Wall clock time and date at job start Tue Mar 31 2020 12:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47220 * 2 1 4 4 C 1.34780 * 120.00241 * 83.77286 * 3 2 1 5 5 O 1.21608 * 120.00654 * 183.77487 * 4 3 2 6 6 C 1.47295 * 119.99618 * 3.77256 * 4 3 2 7 7 C 1.36569 * 125.80666 * 173.86598 * 6 4 3 8 8 C 1.40060 * 106.92790 * 179.97438 * 7 6 4 9 9 C 1.36571 * 106.92864 * 359.97438 * 8 7 6 10 10 C 1.47287 * 125.80949 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00206 * 179.97438 * 10 9 8 12 12 O 1.21606 * 119.99837 * 359.97438 * 10 9 8 13 13 O 1.34551 * 125.80742 * 353.86184 * 6 4 3 14 14 C 1.46499 * 120.00291 * 263.77063 * 3 2 1 15 15 H 1.09005 * 110.64145 * 1.69242 * 14 3 2 16 16 C 1.55161 * 110.71966 * 125.02204 * 14 3 2 17 17 C 1.54913 * 101.57870 * 153.86937 * 16 14 3 18 18 N 1.47424 * 104.83313 * 322.99006 * 17 16 14 19 19 C 1.36937 * 125.64919 * 204.16523 * 18 17 16 20 20 H 1.07998 * 120.00266 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00031 * 359.96253 * 19 18 17 22 22 N 1.31624 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00286 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47096 * 89.99632 * 23 21 19 25 25 H 1.48498 * 109.47303 * 209.99904 * 23 21 19 26 26 H 1.48504 * 109.46860 * 329.99546 * 23 21 19 27 27 C 1.47026 * 108.70154 * 24.12984 * 18 17 16 28 28 H 1.09002 * 109.47002 * 59.99684 * 1 2 3 29 29 H 1.08993 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46845 * 300.00031 * 1 2 3 31 31 H 1.09001 * 109.46845 * 239.99968 * 2 1 3 32 32 H 1.09002 * 109.47002 * 120.00316 * 2 1 3 33 33 H 1.08000 * 126.53337 * 359.97438 * 7 6 4 34 34 H 1.07997 * 126.53706 * 180.26216 * 8 7 6 35 35 H 0.97006 * 119.99685 * 359.97438 * 11 10 9 36 36 H 0.97003 * 120.00262 * 179.97438 * 11 10 9 37 37 H 1.09003 * 111.00463 * 271.94366 * 16 14 3 38 38 H 1.08996 * 111.00098 * 35.79672 * 16 14 3 39 39 H 1.09006 * 110.36354 * 204.15217 * 17 16 14 40 40 H 1.08997 * 110.46257 * 81.87891 * 17 16 14 41 41 H 0.96999 * 120.00006 * 180.02562 * 22 21 19 42 42 H 1.09003 * 109.88086 * 239.52310 * 27 18 17 43 43 H 1.09004 * 109.87630 * 118.35878 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1237 2.0588 1.1603 5 8 2.4633 3.2265 1.1540 6 6 1.8273 1.3849 2.4361 7 6 2.0071 1.9165 3.6812 8 6 1.6006 0.9434 4.6027 9 6 1.1893 -0.1407 3.8810 10 6 0.6764 -1.4035 4.4392 11 7 0.3012 -2.4015 3.6149 12 8 0.5915 -1.5456 5.6440 13 8 1.3333 0.1409 2.5731 14 6 2.3924 2.0259 -1.2612 15 1 2.2200 1.3541 -2.1021 16 6 1.6164 3.3565 -1.4487 17 6 2.5801 4.1520 -2.3644 18 7 3.9302 3.7941 -1.8929 19 6 5.0585 4.5537 -2.0516 20 1 6.0048 4.2019 -1.6680 21 6 4.9859 5.7758 -2.7058 22 7 3.8326 6.2047 -3.1731 23 14 6.5251 6.8118 -2.9230 24 1 7.1900 6.4487 -4.2002 25 1 6.1544 8.2496 -2.9492 26 1 7.4543 6.5608 -1.7922 27 6 3.8646 2.4868 -1.2233 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3898 2.8999 3.9112 34 1 1.6063 1.0347 5.6788 35 1 0.3686 -2.2879 2.6539 36 1 -0.0363 -3.2333 3.9825 37 1 0.6602 3.1848 -1.9431 38 1 1.4756 3.8643 -0.4947 39 1 2.4110 5.2231 -2.2534 40 1 2.4501 3.8539 -3.4047 41 1 3.7820 7.0586 -3.6306 42 1 4.1965 2.5827 -0.1895 43 1 4.4918 1.7682 -1.7510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033896623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:16 Heat of formation + Delta-G solvation = -8.967337 kcal Electronic energy + Delta-G solvation = -27857.610591 eV Core-core repulsion = 23906.305623 eV Total energy + Delta-G solvation = -3951.304968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -43.10378 -40.06977 -39.49962 -36.89620 -35.70643 -34.31746 -33.26835 -32.43967 -30.50180 -30.38374 -28.97504 -27.21314 -25.18486 -24.23842 -23.46382 -22.34134 -21.15978 -20.83499 -20.14664 -19.50332 -18.53459 -17.43532 -17.26089 -16.96366 -16.74709 -15.74918 -15.38418 -15.00673 -14.72305 -14.56082 -14.35805 -14.20351 -13.87770 -13.45242 -13.37986 -13.24710 -13.07945 -12.98212 -12.18248 -12.11297 -11.84439 -11.51481 -11.23385 -11.03508 -10.97976 -10.87641 -10.78321 -10.60265 -10.34482 -10.26851 -10.06270 -9.84149 -9.59093 -9.38141 -9.03129 -8.58444 -8.45862 -6.74738 -5.57602 -2.98430 0.41468 1.71717 2.09532 2.76316 2.86492 3.11679 3.15575 3.44993 3.49877 3.52315 4.18597 4.54840 4.56923 4.61086 4.79289 5.03181 5.18844 5.23232 5.26303 5.39640 5.48294 5.52247 5.58869 5.59667 5.66381 5.75359 5.84334 5.96619 6.05610 6.13467 6.21413 6.36183 6.50661 6.55527 6.61589 6.73247 6.81838 7.09623 7.38607 7.59366 7.63977 7.70057 7.93033 8.13784 8.44387 9.29355 9.90317 10.54680 11.46390 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.003092 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.945547 B = 9052.438628 C = 9671.426802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 N -0.593 5.593 4 C 0.587 3.413 5 O -0.476 6.476 6 C -0.022 4.022 7 C -0.143 4.143 8 C -0.121 4.121 9 C -0.074 4.074 10 C 0.612 3.388 11 N -0.842 5.842 12 O -0.520 6.520 13 O -0.147 6.147 14 C 0.134 3.866 15 H 0.094 0.906 16 C -0.158 4.158 17 C 0.158 3.842 18 N -0.596 5.596 19 C -0.216 4.216 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.133 3.867 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.408 0.592 36 H 0.410 0.590 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.011 0.989 41 H 0.251 0.749 42 H 0.033 0.967 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 -18.283 10.143 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.325 5.325 4 C 0.373 3.627 5 O -0.350 6.350 6 C -0.076 4.076 7 C -0.163 4.163 8 C -0.142 4.142 9 C -0.127 4.127 10 C 0.397 3.603 11 N -0.406 5.406 12 O -0.397 6.397 13 O -0.043 6.043 14 C 0.032 3.968 15 H 0.112 0.888 16 C -0.197 4.197 17 C 0.032 3.968 18 N -0.322 5.322 19 C -0.344 4.344 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.006 3.994 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.187 0.813 34 H 0.184 0.816 35 H 0.237 0.763 36 H 0.242 0.758 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -9.667 -17.580 10.567 22.675 hybrid contribution 0.662 0.136 -0.392 0.781 sum -9.005 -17.444 10.175 22.111 Atomic orbital electron populations 1.22210 0.95582 1.02030 1.02778 1.21806 0.94783 0.82454 1.03380 1.47941 1.64069 1.13893 1.06608 1.16821 0.79144 0.85844 0.80928 1.91000 1.45189 1.13985 1.84812 1.22877 1.04113 0.83510 0.97071 1.22018 1.02444 1.01773 0.90095 1.21976 0.99193 0.91426 1.01572 1.22271 1.10439 0.98065 0.81962 1.16620 0.76769 0.81188 0.85764 1.43686 1.67877 1.18048 1.10972 1.90920 1.54861 1.80310 1.13627 1.84310 1.64194 1.30276 1.25541 1.22340 0.96970 0.94876 0.82646 0.88818 1.23497 0.97950 0.95475 1.02815 1.21859 0.81544 1.01303 0.92058 1.44299 1.05592 1.16653 1.65655 1.19049 0.86572 0.98620 1.30204 0.90644 1.24763 0.97235 0.97871 1.00873 1.69792 1.22483 1.21278 1.43659 0.86070 0.81979 0.79698 0.77751 1.21748 1.21688 1.20743 1.21483 0.92093 0.89014 0.96828 0.91937 0.91614 0.92500 0.89676 0.89786 0.81267 0.81596 0.76325 0.75800 0.92745 0.89621 0.87452 0.97150 0.93828 0.94923 0.96269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.75 37.16 0.36 -1.01 16 2 C 0.10 0.94 5.71 -4.04 -0.02 0.92 16 3 N -0.59 -8.45 2.55 -165.33 -0.42 -8.88 16 4 C 0.59 9.45 6.70 -12.58 -0.08 9.36 16 5 O -0.48 -9.75 13.24 5.27 0.07 -9.68 16 6 C -0.02 -0.28 6.59 -36.50 -0.24 -0.52 16 7 C -0.14 -1.73 10.60 -39.50 -0.42 -2.15 16 8 C -0.12 -1.29 10.60 -39.50 -0.42 -1.71 16 9 C -0.07 -0.76 7.14 -36.51 -0.26 -1.02 16 10 C 0.61 5.81 8.08 -12.58 -0.10 5.71 16 11 N -0.84 -4.42 8.87 30.40 0.27 -4.15 16 12 O -0.52 -6.63 17.70 5.27 0.09 -6.54 16 13 O -0.15 -1.50 5.87 4.34 0.03 -1.47 16 14 C 0.13 2.31 3.44 -66.10 -0.23 2.09 16 15 H 0.09 1.41 7.80 -51.93 -0.41 1.00 16 16 C -0.16 -3.14 6.39 -24.58 -0.16 -3.29 16 17 C 0.16 3.93 5.89 -2.53 -0.01 3.91 16 18 N -0.60 -15.79 3.39 -170.07 -0.58 -16.37 16 19 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -27.53 10.09 55.49 0.56 -26.97 16 23 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.13 2.88 6.51 -3.07 -0.02 2.86 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.53 7.11 -51.93 -0.37 0.16 16 31 H 0.08 0.69 7.84 -51.93 -0.41 0.29 16 32 H 0.08 0.73 5.38 -51.93 -0.28 0.45 16 33 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 34 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.41 1.36 8.59 -40.82 -0.35 1.01 16 36 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.87 5.68 -51.93 -0.29 1.57 16 39 H 0.11 3.06 5.87 -51.93 -0.30 2.75 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.03 0.76 6.39 -51.93 -0.33 0.43 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -35.25 352.29 -7.16 -42.42 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.61 Total: 0.37 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -1.85 Total: 8.31 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.17 Total: -56.36 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.19 Total: -17.69 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.25 -7.16 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033896623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.450 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds