Wall clock time and date at job start Tue Mar 31 2020 13:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35686 * 116.99764 * 2 1 4 4 C 1.38898 * 119.62051 * 180.25703 * 3 2 1 5 5 C 1.39574 * 118.94528 * 180.29244 * 4 3 2 6 6 C 1.48162 * 120.89162 * 179.72951 * 5 4 3 7 7 O 1.21514 * 120.00074 * 359.72151 * 6 5 4 8 8 N 1.34772 * 120.00023 * 179.72011 * 6 5 4 9 9 C 1.46502 * 120.00377 * 179.72465 * 8 6 5 10 10 C 1.52997 * 109.47431 * 180.27390 * 9 8 6 11 11 H 1.09000 * 109.51200 * 304.99690 * 10 9 8 12 12 C 1.53293 * 109.51141 * 184.89938 * 10 9 8 13 13 N 1.47152 * 108.38424 * 187.77492 * 12 10 9 14 14 C 1.36938 * 120.98336 * 230.55649 * 13 12 10 15 15 H 1.08000 * 120.00018 * 26.23543 * 14 13 12 16 16 C 1.38813 * 120.00295 * 206.23277 * 14 13 12 17 17 N 1.31623 * 119.99605 * 16.91957 * 16 14 13 18 18 Si 1.86790 * 120.00160 * 196.91510 * 16 14 13 19 19 H 1.48504 * 109.47579 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47121 * 120.00175 * 18 16 14 21 21 H 1.48500 * 109.47500 * 240.00288 * 18 16 14 22 22 C 1.47145 * 118.03664 * 50.53448 * 13 12 10 23 23 C 1.53292 * 108.38554 * 309.46654 * 22 13 12 24 24 O 1.42959 * 109.26868 * 52.27759 * 23 22 13 25 25 C 1.39966 * 118.21670 * 359.45536 * 5 4 3 26 26 C 1.37978 * 119.13369 * 0.27600 * 25 5 4 27 27 N 1.31913 * 120.97773 * 0.02562 * 26 25 5 28 28 H 1.09000 * 109.47266 * 300.00575 * 1 2 3 29 29 H 1.08997 * 109.46986 * 60.00442 * 1 2 3 30 30 H 1.09005 * 109.47476 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.52845 * 0.04041 * 4 3 2 32 32 H 0.97004 * 120.00142 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46623 * 300.27939 * 9 8 6 34 34 H 1.09004 * 109.46571 * 60.27190 * 9 8 6 35 35 H 1.08996 * 109.68215 * 307.49973 * 12 10 9 36 36 H 1.09004 * 109.68146 * 68.01351 * 12 10 9 37 37 H 0.97000 * 119.99843 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.68136 * 69.18634 * 22 13 12 39 39 H 1.08998 * 109.68213 * 189.70576 * 22 13 12 40 40 H 1.09005 * 109.51673 * 172.22547 * 23 22 13 41 41 H 1.09006 * 109.51585 * 292.37564 * 23 22 13 42 42 H 1.08000 * 120.43481 * 180.29899 * 25 5 4 43 43 H 1.07995 * 119.51272 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 -0.0054 5 6 4.0514 2.5236 0.0009 6 6 5.5283 2.6416 0.0015 7 8 6.2178 1.6409 0.0016 8 7 6.1071 3.8587 0.0019 9 6 7.5674 3.9754 0.0086 10 6 7.9609 5.4539 0.0146 11 1 7.4887 5.9597 -0.8277 12 6 9.4843 5.5788 -0.1019 13 7 9.8505 6.9905 0.0941 14 6 10.6654 7.6375 -0.7961 15 1 10.7118 7.3081 -1.8236 16 6 11.4318 8.7167 -0.3780 17 7 11.6415 8.9168 0.9059 18 14 12.1654 9.8850 -1.6374 19 1 11.7843 9.4436 -3.0032 20 1 11.6497 11.2571 -1.3992 21 1 13.6450 9.8835 -1.5111 22 6 9.3149 7.6865 1.2747 23 6 7.7998 7.4589 1.3241 24 8 7.5301 6.0577 1.2367 25 6 3.2394 3.6636 0.0007 26 6 1.8680 3.5116 0.0002 27 7 1.3178 2.3127 0.0004 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0231 0.3684 -0.0103 32 1 5.5567 4.6575 0.0015 33 1 7.9666 3.4895 0.8989 34 1 7.9743 3.4947 -0.8810 35 1 9.9623 4.9660 0.6623 36 1 9.8051 5.2495 -1.0902 37 1 12.1773 9.6707 1.1981 38 1 9.7758 7.2859 2.1776 39 1 9.5241 8.7535 1.1982 40 1 7.4034 7.8481 2.2620 41 1 7.3269 7.9728 0.4872 42 1 3.6805 4.6494 0.0006 43 1 1.2357 4.3871 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035424688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:23 Heat of formation + Delta-G solvation = -49.199946 kcal Electronic energy + Delta-G solvation = -26352.914711 eV Core-core repulsion = 22399.865126 eV Total energy + Delta-G solvation = -3953.049585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13673 -39.71935 -38.56187 -37.95708 -35.08602 -34.38290 -33.05243 -31.66192 -31.14338 -30.55237 -27.79048 -27.57852 -25.96090 -24.16578 -23.67399 -23.21360 -21.89238 -20.92368 -19.81363 -18.84966 -17.60942 -17.08682 -16.70027 -16.39249 -16.12947 -16.07401 -15.76881 -15.05577 -15.01507 -14.62236 -14.48437 -14.37934 -14.07114 -13.82911 -13.70275 -13.28083 -13.15080 -12.80583 -12.53090 -12.46555 -12.08654 -11.62708 -11.58688 -11.18060 -10.92310 -10.77947 -10.51702 -10.43956 -10.29926 -10.25917 -10.04665 -9.95308 -9.71799 -9.15525 -9.12513 -8.91621 -8.60145 -6.81688 -5.89790 -3.33608 0.38691 0.77457 2.56961 2.69282 3.07194 3.30036 3.38304 3.40242 3.51891 3.91629 4.13744 4.31795 4.38328 4.59364 4.68484 4.72711 4.91890 4.96106 5.05651 5.25133 5.27652 5.32523 5.39674 5.42728 5.45929 5.69225 5.72440 5.76505 5.89843 5.95422 6.07273 6.19900 6.30126 6.37190 6.42067 6.68885 6.82873 7.03900 7.34365 7.41313 7.46072 7.65824 7.77731 8.01248 8.27627 9.05743 9.68357 10.24826 11.18395 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.033325 B = 0.002180 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.006137 B =12839.360363 C =13067.440651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.317 3.683 4 C -0.133 4.133 5 C -0.048 4.048 6 C 0.555 3.445 7 O -0.529 6.529 8 N -0.708 5.708 9 C 0.129 3.871 10 C 0.064 3.936 11 H 0.060 0.940 12 C 0.122 3.878 13 N -0.594 5.594 14 C -0.256 4.256 15 H 0.070 0.930 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.906 3.094 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.390 6.390 25 C -0.180 4.180 26 C 0.138 3.862 27 N -0.528 5.528 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.404 0.596 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.255 0.745 38 H 0.029 0.971 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.144 0.856 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.307 -10.647 -1.354 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.138 3.862 4 C -0.154 4.154 5 C -0.059 4.059 6 C 0.341 3.659 7 O -0.406 6.406 8 N -0.359 5.359 9 C 0.006 3.994 10 C 0.004 3.996 11 H 0.078 0.922 12 C -0.006 4.006 13 N -0.317 5.317 14 C -0.385 4.385 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.546 5.546 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.309 6.309 25 C -0.201 4.201 26 C -0.017 4.017 27 N -0.253 5.253 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.173 0.827 32 H 0.240 0.760 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.162 0.838 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.532 -11.671 -1.146 24.519 hybrid contribution 0.950 1.523 -0.672 1.917 sum -20.582 -10.148 -1.818 23.020 Atomic orbital electron populations 1.22889 0.76967 1.03122 1.02530 1.86266 1.23081 1.24150 1.87735 1.19682 0.88999 0.84862 0.92674 1.21138 0.91888 0.99192 1.03196 1.20176 0.93941 0.93321 0.98468 1.18044 0.86688 0.83848 0.77363 1.90797 1.64113 1.36395 1.49333 1.45851 1.08612 1.07728 1.73742 1.21518 0.78590 0.95979 1.03336 1.22814 0.97986 0.91045 0.87731 0.92234 1.21437 0.90746 0.88376 1.00016 1.44072 1.55540 1.05068 1.27063 1.19237 1.17761 1.11349 0.90143 0.91251 1.25060 0.97562 1.01105 0.95964 1.70044 1.41085 1.30354 1.13146 0.86177 0.78601 0.80887 0.80825 1.20193 1.21471 1.21599 1.21451 0.87887 1.00065 0.89309 1.23333 0.99663 0.80592 1.00208 1.87789 1.81742 1.23546 1.37869 1.22219 0.94982 0.99165 1.03702 1.22380 0.92547 0.93636 0.93136 1.67193 1.41275 0.98952 1.17878 0.92184 0.92195 0.88474 0.82727 0.76019 0.90232 0.89698 0.95143 0.91686 0.93503 0.95324 0.88716 0.89982 0.94067 0.83808 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -3.13 10.47 -18.76 -0.20 -3.32 16 3 C 0.32 3.48 7.49 -17.16 -0.13 3.35 16 4 C -0.13 -1.52 9.61 -38.84 -0.37 -1.89 16 5 C -0.05 -0.54 5.91 -104.68 -0.62 -1.16 16 6 C 0.56 7.44 7.80 -12.19 -0.10 7.35 16 7 O -0.53 -8.85 16.44 5.35 0.09 -8.76 16 8 N -0.71 -8.75 5.46 -61.15 -0.33 -9.08 16 9 C 0.13 1.83 5.34 -4.04 -0.02 1.81 16 10 C 0.06 1.05 2.81 -26.58 -0.07 0.98 16 11 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 12 C 0.12 2.43 6.02 -3.53 -0.02 2.41 16 13 N -0.59 -14.38 3.05 -171.84 -0.52 -14.90 16 14 C -0.26 -6.78 9.65 -15.06 -0.15 -6.92 16 15 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 16 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 17 N -0.90 -25.49 11.14 55.49 0.62 -24.87 16 18 Si 0.91 21.03 29.59 -169.99 -5.03 16.00 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.14 3.19 5.45 -3.54 -0.02 3.17 16 23 C 0.04 0.72 6.98 37.31 0.26 0.98 16 24 O -0.39 -6.87 10.34 -35.23 -0.36 -7.24 16 25 C -0.18 -1.54 9.61 -39.03 -0.38 -1.91 16 26 C 0.14 1.12 11.17 -17.61 -0.20 0.93 16 27 N -0.53 -5.34 9.18 -13.38 -0.12 -5.46 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.16 1.78 7.74 -52.49 -0.41 1.38 16 32 H 0.40 4.17 6.61 -40.82 -0.27 3.90 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 37 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 2.40 6.14 -51.93 -0.32 2.08 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.14 0.90 6.53 -52.49 -0.34 0.56 16 43 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -32.39 360.73 -7.22 -39.61 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.95 Total: 2.23 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.85 Total: 10.37 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.36 Total: -54.32 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.47 Total: -19.32 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.39 -7.22 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035424688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.594 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds