Wall clock time and date at job start Tue Mar 31 2020 13:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35509 * 116.99989 * 2 1 4 4 C 1.39219 * 120.89630 * 0.27043 * 3 2 1 5 5 C 1.37911 * 119.38355 * 180.29436 * 4 3 2 6 6 N 1.32075 * 121.28992 * 359.67505 * 5 4 3 7 7 C 1.32180 * 121.98217 * 0.02562 * 6 5 4 8 8 O 1.35426 * 119.77581 * 180.02562 * 7 6 5 9 9 C 1.40288 * 120.44869 * 0.02562 * 7 6 5 10 10 C 1.47230 * 120.65885 * 179.97438 * 9 7 6 11 11 O 1.21614 * 119.99970 * 89.99872 * 10 9 7 12 12 N 1.34780 * 119.99891 * 270.00296 * 10 9 7 13 13 C 1.46500 * 120.00081 * 359.97438 * 12 10 9 14 14 C 1.46497 * 120.00046 * 179.97438 * 12 10 9 15 15 H 1.09002 * 110.88544 * 3.87665 * 14 12 10 16 16 C 1.55163 * 111.00609 * 240.00339 * 14 12 10 17 17 C 1.54321 * 102.94147 * 206.42373 * 16 14 12 18 18 N 1.47022 * 107.27404 * 22.18804 * 17 16 14 19 19 C 1.36928 * 125.65036 * 181.02255 * 18 17 16 20 20 H 1.07999 * 120.00370 * 170.20480 * 19 18 17 21 21 C 1.38814 * 120.00312 * 350.20291 * 19 18 17 22 22 N 1.31618 * 120.00407 * 164.65642 * 21 19 18 23 23 Si 1.86800 * 119.99493 * 344.38533 * 21 19 18 24 24 H 1.48505 * 109.46738 * 185.80524 * 23 21 19 25 25 H 1.48497 * 109.47004 * 305.80337 * 23 21 19 26 26 H 1.48497 * 109.47586 * 65.80402 * 23 21 19 27 27 C 1.47431 * 108.70240 * 1.28940 * 18 17 16 28 28 H 1.08992 * 109.47580 * 300.00318 * 1 2 3 29 29 H 1.09003 * 109.46952 * 60.00199 * 1 2 3 30 30 H 1.08999 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.30752 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.35113 * 179.69757 * 5 4 3 33 33 H 0.96709 * 113.99852 * 270.01994 * 8 7 6 34 34 H 1.09001 * 109.46951 * 270.00207 * 13 12 10 35 35 H 1.08999 * 109.47037 * 30.00120 * 13 12 10 36 36 H 1.09003 * 109.46944 * 149.99792 * 13 12 10 37 37 H 1.09003 * 110.71916 * 88.05473 * 16 14 12 38 38 H 1.09003 * 110.71741 * 324.78412 * 16 14 12 39 39 H 1.09006 * 109.87866 * 262.77170 * 17 16 14 40 40 H 1.09000 * 110.01032 * 141.68152 * 17 16 14 41 41 H 0.97002 * 119.99486 * 354.77851 * 22 21 19 42 42 H 1.08997 * 110.36772 * 94.47992 * 27 18 17 43 43 H 1.08997 * 110.36683 * 216.80263 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3043 2.3867 0.0056 5 6 1.9626 3.5985 -0.0007 6 7 3.2818 3.6626 -0.0056 7 6 4.0354 2.5766 -0.0052 8 8 5.3846 2.6943 -0.0099 9 6 3.4472 1.3031 0.0000 10 6 4.2822 0.0904 -0.0002 11 8 4.6309 -0.4078 1.0530 12 7 4.6602 -0.4674 -1.1674 13 6 4.2397 0.1326 -2.4361 14 6 5.4915 -1.6736 -1.1676 15 1 5.6591 -2.0301 -0.1513 16 6 6.8373 -1.4216 -1.8975 17 6 7.2295 -2.8287 -2.3951 18 7 5.9976 -3.6288 -2.4574 19 6 5.9176 -4.9430 -2.8334 20 1 4.9957 -5.4886 -2.6970 21 6 7.0216 -5.5741 -3.3901 22 7 7.0568 -6.8872 -3.4730 23 14 8.4542 -4.5592 -4.0283 24 1 9.4352 -5.4526 -4.6953 25 1 7.9549 -3.5567 -5.0034 26 1 9.1112 -3.8618 -2.8939 27 6 4.8616 -2.7799 -2.0541 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2249 2.3528 0.0097 32 1 1.3881 4.5130 -0.0013 33 1 5.7735 2.7265 -0.8947 34 1 3.2892 -0.3017 -2.7460 35 1 4.1229 1.2087 -2.3080 36 1 4.9943 -0.0628 -3.1981 37 1 7.5851 -1.0350 -1.2050 38 1 6.6989 -0.7403 -2.7371 39 1 7.9332 -3.2852 -1.6989 40 1 7.6788 -2.7622 -3.3859 41 1 6.3471 -7.4172 -3.0776 42 1 4.3857 -2.3412 -2.9312 43 1 4.1394 -3.3602 -1.4800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033588764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:26 Heat of formation + Delta-G solvation = -52.030178 kcal Electronic energy + Delta-G solvation = -28015.858618 eV Core-core repulsion = 24062.686306 eV Total energy + Delta-G solvation = -3953.172313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.30400 -40.83375 -39.90082 -39.16431 -37.86393 -36.46091 -34.48876 -33.03108 -31.73372 -31.20734 -29.86924 -28.48311 -28.01169 -26.30995 -25.19236 -23.92805 -22.82513 -22.26074 -20.64500 -20.23461 -19.61324 -18.77051 -18.63318 -18.38683 -17.85289 -16.99266 -16.98787 -16.38729 -16.19466 -16.00811 -15.72145 -15.49990 -15.48668 -14.95417 -14.45105 -14.31627 -14.13701 -14.08366 -13.93259 -13.62586 -13.28922 -13.14857 -13.07190 -12.93911 -12.57318 -12.51276 -12.49493 -12.29520 -11.71503 -11.46063 -11.41323 -11.05833 -10.77390 -10.62500 -10.14025 -10.05968 -9.81841 -9.13869 -8.68900 -5.51710 -0.32774 0.05380 1.31600 1.41587 1.50803 1.69395 1.77703 1.86406 2.41695 2.55635 2.64579 3.08800 3.21948 3.32314 3.62857 3.64987 3.73879 3.78576 3.89605 4.00226 4.09728 4.24081 4.25743 4.29078 4.33538 4.38429 4.47032 4.50243 4.63776 4.69715 4.71087 4.80362 4.83594 4.88106 5.01178 5.11203 5.24022 5.35645 5.51401 6.02939 6.05294 6.19494 6.44771 6.77379 6.78242 6.93497 7.38077 8.02935 8.83874 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.003522 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.851328 B = 7948.504793 C = 8729.028356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.331 6.331 3 C 0.206 3.794 4 C -0.258 4.258 5 C 0.178 3.822 6 N -0.539 5.539 7 C 0.378 3.622 8 O -0.485 6.485 9 C -0.249 4.249 10 C 0.584 3.416 11 O -0.579 6.579 12 N -0.587 5.587 13 C 0.075 3.925 14 C 0.137 3.863 15 H 0.081 0.919 16 C -0.121 4.121 17 C 0.102 3.898 18 N -0.631 5.631 19 C -0.315 4.315 20 H 0.043 0.957 21 C -0.078 4.078 22 N -0.962 5.962 23 Si 1.110 2.890 24 H -0.312 1.312 25 H -0.274 1.274 26 H -0.252 1.252 27 C 0.135 3.865 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.188 0.812 32 H 0.211 0.789 33 H 0.423 0.577 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.034 0.966 40 H 0.038 0.962 41 H 0.247 0.753 42 H 0.049 0.951 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 27.762 2.614 31.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.151 3.849 4 C -0.278 4.278 5 C 0.023 3.977 6 N -0.262 5.262 7 C 0.198 3.802 8 O -0.296 6.296 9 C -0.257 4.257 10 C 0.372 3.628 11 O -0.458 6.458 12 N -0.317 5.317 13 C -0.067 4.067 14 C 0.032 3.968 15 H 0.099 0.901 16 C -0.159 4.159 17 C -0.022 4.022 18 N -0.359 5.359 19 C -0.444 4.444 20 H 0.061 0.939 21 C -0.271 4.271 22 N -0.606 5.606 23 Si 0.936 3.064 24 H -0.242 1.242 25 H -0.201 1.201 26 H -0.177 1.177 27 C 0.008 3.992 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.205 0.795 32 H 0.228 0.772 33 H 0.286 0.714 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.818 27.849 2.947 30.798 hybrid contribution -2.121 -1.848 0.524 2.862 sum -14.939 26.000 3.471 30.187 Atomic orbital electron populations 1.23582 0.74464 1.06092 1.03867 1.86107 1.25194 1.26368 1.86470 1.19322 0.89748 0.86458 0.89389 1.22552 1.03656 0.90929 1.10650 1.23200 0.87786 0.99019 0.87666 1.67418 1.08754 1.31262 1.18769 1.18786 0.84914 0.85321 0.91185 1.84712 1.14020 1.95095 1.35778 1.20116 0.92569 0.94372 1.18668 1.18030 0.78514 0.83164 0.83130 1.90774 1.57448 1.64642 1.32985 1.47663 1.50512 1.26644 1.06888 1.21983 1.01524 0.98709 0.84442 1.22043 0.90737 0.84316 0.99723 0.90054 1.22896 0.96219 0.95610 1.01189 1.22145 0.89811 0.92028 0.98251 1.44759 1.03125 1.08193 1.79831 1.20049 0.99621 0.85775 1.38925 0.93868 1.27241 1.03234 0.97417 0.99203 1.71006 1.35169 1.05177 1.49261 0.83415 0.73228 0.72558 0.77149 1.24154 1.20098 1.17693 1.21864 0.90177 0.91110 0.96004 0.90183 0.89367 0.87156 0.79497 0.77228 0.71447 0.91964 0.89522 0.88856 0.88732 0.87662 0.94770 0.94483 0.94442 0.93346 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.84 113.37 1.12 1.24 16 2 O -0.33 -7.08 10.03 -88.11 -0.88 -7.96 16 3 C 0.21 4.11 6.74 23.09 0.16 4.26 16 4 C -0.26 -2.82 9.10 22.43 0.20 -2.62 16 5 C 0.18 1.96 11.15 84.58 0.94 2.91 16 6 N -0.54 -10.06 10.37 -308.28 -3.20 -13.25 16 7 C 0.38 8.41 7.34 85.14 0.63 9.03 16 8 O -0.49 -10.49 13.02 -87.22 -1.14 -11.62 16 9 C -0.25 -6.23 3.94 -19.83 -0.08 -6.31 16 10 C 0.58 18.85 6.28 86.61 0.54 19.39 16 11 O -0.58 -24.57 16.49 -4.08 -0.07 -24.64 16 12 N -0.59 -16.66 2.91 -818.49 -2.38 -19.04 16 13 C 0.07 1.44 8.86 127.77 1.13 2.57 16 14 C 0.14 4.79 3.47 46.46 0.16 4.95 16 15 H 0.08 3.37 7.02 -2.39 -0.02 3.36 16 16 C -0.12 -3.73 6.51 31.78 0.21 -3.53 16 17 C 0.10 4.26 4.62 86.73 0.40 4.66 16 18 N -0.63 -31.31 3.33 -691.55 -2.30 -33.61 16 19 C -0.32 -18.85 10.55 84.04 0.89 -17.96 16 20 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 21 C -0.08 -4.77 5.49 84.86 0.47 -4.30 16 22 N -0.96 -63.28 13.70 21.65 0.30 -62.99 16 23 Si 1.11 53.61 24.53 68.60 1.68 55.29 16 24 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 25 H -0.27 -12.06 6.84 99.48 0.68 -11.38 16 26 H -0.25 -10.77 5.42 99.48 0.54 -10.23 16 27 C 0.13 5.52 6.79 86.93 0.59 6.11 16 28 H 0.08 0.48 7.69 -2.39 -0.02 0.46 16 29 H 0.09 0.40 7.72 -2.39 -0.02 0.38 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.19 0.52 6.45 -2.91 -0.02 0.50 16 32 H 0.21 0.42 8.06 -2.91 -0.02 0.40 16 33 H 0.42 4.70 9.06 -74.05 -0.67 4.03 16 34 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 35 H 0.09 1.22 6.55 -2.39 -0.02 1.21 16 36 H 0.09 1.60 6.41 -2.39 -0.02 1.58 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.11 2.55 6.40 -2.39 -0.02 2.53 16 39 H 0.03 1.53 6.74 -2.38 -0.02 1.52 16 40 H 0.04 1.55 3.88 -2.39 -0.01 1.54 16 41 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 42 H 0.05 1.80 7.00 -2.39 -0.02 1.78 16 43 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -89.98 346.71 -0.47 -90.45 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.16 Total: 6.96 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.35 Total: 20.40 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -7.58 Total: -128.89 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -2.09 Total: -44.22 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 1.68 Total: 55.29 kcal Total: -89.98 -0.47 -90.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033588764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.417 kcal (2) G-P(sol) polarization free energy of solvation -89.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds