8.31 -92.71 -0.77 13.12 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.02 0.79 8.05 -2.39 -0.02 0.77 16 Total: -1.00 -74.34 342.31 0.36 -73.97 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.40 Total: 11.90 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 6.89 Total: 30.47 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -7.35 Total: -124.86 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.61 Total: -38.53 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -74.34 0.36 -73.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033435037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.166 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds