Wall clock time and date at job start Tue Mar 31 2020 12:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47220 * 2 1 4 4 C 1.34780 * 120.00241 * 83.77286 * 3 2 1 5 5 O 1.21608 * 120.00654 * 183.77487 * 4 3 2 6 6 C 1.47295 * 119.99618 * 3.77256 * 4 3 2 7 7 C 1.36569 * 125.80666 * 173.86598 * 6 4 3 8 8 C 1.40060 * 106.92790 * 179.97438 * 7 6 4 9 9 C 1.36571 * 106.92864 * 359.97438 * 8 7 6 10 10 C 1.47287 * 125.80949 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00206 * 179.97438 * 10 9 8 12 12 O 1.21606 * 119.99837 * 359.97438 * 10 9 8 13 13 O 1.34551 * 125.80742 * 353.86184 * 6 4 3 14 14 C 1.46499 * 120.00291 * 263.77063 * 3 2 1 15 15 H 1.09005 * 110.64145 * 1.69242 * 14 3 2 16 16 C 1.55161 * 110.71966 * 125.02204 * 14 3 2 17 17 C 1.54913 * 101.57870 * 153.86937 * 16 14 3 18 18 N 1.47424 * 104.83313 * 322.99006 * 17 16 14 19 19 C 1.36937 * 125.64919 * 204.16523 * 18 17 16 20 20 H 1.07998 * 120.00266 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00031 * 359.96253 * 19 18 17 22 22 N 1.31624 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00286 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47096 * 89.99632 * 23 21 19 25 25 H 1.48498 * 109.47303 * 209.99904 * 23 21 19 26 26 H 1.48504 * 109.46860 * 329.99546 * 23 21 19 27 27 C 1.47026 * 108.70154 * 24.12984 * 18 17 16 28 28 H 1.09002 * 109.47002 * 59.99684 * 1 2 3 29 29 H 1.08993 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46845 * 300.00031 * 1 2 3 31 31 H 1.09001 * 109.46845 * 239.99968 * 2 1 3 32 32 H 1.09002 * 109.47002 * 120.00316 * 2 1 3 33 33 H 1.08000 * 126.53337 * 359.97438 * 7 6 4 34 34 H 1.07997 * 126.53706 * 180.26216 * 8 7 6 35 35 H 0.97006 * 119.99685 * 359.97438 * 11 10 9 36 36 H 0.97003 * 120.00262 * 179.97438 * 11 10 9 37 37 H 1.09003 * 111.00463 * 271.94366 * 16 14 3 38 38 H 1.08996 * 111.00098 * 35.79672 * 16 14 3 39 39 H 1.09006 * 110.36354 * 204.15217 * 17 16 14 40 40 H 1.08997 * 110.46257 * 81.87891 * 17 16 14 41 41 H 0.96999 * 120.00006 * 180.02562 * 22 21 19 42 42 H 1.09003 * 109.88086 * 239.52310 * 27 18 17 43 43 H 1.09004 * 109.87630 * 118.35878 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1237 2.0588 1.1603 5 8 2.4633 3.2265 1.1540 6 6 1.8273 1.3849 2.4361 7 6 2.0071 1.9165 3.6812 8 6 1.6006 0.9434 4.6027 9 6 1.1893 -0.1407 3.8810 10 6 0.6764 -1.4035 4.4392 11 7 0.3012 -2.4015 3.6149 12 8 0.5915 -1.5456 5.6440 13 8 1.3333 0.1409 2.5731 14 6 2.3924 2.0259 -1.2612 15 1 2.2200 1.3541 -2.1021 16 6 1.6164 3.3565 -1.4487 17 6 2.5801 4.1520 -2.3644 18 7 3.9302 3.7941 -1.8929 19 6 5.0585 4.5537 -2.0516 20 1 6.0048 4.2019 -1.6680 21 6 4.9859 5.7758 -2.7058 22 7 3.8326 6.2047 -3.1731 23 14 6.5251 6.8118 -2.9230 24 1 7.1900 6.4487 -4.2002 25 1 6.1544 8.2496 -2.9492 26 1 7.4543 6.5608 -1.7922 27 6 3.8646 2.4868 -1.2233 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3898 2.8999 3.9112 34 1 1.6063 1.0347 5.6788 35 1 0.3686 -2.2879 2.6539 36 1 -0.0363 -3.2333 3.9825 37 1 0.6602 3.1848 -1.9431 38 1 1.4756 3.8643 -0.4947 39 1 2.4110 5.2231 -2.2534 40 1 2.4501 3.8539 -3.4047 41 1 3.7820 7.0586 -3.6306 42 1 4.1965 2.5827 -0.1895 43 1 4.4918 1.7682 -1.7510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033896623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:10 Heat of formation + Delta-G solvation = -35.468148 kcal Electronic energy + Delta-G solvation = -27858.759752 eV Core-core repulsion = 23906.305623 eV Total energy + Delta-G solvation = -3952.454129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -44.00293 -41.31935 -40.31648 -38.52621 -36.97794 -35.00447 -34.38679 -34.09598 -31.76714 -31.40350 -30.65627 -28.79670 -26.75305 -25.65805 -24.30418 -23.35578 -22.30600 -22.08110 -21.74358 -20.67080 -19.31999 -18.97232 -18.42517 -17.95726 -17.70036 -17.16079 -16.75297 -16.44567 -16.01497 -15.69383 -15.49179 -15.37716 -15.05199 -14.88815 -14.42302 -14.32243 -14.19114 -13.91160 -13.89010 -13.44542 -13.29887 -13.04454 -12.85615 -12.72407 -12.40901 -12.20077 -12.04985 -12.02503 -11.81641 -11.77130 -11.41846 -11.21491 -10.89221 -10.88046 -10.71994 -10.01444 -9.67541 -8.85789 -7.75852 -5.19580 -0.50854 0.77946 1.12393 1.44776 1.47848 1.56273 1.81555 1.97854 2.00722 2.39554 2.50970 3.27340 3.34403 3.69016 3.74423 3.83602 3.88295 3.99577 4.09722 4.25575 4.34605 4.37864 4.39559 4.55630 4.68496 4.70553 4.73776 4.85710 4.96842 5.02349 5.02941 5.08237 5.12070 5.38395 5.42652 5.45382 5.61183 5.72385 5.73951 5.81521 6.21792 6.28914 6.32752 6.94774 7.06577 7.11972 7.79557 8.42870 9.25841 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.003092 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.945547 B = 9052.438628 C = 9671.426802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.587 5.587 4 C 0.585 3.415 5 O -0.534 6.534 6 C -0.038 4.038 7 C -0.142 4.142 8 C -0.129 4.129 9 C -0.060 4.060 10 C 0.614 3.386 11 N -0.815 5.815 12 O -0.555 6.555 13 O -0.128 6.128 14 C 0.153 3.847 15 H 0.130 0.870 16 C -0.144 4.144 17 C 0.161 3.839 18 N -0.619 5.619 19 C -0.237 4.237 20 H 0.075 0.925 21 C -0.068 4.068 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.274 1.274 27 C 0.130 3.870 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.180 0.820 35 H 0.421 0.579 36 H 0.423 0.577 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.066 0.934 40 H -0.001 1.001 41 H 0.247 0.753 42 H 0.013 0.987 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 -21.432 10.352 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.318 5.318 4 C 0.373 3.627 5 O -0.412 6.412 6 C -0.093 4.093 7 C -0.162 4.162 8 C -0.149 4.149 9 C -0.114 4.114 10 C 0.398 3.602 11 N -0.380 5.380 12 O -0.434 6.434 13 O -0.024 6.024 14 C 0.049 3.951 15 H 0.148 0.852 16 C -0.183 4.183 17 C 0.035 3.965 18 N -0.345 5.345 19 C -0.366 4.366 20 H 0.093 0.907 21 C -0.260 4.260 22 N -0.598 5.598 23 Si 0.809 3.191 24 H -0.208 1.208 25 H -0.219 1.219 26 H -0.199 1.199 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.184 0.816 34 H 0.198 0.802 35 H 0.252 0.748 36 H 0.257 0.743 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.016 0.984 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.448 -20.832 10.747 25.664 hybrid contribution 0.861 1.005 -0.405 1.384 sum -9.587 -19.827 10.343 24.331 Atomic orbital electron populations 1.22192 0.94152 1.04088 1.01722 1.22205 0.95882 0.79655 1.05211 1.47985 1.63323 1.15498 1.04968 1.17142 0.78128 0.85351 0.82124 1.90974 1.47889 1.16511 1.85855 1.22234 1.06455 0.84736 0.95826 1.22140 1.01747 1.01978 0.90376 1.22146 0.99399 0.91179 1.02215 1.22554 1.08853 0.98322 0.81711 1.16514 0.76861 0.81388 0.85486 1.43514 1.65717 1.17364 1.11361 1.90919 1.56610 1.80797 1.15119 1.84282 1.63750 1.28882 1.25521 1.22080 0.93210 0.94561 0.85212 0.85230 1.23247 0.98312 0.96050 1.00664 1.21608 0.82549 0.99737 0.92565 1.44588 1.05503 1.18411 1.65986 1.19397 0.87582 0.99453 1.30140 0.90725 1.25629 1.00325 0.99054 1.01022 1.70062 1.24276 1.21293 1.44194 0.85041 0.78541 0.77529 0.77988 1.20833 1.21918 1.19883 1.21632 0.95570 0.87320 0.95152 0.92718 0.87953 0.93885 0.87240 0.88538 0.81645 0.80225 0.74763 0.74299 0.89639 0.91837 0.91644 0.98350 0.94361 0.96850 0.95169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.75 71.98 0.70 -1.33 16 2 C 0.09 1.40 5.71 86.38 0.49 1.89 16 3 N -0.59 -15.74 2.55 -795.25 -2.03 -17.77 16 4 C 0.59 18.78 6.70 86.62 0.58 19.36 16 5 O -0.53 -22.84 13.24 -4.06 -0.05 -22.89 16 6 C -0.04 -0.96 6.59 24.26 0.16 -0.80 16 7 C -0.14 -3.40 10.60 22.32 0.24 -3.16 16 8 C -0.13 -2.58 10.60 22.32 0.24 -2.34 16 9 C -0.06 -1.10 7.14 24.26 0.17 -0.92 16 10 C 0.61 9.93 8.08 86.62 0.70 10.63 16 11 N -0.82 -5.45 8.87 -176.00 -1.56 -7.01 16 12 O -0.55 -13.01 17.70 -4.05 -0.07 -13.08 16 13 O -0.13 -2.30 5.87 -7.37 -0.04 -2.35 16 14 C 0.15 5.06 3.44 46.18 0.16 5.22 16 15 H 0.13 3.42 7.80 -2.38 -0.02 3.40 16 16 C -0.14 -5.70 6.39 31.99 0.20 -5.50 16 17 C 0.16 8.29 5.89 86.86 0.51 8.80 16 18 N -0.62 -33.74 3.39 -691.98 -2.35 -36.09 16 19 C -0.24 -14.05 10.27 84.03 0.86 -13.19 16 20 H 0.07 4.30 7.83 -2.91 -0.02 4.27 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 22 N -0.95 -58.66 10.09 21.65 0.22 -58.44 16 23 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 27 C 0.13 5.64 6.51 86.73 0.56 6.21 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.04 0.67 7.11 -2.39 -0.02 0.65 16 31 H 0.11 1.23 7.84 -2.39 -0.02 1.21 16 32 H 0.10 1.28 5.38 -2.39 -0.01 1.27 16 33 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 34 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.42 0.87 8.59 -92.70 -0.80 0.07 16 36 H 0.42 1.32 8.93 -92.71 -0.83 0.49 16 37 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.06 2.86 5.68 -2.39 -0.01 2.84 16 39 H 0.07 3.93 5.87 -2.38 -0.01 3.92 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.01 0.64 6.39 -2.39 -0.02 0.63 16 43 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -81.43 352.29 1.64 -79.80 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -0.55 Total: 6.89 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 6.05 Total: 21.29 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -5.72 Total: -119.31 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.17 Total: -38.32 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -81.43 1.64 -79.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033896623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.331 kcal (2) G-P(sol) polarization free energy of solvation -81.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds