Wall clock time and date at job start Tue Mar 31 2020 13:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35509 * 116.99989 * 2 1 4 4 C 1.39219 * 120.89630 * 0.27043 * 3 2 1 5 5 C 1.37911 * 119.38355 * 180.29436 * 4 3 2 6 6 N 1.32075 * 121.28992 * 359.67505 * 5 4 3 7 7 C 1.32180 * 121.98217 * 0.02562 * 6 5 4 8 8 O 1.35426 * 119.77581 * 180.02562 * 7 6 5 9 9 C 1.40288 * 120.44869 * 0.02562 * 7 6 5 10 10 C 1.47230 * 120.65885 * 179.97438 * 9 7 6 11 11 O 1.21614 * 119.99970 * 89.99872 * 10 9 7 12 12 N 1.34780 * 119.99891 * 270.00296 * 10 9 7 13 13 C 1.46500 * 120.00081 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.09002 * 110.88544 * 3.87665 * 14 12 10 16 16 C 1.55163 * 111.00609 * 240.00339 * 14 12 10 17 17 C 1.54321 * 102.94147 * 206.42373 * 16 14 12 18 18 N 1.47022 * 107.27404 * 22.18804 * 17 16 14 19 19 C 1.36928 * 125.65036 * 181.02255 * 18 17 16 20 20 H 1.07999 * 120.00370 * 170.20480 * 19 18 17 21 21 C 1.38814 * 120.00312 * 350.20291 * 19 18 17 22 22 N 1.31618 * 120.00407 * 164.65642 * 21 19 18 23 23 Si 1.86800 * 119.99493 * 344.38533 * 21 19 18 24 24 H 1.48505 * 109.46738 * 185.80524 * 23 21 19 25 25 H 1.48497 * 109.47004 * 305.80337 * 23 21 19 26 26 H 1.48497 * 109.47586 * 65.80402 * 23 21 19 27 27 C 1.47431 * 108.70240 * 1.28940 * 18 17 16 28 28 H 1.08992 * 109.47580 * 300.00318 * 1 2 3 29 29 H 1.09003 * 109.46952 * 60.00199 * 1 2 3 30 30 H 1.08999 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.30752 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.35113 * 179.69757 * 5 4 3 33 33 H 0.96709 * 113.99852 * 270.01994 * 8 7 6 34 34 H 1.09001 * 109.46951 * 270.00207 * 13 12 10 35 35 H 1.08999 * 109.47037 * 30.00120 * 13 12 10 36 36 H 1.09003 * 109.46944 * 149.99792 * 13 12 10 37 37 H 1.09003 * 110.71916 * 88.05473 * 16 14 12 38 38 H 1.09003 * 110.71741 * 324.78412 * 16 14 12 39 39 H 1.09006 * 109.87866 * 262.77170 * 17 16 14 40 40 H 1.09000 * 110.01032 * 141.68152 * 17 16 14 41 41 H 0.97002 * 119.99486 * 354.77851 * 22 21 19 42 42 H 1.08997 * 110.36772 * 94.47992 * 27 18 17 43 43 H 1.08997 * 110.36683 * 216.80263 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3043 2.3867 0.0056 5 6 1.9626 3.5985 -0.0007 6 7 3.2818 3.6626 -0.0056 7 6 4.0354 2.5766 -0.0052 8 8 5.3846 2.6943 -0.0099 9 6 3.4472 1.3031 0.0000 10 6 4.2822 0.0904 -0.0002 11 8 4.6309 -0.4078 1.0530 12 7 4.6602 -0.4674 -1.1674 13 6 4.2397 0.1326 -2.4361 14 6 5.4915 -1.6736 -1.1676 15 1 5.6591 -2.0301 -0.1513 16 6 6.8373 -1.4216 -1.8975 17 6 7.2295 -2.8287 -2.3951 18 7 5.9976 -3.6288 -2.4574 19 6 5.9176 -4.9430 -2.8334 20 1 4.9957 -5.4886 -2.6970 21 6 7.0216 -5.5741 -3.3901 22 7 7.0568 -6.8872 -3.4730 23 14 8.4542 -4.5592 -4.0283 24 1 9.4352 -5.4526 -4.6953 25 1 7.9549 -3.5567 -5.0034 26 1 9.1112 -3.8618 -2.8939 27 6 4.8616 -2.7799 -2.0541 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2249 2.3528 0.0097 32 1 1.3881 4.5130 -0.0013 33 1 5.7735 2.7265 -0.8947 34 1 3.2892 -0.3017 -2.7460 35 1 4.1229 1.2087 -2.3080 36 1 4.9943 -0.0628 -3.1981 37 1 7.5851 -1.0350 -1.2050 38 1 6.6989 -0.7403 -2.7371 39 1 7.9332 -3.2852 -1.6989 40 1 7.6788 -2.7622 -3.3859 41 1 6.3471 -7.4172 -3.0776 42 1 4.3857 -2.3412 -2.9312 43 1 4.1394 -3.3602 -1.4800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033588764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:26 Heat of formation + Delta-G solvation = -17.868174 kcal Electronic energy + Delta-G solvation = -28014.377243 eV Core-core repulsion = 24062.686306 eV Total energy + Delta-G solvation = -3951.690937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47489 -39.65326 -39.14156 -37.61514 -37.11489 -35.01393 -32.61872 -31.97508 -30.93396 -29.53291 -28.35341 -27.91791 -26.93961 -25.03389 -23.65773 -23.21372 -21.38477 -20.56770 -19.64857 -19.18776 -17.97334 -17.68070 -17.58596 -17.42930 -16.59896 -16.27158 -15.65141 -15.29413 -15.12608 -14.86385 -14.78019 -14.47251 -13.69351 -13.56116 -13.40633 -13.16616 -12.99022 -12.71054 -12.56523 -12.27933 -12.18752 -12.17941 -12.03587 -11.92342 -11.44285 -11.08257 -11.00786 -10.58667 -10.38314 -9.99809 -9.74653 -9.44072 -9.35090 -9.27937 -9.02283 -8.77769 -8.48465 -7.05456 -6.31466 -3.22756 0.38260 0.76954 2.48263 2.49969 2.86435 3.11021 3.34616 3.42675 3.48386 3.71683 4.06569 4.32565 4.43937 4.51303 4.62511 4.67136 4.68577 4.88580 4.97725 5.00642 5.04996 5.16788 5.17245 5.22151 5.38489 5.41207 5.45162 5.51242 5.62335 5.78277 5.85068 5.87566 6.16897 6.35435 6.39958 6.53391 6.63884 6.73022 6.74226 7.05867 7.37091 7.46362 7.64583 8.12986 8.32949 9.03630 9.54557 10.20723 11.19287 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.003522 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.851328 B = 7948.504793 C = 8729.028356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.297 6.297 3 C 0.216 3.784 4 C -0.274 4.274 5 C 0.171 3.829 6 N -0.523 5.523 7 C 0.380 3.620 8 O -0.468 6.468 9 C -0.221 4.221 10 C 0.582 3.418 11 O -0.522 6.522 12 N -0.593 5.593 13 C 0.080 3.920 14 C 0.125 3.875 15 H 0.112 0.888 16 C -0.138 4.138 17 C 0.112 3.888 18 N -0.610 5.610 19 C -0.322 4.322 20 H 0.079 0.921 21 C -0.021 4.021 22 N -0.927 5.927 23 Si 1.070 2.930 24 H -0.301 1.301 25 H -0.299 1.299 26 H -0.285 1.285 27 C 0.133 3.867 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.406 0.594 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.027 0.973 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 23.296 3.536 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.206 6.206 3 C 0.161 3.839 4 C -0.295 4.295 5 C 0.015 3.985 6 N -0.245 5.245 7 C 0.201 3.799 8 O -0.275 6.275 9 C -0.229 4.229 10 C 0.368 3.632 11 O -0.397 6.397 12 N -0.325 5.325 13 C -0.064 4.064 14 C 0.021 3.979 15 H 0.130 0.870 16 C -0.177 4.177 17 C -0.013 4.013 18 N -0.338 5.338 19 C -0.449 4.449 20 H 0.096 0.904 21 C -0.220 4.220 22 N -0.569 5.569 23 Si 0.904 3.096 24 H -0.230 1.230 25 H -0.227 1.227 26 H -0.212 1.212 27 C 0.006 3.994 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.167 0.833 32 H 0.186 0.814 33 H 0.265 0.735 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.725 23.318 3.890 26.388 hybrid contribution -2.216 -0.459 0.182 2.270 sum -13.940 22.859 4.072 27.082 Atomic orbital electron populations 1.23264 0.76847 1.05144 1.01815 1.86148 1.22551 1.25506 1.86409 1.19090 0.90217 0.85374 0.89255 1.22182 1.02003 0.92544 1.12787 1.22414 0.88615 0.97318 0.90135 1.67306 1.07283 1.32014 1.17930 1.18757 0.84750 0.85404 0.91006 1.84762 1.13735 1.95089 1.33951 1.20263 0.91827 0.95650 1.15141 1.17503 0.79177 0.82647 0.83883 1.90814 1.55217 1.62709 1.30986 1.47678 1.51349 1.27933 1.05536 1.21728 1.01212 0.97143 0.86277 1.22510 0.89695 0.83741 1.01918 0.87035 1.22942 0.96882 0.98000 0.99878 1.21981 0.91209 0.89905 0.98197 1.44730 1.00419 1.08837 1.79838 1.20170 1.01031 0.83670 1.40034 0.90363 1.25842 1.00149 0.97278 0.98775 1.70893 1.34995 1.03903 1.47074 0.83843 0.76172 0.73278 0.76274 1.22969 1.22743 1.21250 1.21791 0.91450 0.90987 0.95176 0.91943 0.91870 0.87297 0.83290 0.81445 0.73482 0.92203 0.92299 0.90001 0.90750 0.91175 0.93244 0.95156 0.92827 0.95530 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.14 16 2 O -0.30 -3.35 10.03 -18.22 -0.18 -3.54 16 3 C 0.22 2.38 6.74 -38.32 -0.26 2.12 16 4 C -0.27 -2.06 9.10 -39.34 -0.36 -2.42 16 5 C 0.17 1.32 11.15 -17.57 -0.20 1.12 16 6 N -0.52 -5.67 10.37 -13.06 -0.14 -5.80 16 7 C 0.38 4.59 7.34 -16.63 -0.12 4.47 16 8 O -0.47 -5.39 13.02 -17.97 -0.23 -5.62 16 9 C -0.22 -2.90 3.94 -104.57 -0.41 -3.32 16 10 C 0.58 9.43 6.28 -12.61 -0.08 9.36 16 11 O -0.52 -10.68 16.49 5.27 0.09 -10.60 16 12 N -0.59 -8.76 2.91 -172.68 -0.50 -9.27 16 13 C 0.08 0.88 8.86 59.85 0.53 1.41 16 14 C 0.13 2.22 3.47 -65.66 -0.23 1.99 16 15 H 0.11 2.24 7.02 -51.93 -0.36 1.87 16 16 C -0.14 -2.33 6.51 -24.89 -0.16 -2.49 16 17 C 0.11 2.44 4.62 -3.07 -0.01 2.43 16 18 N -0.61 -15.10 3.33 -169.93 -0.57 -15.66 16 19 C -0.32 -9.32 10.55 -15.06 -0.16 -9.48 16 20 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 21 C -0.02 -0.63 5.49 -17.43 -0.10 -0.72 16 22 N -0.93 -29.40 13.70 55.49 0.76 -28.64 16 23 Si 1.07 26.86 24.53 -169.99 -4.17 22.69 16 24 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.30 -7.15 6.84 56.52 0.39 -6.76 16 26 H -0.29 -6.55 5.42 56.52 0.31 -6.25 16 27 C 0.13 2.72 6.79 -2.41 -0.02 2.70 16 28 H 0.06 0.28 7.69 -51.93 -0.40 -0.12 16 29 H 0.06 0.26 7.72 -51.93 -0.40 -0.14 16 30 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.15 0.62 6.45 -52.49 -0.34 0.28 16 32 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.41 2.66 9.06 45.56 0.41 3.08 16 34 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.06 0.51 6.55 -51.93 -0.34 0.17 16 36 H 0.08 0.87 6.41 -51.93 -0.33 0.54 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.02 6.40 -51.93 -0.33 0.68 16 39 H 0.05 1.14 6.74 -51.93 -0.35 0.79 16 40 H 0.03 0.69 3.88 -51.93 -0.20 0.49 16 41 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 42 H 0.03 0.52 7.00 -51.93 -0.36 0.15 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -38.61 346.71 -5.10 -43.71 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.81 Total: -0.79 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.58 Total: 8.30 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.44 Total: -59.37 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.33 Total: -19.76 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.17 Total: 22.69 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.61 -5.10 -43.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033588764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.839 kcal (2) G-P(sol) polarization free energy of solvation -38.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds