Wall clock time and date at job start Tue Mar 31 2020 12:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46980 * 2 1 4 4 C 1.34778 * 119.99853 * 83.57805 * 3 2 1 5 5 O 1.21594 * 120.00029 * 184.27865 * 4 3 2 6 6 C 1.47486 * 119.99950 * 4.28135 * 4 3 2 7 7 C 1.37813 * 126.77775 * 346.81433 * 6 4 3 8 8 O 1.33494 * 108.34549 * 179.76752 * 7 6 4 9 9 C 1.34887 * 109.88801 * 0.38217 * 8 7 6 10 10 C 1.46771 * 125.65402 * 179.88223 * 9 8 7 11 11 N 1.34774 * 120.00167 * 359.41250 * 10 9 8 12 12 O 1.21686 * 120.00012 * 179.68914 * 10 9 8 13 13 C 1.36057 * 108.68949 * 359.61209 * 9 8 7 14 14 C 1.46500 * 120.00330 * 263.57797 * 3 2 1 15 15 H 1.09006 * 110.88328 * 9.60098 * 14 3 2 16 16 C 1.55149 * 111.00695 * 245.72019 * 14 3 2 17 17 C 1.54324 * 102.94494 * 277.42971 * 16 14 3 18 18 N 1.47024 * 107.26582 * 337.80451 * 17 16 14 19 19 C 1.36942 * 125.64767 * 178.99038 * 18 17 16 20 20 H 1.08001 * 119.99949 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99919 * 359.97248 * 19 18 17 22 22 N 1.31617 * 119.99560 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99903 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47161 * 60.00046 * 23 21 19 25 25 H 1.48496 * 109.46994 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47101 * 300.00145 * 23 21 19 27 27 C 1.47421 * 108.70570 * 358.93949 * 18 17 16 28 28 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47414 * 300.00015 * 1 2 3 30 30 H 1.09003 * 109.47714 * 59.99824 * 1 2 3 31 31 H 1.09000 * 109.46970 * 240.00606 * 2 1 3 32 32 H 1.08999 * 109.47019 * 120.00341 * 2 1 3 33 33 H 1.07994 * 125.82307 * 0.02562 * 7 6 4 34 34 H 0.96998 * 120.00007 * 180.27521 * 11 10 9 35 35 H 0.96999 * 119.99824 * 0.27667 * 11 10 9 36 36 H 1.08003 * 126.68450 * 180.23034 * 13 9 8 37 37 H 1.09004 * 110.72042 * 35.78496 * 16 14 3 38 38 H 1.08997 * 110.72536 * 159.05832 * 16 14 3 39 39 H 1.09000 * 109.88583 * 97.21988 * 17 16 14 40 40 H 1.09001 * 109.88341 * 218.39141 * 17 16 14 41 41 H 0.97004 * 119.99717 * 179.97438 * 22 21 19 42 42 H 1.09000 * 110.36869 * 265.28947 * 27 18 17 43 43 H 1.08998 * 110.36431 * 142.96577 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1198 2.0601 1.1599 5 8 2.4505 3.2302 1.1526 6 6 1.8299 1.3836 2.4380 7 6 1.2105 0.1638 2.6040 8 8 1.1409 -0.0977 3.9113 9 6 1.6881 0.9168 4.6119 10 6 1.7918 0.9885 6.0742 11 7 1.3053 -0.0125 6.8342 12 8 2.3125 1.9542 6.6006 13 6 2.1333 1.8599 3.7380 14 6 2.3962 2.0246 -1.2607 15 1 2.1005 1.4129 -2.1131 16 6 3.9172 2.3289 -1.2957 17 6 4.0217 3.6584 -0.5190 18 7 2.6996 4.2994 -0.5712 19 6 2.3667 5.4910 0.0157 20 1 1.3636 5.8793 -0.0816 21 6 3.3186 6.2000 0.7357 22 7 4.5411 5.7270 0.8538 23 14 2.8642 7.8251 1.5368 24 1 1.7662 7.6062 2.5123 25 1 4.0491 8.3784 2.2404 26 1 2.4163 8.7829 0.4941 27 6 1.7920 3.4475 -1.3610 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8476 -0.4739 1.8116 34 1 1.3702 0.0367 7.8007 35 1 0.8902 -0.7823 6.4146 36 1 2.6225 2.7901 3.9866 37 1 4.4795 1.5428 -0.7918 38 1 4.2621 2.4538 -2.3221 39 1 4.2977 3.4617 0.5170 40 1 4.7653 4.3036 -0.9869 41 1 5.2064 6.2226 1.3566 42 1 1.7695 3.7778 -2.3995 43 1 0.7890 3.4646 -0.9348 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033907484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:27 Heat of formation + Delta-G solvation = 18.922227 kcal Electronic energy + Delta-G solvation = -28801.905449 eV Core-core repulsion = 24851.809864 eV Total energy + Delta-G solvation = -3950.095586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -43.91822 -41.18282 -40.36205 -37.84274 -36.90162 -35.00114 -34.40913 -33.79421 -31.84458 -30.80073 -30.49912 -28.76716 -26.42697 -25.09949 -24.84346 -23.64519 -22.10596 -21.83971 -21.66091 -20.15550 -19.02428 -18.48429 -18.10727 -17.97101 -17.57467 -17.29070 -16.70574 -16.44379 -15.98510 -15.66021 -15.61631 -15.55341 -15.08155 -14.48658 -14.31370 -14.23896 -13.68923 -13.58660 -13.46176 -13.39073 -13.19678 -12.83623 -12.74703 -12.61266 -12.19957 -12.15309 -12.02882 -11.76316 -11.65424 -11.54681 -11.37378 -11.08309 -10.91018 -10.51966 -10.28824 -9.76552 -9.31823 -8.27742 -7.63522 -4.85086 -0.14802 0.64594 1.38177 1.43518 1.44369 1.47470 1.93020 2.10453 2.52384 2.58879 2.62973 3.48324 3.55043 3.60350 3.80426 3.88807 4.03348 4.05484 4.21159 4.33566 4.39591 4.42260 4.46102 4.59208 4.72096 4.76516 4.85874 4.93276 4.99484 5.02136 5.09313 5.13432 5.20480 5.46758 5.49851 5.53514 5.71767 5.84878 5.99873 6.06733 6.24668 6.42789 6.74007 7.07305 7.33599 7.78306 8.06072 8.68754 9.48492 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.005637 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.173115 B = 4966.018826 C = 6938.104279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.077 3.923 3 N -0.602 5.602 4 C 0.516 3.484 5 O -0.464 6.464 6 C -0.249 4.249 7 C 0.048 3.952 8 O -0.136 6.136 9 C -0.091 4.091 10 C 0.610 3.390 11 N -0.811 5.811 12 O -0.570 6.570 13 C -0.097 4.097 14 C 0.151 3.849 15 H 0.143 0.857 16 C -0.146 4.146 17 C 0.202 3.798 18 N -0.580 5.580 19 C -0.186 4.186 20 H 0.060 0.940 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.953 3.047 24 H -0.294 1.294 25 H -0.300 1.300 26 H -0.276 1.276 27 C 0.123 3.877 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.287 0.713 34 H 0.421 0.579 35 H 0.423 0.577 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.011 0.989 40 H -0.019 1.019 41 H 0.232 0.768 42 H 0.036 0.964 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.096 -25.658 0.644 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.044 4.044 3 N -0.338 5.338 4 C 0.302 3.698 5 O -0.333 6.333 6 C -0.253 4.253 7 C -0.023 4.023 8 O -0.029 6.029 9 C -0.142 4.142 10 C 0.395 3.605 11 N -0.376 5.376 12 O -0.451 6.451 13 C -0.119 4.119 14 C 0.047 3.953 15 H 0.161 0.839 16 C -0.186 4.186 17 C 0.077 3.923 18 N -0.305 5.305 19 C -0.317 4.317 20 H 0.078 0.922 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.784 3.216 24 H -0.222 1.222 25 H -0.226 1.226 26 H -0.202 1.202 27 C -0.003 4.003 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.301 0.699 34 H 0.255 0.745 35 H 0.256 0.744 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.029 0.971 40 H -0.001 1.001 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.610 -24.438 1.115 26.665 hybrid contribution 0.222 1.725 0.994 2.004 sum -10.388 -22.713 2.109 25.064 Atomic orbital electron populations 1.22505 0.94810 1.04581 1.02723 1.22397 0.95150 0.81271 1.05566 1.47731 1.66637 1.14681 1.04786 1.18129 0.80511 0.87505 0.83699 1.91657 1.41226 1.14829 1.85636 1.21046 1.10763 0.98995 0.94526 1.27396 0.96243 0.95646 0.83062 1.83929 1.61278 1.39405 1.18320 1.21524 1.09463 0.90644 0.92619 1.16524 0.77803 0.83064 0.83146 1.43372 1.60948 1.21990 1.11286 1.90948 1.46892 1.34655 1.72630 1.21792 0.98630 0.99273 0.92172 1.22277 0.93333 0.93346 0.86361 0.83920 1.23233 0.97022 0.97409 1.00890 1.20744 0.86246 0.89572 0.95730 1.44249 1.07723 1.20449 1.58039 1.18976 0.94655 0.94485 1.23551 0.92173 1.25212 0.96368 1.01653 1.02709 1.70184 1.03129 1.39302 1.47514 0.85500 0.75938 0.81532 0.78581 1.22177 1.22635 1.20184 1.21998 0.93242 0.90864 0.94228 0.87053 0.93475 0.91831 0.86466 0.88766 0.69891 0.74530 0.74445 0.85879 0.91223 0.89609 0.97106 1.00054 0.95885 0.94671 0.95768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 8.80 71.98 0.63 -1.36 16 2 C 0.08 1.07 5.62 86.38 0.49 1.55 16 3 N -0.60 -17.06 2.57 -793.91 -2.04 -19.11 16 4 C 0.52 20.40 7.08 86.68 0.61 21.02 16 5 O -0.46 -25.00 8.90 -4.01 -0.04 -25.03 16 6 C -0.25 -8.21 5.98 -20.08 -0.12 -8.33 16 7 C 0.05 0.94 8.80 67.72 0.60 1.54 16 8 O -0.14 -2.71 10.33 -0.77 -0.01 -2.72 16 9 C -0.09 -2.60 7.09 23.99 0.17 -2.43 16 10 C 0.61 16.71 8.06 86.47 0.70 17.40 16 11 N -0.81 -11.61 8.87 -176.33 -1.56 -13.18 16 12 O -0.57 -21.57 17.68 -4.30 -0.08 -21.65 16 13 C -0.10 -3.68 10.44 22.63 0.24 -3.44 16 14 C 0.15 4.59 3.77 46.38 0.17 4.76 16 15 H 0.14 2.77 7.90 -2.38 -0.02 2.76 16 16 C -0.15 -5.34 6.52 31.78 0.21 -5.13 16 17 C 0.20 10.86 4.21 86.73 0.37 11.22 16 18 N -0.58 -31.90 1.74 -691.98 -1.20 -33.10 16 19 C -0.19 -11.60 8.78 84.03 0.74 -10.87 16 20 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 21 C -0.07 -4.36 5.49 84.86 0.47 -3.90 16 22 N -0.95 -64.36 10.31 21.65 0.22 -64.13 16 23 Si 0.95 52.58 29.55 68.60 2.03 54.60 16 24 H -0.29 -16.21 7.11 99.48 0.71 -15.51 16 25 H -0.30 -16.66 7.11 99.48 0.71 -15.96 16 26 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 27 C 0.12 5.09 6.21 86.86 0.54 5.63 16 28 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.05 0.68 6.45 -2.39 -0.02 0.67 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.12 0.94 7.91 -2.39 -0.02 0.92 16 32 H 0.09 1.05 4.64 -2.39 -0.01 1.04 16 33 H 0.29 2.76 3.33 -2.91 -0.01 2.75 16 34 H 0.42 4.45 8.93 -92.71 -0.83 3.62 16 35 H 0.42 3.22 8.57 -92.71 -0.79 2.43 16 36 H 0.12 5.77 8.06 -2.91 -0.02 5.75 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.01 0.69 5.78 -2.39 -0.01 0.67 16 40 H -0.02 -1.15 7.50 -2.39 -0.02 -1.17 16 41 H 0.23 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -97.87 342.17 2.58 -95.29 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -0.54 Total: 1.37 kcal Atomic # 6 Polarization: 21.86 SS G_CDS: 5.80 Total: 27.66 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -4.59 Total: -129.52 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -0.12 Total: -49.40 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 2.03 Total: 54.60 kcal Total: -97.87 2.58 -95.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033907484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.214 kcal (2) G-P(sol) polarization free energy of solvation -97.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds