Wall clock time and date at job start Tue Mar 31 2020 12:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46980 * 2 1 4 4 C 1.34778 * 119.99853 * 83.57805 * 3 2 1 5 5 O 1.21594 * 120.00029 * 184.27865 * 4 3 2 6 6 C 1.47486 * 119.99950 * 4.28135 * 4 3 2 7 7 C 1.37813 * 126.77775 * 346.81433 * 6 4 3 8 8 O 1.33494 * 108.34549 * 179.76752 * 7 6 4 9 9 C 1.34887 * 109.88801 * 0.38217 * 8 7 6 10 10 C 1.46771 * 125.65402 * 179.88223 * 9 8 7 11 11 N 1.34774 * 120.00167 * 359.41250 * 10 9 8 12 12 O 1.21686 * 120.00012 * 179.68914 * 10 9 8 13 13 C 1.36057 * 108.68949 * 359.61209 * 9 8 7 14 14 C 1.46500 * 120.00330 * 263.57797 * 3 2 1 15 15 H 1.09006 * 110.88328 * 9.60098 * 14 3 2 16 16 C 1.55149 * 111.00695 * 245.72019 * 14 3 2 17 17 C 1.54324 * 102.94494 * 277.42971 * 16 14 3 18 18 N 1.47024 * 107.26582 * 337.80451 * 17 16 14 19 19 C 1.36942 * 125.64767 * 178.99038 * 18 17 16 20 20 H 1.08001 * 119.99949 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99919 * 359.97248 * 19 18 17 22 22 N 1.31617 * 119.99560 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99903 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47161 * 60.00046 * 23 21 19 25 25 H 1.48496 * 109.46994 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47101 * 300.00145 * 23 21 19 27 27 C 1.47421 * 108.70570 * 358.93949 * 18 17 16 28 28 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47414 * 300.00015 * 1 2 3 30 30 H 1.09003 * 109.47714 * 59.99824 * 1 2 3 31 31 H 1.09000 * 109.46970 * 240.00606 * 2 1 3 32 32 H 1.08999 * 109.47019 * 120.00341 * 2 1 3 33 33 H 1.07994 * 125.82307 * 0.02562 * 7 6 4 34 34 H 0.96998 * 120.00007 * 180.27521 * 11 10 9 35 35 H 0.96999 * 119.99824 * 0.27667 * 11 10 9 36 36 H 1.08003 * 126.68450 * 180.23034 * 13 9 8 37 37 H 1.09004 * 110.72042 * 35.78496 * 16 14 3 38 38 H 1.08997 * 110.72536 * 159.05832 * 16 14 3 39 39 H 1.09000 * 109.88583 * 97.21988 * 17 16 14 40 40 H 1.09001 * 109.88341 * 218.39141 * 17 16 14 41 41 H 0.97004 * 119.99717 * 179.97438 * 22 21 19 42 42 H 1.09000 * 110.36869 * 265.28947 * 27 18 17 43 43 H 1.08998 * 110.36431 * 142.96577 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1198 2.0601 1.1599 5 8 2.4505 3.2302 1.1526 6 6 1.8299 1.3836 2.4380 7 6 1.2105 0.1638 2.6040 8 8 1.1409 -0.0977 3.9113 9 6 1.6881 0.9168 4.6119 10 6 1.7918 0.9885 6.0742 11 7 1.3053 -0.0125 6.8342 12 8 2.3125 1.9542 6.6006 13 6 2.1333 1.8599 3.7380 14 6 2.3962 2.0246 -1.2607 15 1 2.1005 1.4129 -2.1131 16 6 3.9172 2.3289 -1.2957 17 6 4.0217 3.6584 -0.5190 18 7 2.6996 4.2994 -0.5712 19 6 2.3667 5.4910 0.0157 20 1 1.3636 5.8793 -0.0816 21 6 3.3186 6.2000 0.7357 22 7 4.5411 5.7270 0.8538 23 14 2.8642 7.8251 1.5368 24 1 1.7662 7.6062 2.5123 25 1 4.0491 8.3784 2.2404 26 1 2.4163 8.7829 0.4941 27 6 1.7920 3.4475 -1.3610 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8476 -0.4739 1.8116 34 1 1.3702 0.0367 7.8007 35 1 0.8902 -0.7823 6.4146 36 1 2.6225 2.7901 3.9866 37 1 4.4795 1.5428 -0.7918 38 1 4.2621 2.4538 -2.3221 39 1 4.2977 3.4617 0.5170 40 1 4.7653 4.3036 -0.9869 41 1 5.2064 6.2226 1.3566 42 1 1.7695 3.7778 -2.3995 43 1 0.7890 3.4646 -0.9348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033907484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:31 Heat of formation + Delta-G solvation = 49.724190 kcal Electronic energy + Delta-G solvation = -28800.569776 eV Core-core repulsion = 24851.809864 eV Total energy + Delta-G solvation = -3948.759912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.76446 -39.77053 -39.20146 -36.16645 -35.62862 -33.95964 -32.85178 -32.20559 -30.35743 -29.68330 -28.76792 -27.08982 -24.51227 -23.79336 -23.67484 -22.66094 -20.78378 -20.52346 -19.78706 -18.96774 -17.75108 -17.08697 -16.94192 -16.47164 -16.43007 -15.98994 -15.21672 -14.67718 -14.46153 -14.38912 -14.34521 -13.66985 -13.61771 -13.36860 -13.11685 -12.99153 -12.38350 -12.27610 -11.90609 -11.84822 -11.63641 -11.57493 -11.29322 -10.67488 -10.65739 -10.61920 -10.54827 -10.02384 -9.98038 -9.92813 -9.77628 -9.58058 -9.35317 -8.76664 -8.59739 -8.34310 -7.80561 -6.19093 -5.34241 -2.59020 0.97843 1.92208 2.58253 3.09193 3.23510 3.53613 3.60289 3.65450 3.65731 4.00446 4.54895 4.70622 4.79499 4.80945 4.90549 5.06333 5.23281 5.35879 5.50639 5.56785 5.61383 5.66981 5.70904 5.76172 5.85940 5.94890 6.08881 6.10109 6.27489 6.36121 6.45027 6.55690 6.64452 6.68304 6.68562 6.80633 7.13277 7.30082 7.83183 7.94862 7.97774 8.00791 8.18162 8.62359 9.17263 9.58051 10.20331 10.86075 11.79110 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.005637 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.173115 B = 4966.018826 C = 6938.104279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.088 3.912 3 N -0.608 5.608 4 C 0.520 3.480 5 O -0.384 6.384 6 C -0.210 4.210 7 C -0.009 4.009 8 O -0.164 6.164 9 C -0.106 4.106 10 C 0.612 3.388 11 N -0.847 5.847 12 O -0.518 6.518 13 C -0.055 4.055 14 C 0.135 3.865 15 H 0.082 0.918 16 C -0.161 4.161 17 C 0.190 3.810 18 N -0.566 5.566 19 C -0.192 4.192 20 H 0.065 0.935 21 C -0.005 4.005 22 N -0.921 5.921 23 Si 0.898 3.102 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.291 1.291 27 C 0.131 3.869 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.240 0.760 34 H 0.407 0.593 35 H 0.405 0.595 36 H 0.170 0.830 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.030 0.970 41 H 0.245 0.755 42 H 0.022 0.978 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 -20.664 2.025 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.036 4.036 3 N -0.346 5.346 4 C 0.304 3.696 5 O -0.249 6.249 6 C -0.215 4.215 7 C -0.079 4.079 8 O -0.059 6.059 9 C -0.157 4.157 10 C 0.397 3.603 11 N -0.411 5.411 12 O -0.395 6.395 13 C -0.076 4.076 14 C 0.031 3.969 15 H 0.100 0.900 16 C -0.200 4.200 17 C 0.066 3.934 18 N -0.292 5.292 19 C -0.321 4.321 20 H 0.083 0.917 21 C -0.201 4.201 22 N -0.571 5.571 23 Si 0.731 3.269 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.218 1.218 27 C 0.003 3.997 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.255 0.745 34 H 0.239 0.761 35 H 0.234 0.766 36 H 0.188 0.812 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.858 -19.312 2.519 21.001 hybrid contribution -0.480 0.346 0.574 0.824 sum -8.338 -18.966 3.092 20.947 Atomic orbital electron populations 1.22509 0.96492 1.02058 1.03758 1.21935 0.93912 0.84702 1.03053 1.47649 1.67835 1.12624 1.06478 1.17639 0.81999 0.87971 0.81979 1.91694 1.37417 1.11491 1.84263 1.21280 1.07318 0.96579 0.96276 1.26732 1.00531 0.97962 0.82706 1.83872 1.62557 1.41049 1.18406 1.21702 1.10444 0.91128 0.92391 1.16531 0.77784 0.82702 0.83276 1.43655 1.63370 1.23256 1.10825 1.90965 1.44245 1.32286 1.71961 1.22025 0.96283 0.99391 0.89883 1.22316 0.95867 0.94759 0.83945 0.89967 1.23398 0.94655 1.01240 1.00750 1.21110 0.87515 0.87093 0.97668 1.44106 1.06238 1.20645 1.58182 1.18715 0.95271 0.93366 1.24711 0.91676 1.24545 0.96087 0.98407 1.01022 1.69925 1.02425 1.38415 1.46296 0.86396 0.76820 0.84380 0.79345 1.21715 1.21971 1.21812 1.21752 0.94412 0.88675 0.94868 0.91498 0.91798 0.91213 0.90107 0.90197 0.74488 0.76135 0.76598 0.81221 0.92465 0.91975 0.92468 0.95189 0.94490 0.96077 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.80 37.16 0.33 -1.26 16 2 C 0.09 0.87 5.62 -4.04 -0.02 0.85 16 3 N -0.61 -9.46 2.57 -164.91 -0.42 -9.88 16 4 C 0.52 10.15 7.08 -12.49 -0.09 10.06 16 5 O -0.38 -9.72 8.90 5.28 0.05 -9.67 16 6 C -0.21 -3.47 5.98 -104.95 -0.63 -4.09 16 7 C -0.01 -0.10 8.80 30.58 0.27 0.17 16 8 O -0.16 -1.92 10.33 6.19 0.06 -1.86 16 9 C -0.11 -1.53 7.09 -36.92 -0.26 -1.79 16 10 C 0.61 8.46 8.06 -12.81 -0.10 8.36 16 11 N -0.85 -7.11 8.87 30.28 0.27 -6.84 16 12 O -0.52 -9.34 17.68 5.20 0.09 -9.24 16 13 C -0.05 -0.97 10.44 -39.03 -0.41 -1.38 16 14 C 0.14 2.27 3.77 -65.79 -0.25 2.02 16 15 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 16 C -0.16 -3.05 6.52 -24.90 -0.16 -3.21 16 17 C 0.19 4.85 4.21 -3.06 -0.01 4.84 16 18 N -0.57 -14.93 1.74 -170.07 -0.30 -15.23 16 19 C -0.19 -5.66 8.78 -15.06 -0.13 -5.79 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -28.91 10.31 55.49 0.57 -28.34 16 23 Si 0.90 24.08 29.55 -169.99 -5.02 19.06 16 24 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 25 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 27 C 0.13 2.75 6.21 -2.53 -0.02 2.74 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.62 6.45 -51.93 -0.33 0.29 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.65 7.91 -51.93 -0.41 0.24 16 32 H 0.08 0.70 4.64 -51.93 -0.24 0.46 16 33 H 0.24 1.92 3.33 -52.49 -0.17 1.75 16 34 H 0.41 2.65 8.93 -40.82 -0.36 2.29 16 35 H 0.41 2.34 8.57 -40.82 -0.35 1.99 16 36 H 0.17 3.43 8.06 -52.48 -0.42 3.00 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.66 5.78 -51.93 -0.30 1.36 16 40 H 0.03 0.86 7.50 -51.93 -0.39 0.47 16 41 H 0.24 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -38.15 342.17 -6.61 -44.76 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.48 Total: 0.85 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -1.58 Total: 11.24 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.12 Total: -60.29 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.20 Total: -20.77 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.02 Total: 19.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -38.15 -6.61 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033907484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.481 kcal (2) G-P(sol) polarization free energy of solvation -38.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds