Wall clock time and date at job start Tue Mar 31 2020 12:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47026 * 2 1 4 4 C 1.34784 * 119.99724 * 83.44597 * 3 2 1 5 5 O 1.21606 * 119.99642 * 185.19716 * 4 3 2 6 6 C 1.47293 * 119.99977 * 5.20129 * 4 3 2 7 7 C 1.36566 * 125.80541 * 174.00663 * 6 4 3 8 8 C 1.40059 * 106.92820 * 180.02562 * 7 6 4 9 9 C 1.36571 * 106.92365 * 359.97438 * 8 7 6 10 10 C 1.47293 * 125.80103 * 179.97438 * 9 8 7 11 11 N 1.34783 * 119.99597 * 180.02562 * 10 9 8 12 12 O 1.21613 * 120.00245 * 0.02562 * 10 9 8 13 13 O 1.34545 * 108.38870 * 0.23388 * 9 8 7 14 14 C 1.46492 * 120.00240 * 263.44613 * 3 2 1 15 15 H 1.09000 * 110.88828 * 10.03350 * 14 3 2 16 16 C 1.55154 * 111.00842 * 246.14855 * 14 3 2 17 17 C 1.54323 * 102.94350 * 277.42747 * 16 14 3 18 18 N 1.47028 * 107.27117 * 337.80597 * 17 16 14 19 19 C 1.36930 * 125.64796 * 178.98569 * 18 17 16 20 20 H 1.08006 * 119.99944 * 185.18433 * 19 18 17 21 21 C 1.38810 * 120.00444 * 5.17980 * 19 18 17 22 22 N 1.31625 * 119.99770 * 5.22328 * 21 19 18 23 23 Si 1.86799 * 120.00349 * 185.22272 * 21 19 18 24 24 H 1.48498 * 109.47244 * 94.99948 * 23 21 19 25 25 H 1.48503 * 109.47042 * 215.00313 * 23 21 19 26 26 H 1.48503 * 109.46995 * 334.99919 * 23 21 19 27 27 C 1.47430 * 108.70081 * 358.93884 * 18 17 16 28 28 H 1.09000 * 109.46836 * 300.00011 * 1 2 3 29 29 H 1.09005 * 109.46950 * 59.99847 * 1 2 3 30 30 H 1.08993 * 109.46891 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47671 * 240.00346 * 2 1 3 32 32 H 1.08998 * 109.47240 * 119.99898 * 2 1 3 33 33 H 1.08004 * 126.53531 * 0.06322 * 7 6 4 34 34 H 1.07997 * 126.53662 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00041 * 359.97438 * 11 10 9 36 36 H 0.96999 * 119.99854 * 180.02562 * 11 10 9 37 37 H 1.08996 * 110.71784 * 35.78779 * 16 14 3 38 38 H 1.08998 * 110.72618 * 159.06542 * 16 14 3 39 39 H 1.08999 * 109.88232 * 97.21964 * 17 16 14 40 40 H 1.08997 * 109.88412 * 218.38867 * 17 16 14 41 41 H 0.96996 * 120.00109 * 179.97438 * 22 21 19 42 42 H 1.08994 * 110.36385 * 265.29078 * 27 18 17 43 43 H 1.09001 * 110.36603 * 142.96731 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1173 2.0610 1.1597 5 8 2.4318 3.2357 1.1509 6 6 1.8447 1.3810 2.4375 7 6 2.0194 1.9175 3.6812 8 6 1.6426 0.9351 4.6056 9 6 1.2535 -0.1590 3.8867 10 6 0.7761 -1.4341 4.4487 11 7 0.4210 -2.4417 3.6270 12 8 0.7025 -1.5777 5.6541 13 8 1.3857 0.1241 2.5781 14 6 2.3990 2.0236 -1.2603 15 1 2.0983 1.4150 -2.1131 16 6 3.9219 2.3182 -1.2967 17 6 4.0358 3.6461 -0.5186 18 7 2.7178 4.2957 -0.5686 19 6 2.3933 5.4887 0.0201 20 1 1.3732 5.8427 -0.0035 21 6 3.3753 6.2431 0.6473 22 7 4.6344 5.8642 0.5880 23 14 2.9099 7.7959 1.5755 24 1 2.7338 7.4780 3.0153 25 1 3.9864 8.8070 1.4198 26 1 1.6396 8.3373 1.0290 27 6 1.8038 3.4505 -1.3583 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3789 2.9102 3.9085 34 1 1.6564 1.0257 5.6817 35 1 0.4794 -2.3270 2.6656 36 1 0.1063 -3.2812 3.9971 37 1 4.4796 1.5279 -0.7944 38 1 4.2664 2.4422 -2.3234 39 1 4.3117 3.4465 0.5168 40 1 4.7830 4.2870 -0.9866 41 1 5.3207 6.3915 1.0260 42 1 1.7823 3.7821 -2.3964 43 1 0.8013 3.4735 -0.9310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033896625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:23 Heat of formation + Delta-G solvation = 29.179742 kcal Electronic energy + Delta-G solvation = -28912.201597 eV Core-core repulsion = 24962.550811 eV Total energy + Delta-G solvation = -3949.650787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.75258 -39.85081 -39.30651 -36.23981 -35.49737 -34.11517 -32.95863 -32.24029 -30.18107 -29.94201 -28.82770 -27.22582 -24.97304 -24.12457 -23.14639 -22.20318 -21.05563 -20.52195 -19.89351 -19.06606 -18.20103 -17.26330 -17.06479 -16.58447 -16.38685 -15.73130 -15.19376 -14.80626 -14.50653 -14.40797 -14.10275 -13.97277 -13.66280 -13.34233 -13.09307 -12.94875 -12.82507 -12.35597 -11.96194 -11.96029 -11.74715 -11.64415 -11.08947 -10.76974 -10.75805 -10.74126 -10.69159 -10.13391 -10.10871 -9.98255 -9.93943 -9.78050 -9.44238 -9.09556 -8.62255 -8.45878 -7.98218 -6.32233 -5.44494 -2.71200 0.75553 2.08488 2.43344 3.00308 3.16003 3.40282 3.53241 3.58400 3.59652 3.70555 4.52365 4.70566 4.84157 4.92971 5.00852 5.19696 5.37055 5.39573 5.51791 5.55507 5.58411 5.65664 5.74922 5.84834 5.87087 5.92957 5.98823 6.20543 6.23221 6.28855 6.38258 6.47186 6.53168 6.59736 6.65437 6.71534 7.02817 7.17630 7.73183 7.79770 7.83310 7.85753 8.03394 8.50684 8.81226 9.47009 10.09018 10.74564 11.67873 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.004677 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.229920 B = 5985.816907 C = 7226.250311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.603 5.603 4 C 0.539 3.461 5 O -0.371 6.371 6 C -0.008 4.008 7 C -0.154 4.154 8 C -0.118 4.118 9 C -0.090 4.090 10 C 0.613 3.387 11 N -0.845 5.845 12 O -0.525 6.525 13 O -0.151 6.151 14 C 0.133 3.867 15 H 0.087 0.913 16 C -0.161 4.161 17 C 0.186 3.814 18 N -0.567 5.567 19 C -0.190 4.190 20 H 0.067 0.933 21 C -0.008 4.008 22 N -0.924 5.924 23 Si 0.900 3.100 24 H -0.294 1.294 25 H -0.295 1.295 26 H -0.285 1.285 27 C 0.130 3.870 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.407 0.593 36 H 0.408 0.592 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.245 0.755 42 H 0.025 0.975 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -18.491 -0.697 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.340 5.340 4 C 0.321 3.679 5 O -0.235 6.235 6 C -0.063 4.063 7 C -0.174 4.174 8 C -0.139 4.139 9 C -0.143 4.143 10 C 0.398 3.602 11 N -0.408 5.408 12 O -0.402 6.402 13 O -0.048 6.048 14 C 0.029 3.971 15 H 0.105 0.895 16 C -0.200 4.200 17 C 0.061 3.939 18 N -0.292 5.292 19 C -0.319 4.319 20 H 0.085 0.915 21 C -0.203 4.203 22 N -0.573 5.573 23 Si 0.733 3.267 24 H -0.221 1.221 25 H -0.222 1.222 26 H -0.211 1.211 27 C 0.002 3.998 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.236 0.764 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.043 0.957 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.927 -17.725 -0.038 19.031 hybrid contribution -0.361 0.404 0.474 0.720 sum -7.287 -17.322 0.436 18.797 Atomic orbital electron populations 1.22206 0.96189 1.01517 1.02573 1.21647 0.94300 0.83239 1.02687 1.47695 1.66651 1.13395 1.06247 1.17435 0.81974 0.87380 0.81133 1.91769 1.38712 1.10452 1.82570 1.23598 1.02593 0.82176 0.97907 1.22011 1.03336 1.01829 0.90267 1.21942 0.99150 0.91429 1.01335 1.22132 1.12100 0.97677 0.82341 1.16661 0.76442 0.81340 0.85716 1.43678 1.69294 1.16891 1.10929 1.90901 1.54590 1.81054 1.13672 1.84312 1.65325 1.30010 1.25168 1.22363 0.96015 0.94919 0.83796 0.89529 1.23401 0.94435 1.01047 1.01109 1.21150 0.88173 0.87444 0.97093 1.44144 1.06556 1.20542 1.57999 1.18794 0.93219 0.93034 1.26811 0.91496 1.24563 0.95377 0.98579 1.01802 1.69939 0.98888 1.39698 1.48801 0.86255 0.76856 0.83372 0.80251 1.22149 1.22210 1.21093 1.21773 0.94415 0.88553 0.95054 0.92551 0.92330 0.92103 0.90525 0.90082 0.81442 0.82030 0.76411 0.76046 0.92355 0.91581 0.94011 0.93511 0.94427 0.95731 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.78 37.16 0.36 -1.24 16 2 C 0.10 1.12 5.70 -4.04 -0.02 1.10 16 3 N -0.60 -9.25 2.57 -164.98 -0.42 -9.68 16 4 C 0.54 10.05 7.06 -12.58 -0.09 9.96 16 5 O -0.37 -8.78 8.84 5.27 0.05 -8.73 16 6 C -0.01 -0.13 6.61 -36.51 -0.24 -0.37 16 7 C -0.15 -2.47 10.60 -39.50 -0.42 -2.89 16 8 C -0.12 -1.64 10.60 -39.50 -0.42 -2.06 16 9 C -0.09 -1.16 7.14 -36.50 -0.26 -1.42 16 10 C 0.61 7.19 8.08 -12.58 -0.10 7.09 16 11 N -0.84 -5.99 8.87 30.40 0.27 -5.72 16 12 O -0.52 -7.83 17.70 5.27 0.09 -7.74 16 13 O -0.15 -1.94 5.97 4.37 0.03 -1.92 16 14 C 0.13 2.15 3.77 -65.79 -0.25 1.90 16 15 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 16 C -0.16 -2.91 6.52 -24.90 -0.16 -3.07 16 17 C 0.19 4.53 4.24 -3.06 -0.01 4.52 16 18 N -0.57 -14.34 1.73 -170.07 -0.29 -14.64 16 19 C -0.19 -5.38 8.73 -15.06 -0.13 -5.52 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.24 5.46 -17.43 -0.10 -0.34 16 22 N -0.92 -27.90 10.41 55.49 0.58 -27.32 16 23 Si 0.90 23.13 29.56 -169.99 -5.02 18.10 16 24 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.13 2.63 6.18 -2.52 -0.02 2.61 16 28 H 0.06 0.65 7.23 -51.93 -0.38 0.27 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.08 0.85 5.29 -51.93 -0.27 0.57 16 33 H 0.17 2.83 8.06 -52.48 -0.42 2.41 16 34 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.41 2.09 8.59 -40.82 -0.35 1.74 16 36 H 0.41 2.08 8.93 -40.82 -0.36 1.72 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.04 1.15 6.27 -51.93 -0.33 0.83 16 40 H 0.05 1.29 7.10 -51.93 -0.37 0.93 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -34.93 347.78 -7.15 -42.08 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.81 Total: 0.04 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -1.85 Total: 10.28 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.13 Total: -57.36 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.93 -7.15 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033896625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.265 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds