Wall clock time and date at job start Tue Mar 31 2020 13:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35686 * 116.99764 * 2 1 4 4 C 1.38898 * 119.62051 * 180.25703 * 3 2 1 5 5 C 1.39574 * 118.94528 * 180.29244 * 4 3 2 6 6 C 1.48162 * 120.89162 * 179.72951 * 5 4 3 7 7 O 1.21514 * 120.00074 * 359.72151 * 6 5 4 8 8 N 1.34772 * 120.00023 * 179.72011 * 6 5 4 9 9 C 1.46502 * 120.00377 * 179.72465 * 8 6 5 10 10 C 1.52997 * 109.47431 * 180.27390 * 9 8 6 11 11 H 1.09000 * 109.51200 * 304.99690 * 10 9 8 12 12 C 1.53293 * 109.51141 * 184.89938 * 10 9 8 13 13 N 1.47152 * 108.38424 * 187.77492 * 12 10 9 14 14 C 1.36938 * 120.98336 * 230.55649 * 13 12 10 15 15 H 1.08000 * 120.00018 * 26.23543 * 14 13 12 16 16 C 1.38813 * 120.00295 * 206.23277 * 14 13 12 17 17 N 1.31623 * 119.99605 * 16.91957 * 16 14 13 18 18 Si 1.86790 * 120.00160 * 196.91510 * 16 14 13 19 19 H 1.48504 * 109.47579 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47121 * 120.00175 * 18 16 14 21 21 H 1.48500 * 109.47500 * 240.00288 * 18 16 14 22 22 C 1.47145 * 118.03664 * 50.53448 * 13 12 10 23 23 C 1.53292 * 108.38554 * 309.46654 * 22 13 12 24 24 O 1.42959 * 109.26868 * 52.27759 * 23 22 13 25 25 C 1.39966 * 118.21670 * 359.45536 * 5 4 3 26 26 C 1.37978 * 119.13369 * 0.27600 * 25 5 4 27 27 N 1.31913 * 120.97773 * 0.02562 * 26 25 5 28 28 H 1.09000 * 109.47266 * 300.00575 * 1 2 3 29 29 H 1.08997 * 109.46986 * 60.00442 * 1 2 3 30 30 H 1.09005 * 109.47476 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.52845 * 0.04041 * 4 3 2 32 32 H 0.97004 * 120.00142 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46623 * 300.27939 * 9 8 6 34 34 H 1.09004 * 109.46571 * 60.27190 * 9 8 6 35 35 H 1.08996 * 109.68215 * 307.49973 * 12 10 9 36 36 H 1.09004 * 109.68146 * 68.01351 * 12 10 9 37 37 H 0.97000 * 119.99843 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.68136 * 69.18634 * 22 13 12 39 39 H 1.08998 * 109.68213 * 189.70576 * 22 13 12 40 40 H 1.09005 * 109.51673 * 172.22547 * 23 22 13 41 41 H 1.09006 * 109.51585 * 292.37564 * 23 22 13 42 42 H 1.08000 * 120.43481 * 180.29899 * 25 5 4 43 43 H 1.07995 * 119.51272 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 -0.0054 5 6 4.0514 2.5236 0.0009 6 6 5.5283 2.6416 0.0015 7 8 6.2178 1.6409 0.0016 8 7 6.1071 3.8587 0.0019 9 6 7.5674 3.9754 0.0086 10 6 7.9609 5.4539 0.0146 11 1 7.4887 5.9597 -0.8277 12 6 9.4843 5.5788 -0.1019 13 7 9.8505 6.9905 0.0941 14 6 10.6654 7.6375 -0.7961 15 1 10.7118 7.3081 -1.8236 16 6 11.4318 8.7167 -0.3780 17 7 11.6415 8.9168 0.9059 18 14 12.1654 9.8850 -1.6374 19 1 11.7843 9.4436 -3.0032 20 1 11.6497 11.2571 -1.3992 21 1 13.6450 9.8835 -1.5111 22 6 9.3149 7.6865 1.2747 23 6 7.7998 7.4589 1.3241 24 8 7.5301 6.0577 1.2367 25 6 3.2394 3.6636 0.0007 26 6 1.8680 3.5116 0.0002 27 7 1.3178 2.3127 0.0004 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0231 0.3684 -0.0103 32 1 5.5567 4.6575 0.0015 33 1 7.9666 3.4895 0.8989 34 1 7.9743 3.4947 -0.8810 35 1 9.9623 4.9660 0.6623 36 1 9.8051 5.2495 -1.0902 37 1 12.1773 9.6707 1.1981 38 1 9.7758 7.2859 2.1776 39 1 9.5241 8.7535 1.1982 40 1 7.4034 7.8481 2.2620 41 1 7.3269 7.9728 0.4872 42 1 3.6805 4.6494 0.0006 43 1 1.2357 4.3871 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035424688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:22 Heat of formation + Delta-G solvation = -74.061530 kcal Electronic energy + Delta-G solvation = -26353.992790 eV Core-core repulsion = 22399.865126 eV Total energy + Delta-G solvation = -3954.127664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93180 -40.77160 -39.96585 -38.73553 -36.55915 -35.88507 -33.93826 -33.30934 -32.38174 -31.65293 -29.28026 -28.29662 -27.43027 -25.35055 -24.82473 -24.40151 -23.29166 -21.97620 -21.31818 -19.79011 -18.86547 -18.38806 -17.73470 -17.44156 -17.06831 -17.03117 -16.93109 -16.62010 -16.22789 -16.01432 -15.57232 -15.48296 -15.16994 -15.01545 -14.89983 -14.62337 -14.45064 -14.40771 -13.72323 -13.25830 -13.16764 -13.01275 -12.72726 -12.66264 -12.50201 -12.20910 -12.16370 -12.05213 -11.86948 -11.53759 -11.29049 -11.09719 -10.80428 -10.75970 -10.54408 -10.22784 -9.62121 -8.75381 -7.91314 -5.38479 -0.43786 0.06345 1.46319 1.48574 1.58876 1.72056 1.76055 2.20222 2.48191 2.73149 2.78154 3.23854 3.26264 3.44734 3.49741 3.86940 3.92742 3.95738 4.06130 4.10313 4.25697 4.43604 4.45297 4.49122 4.52959 4.62008 4.62510 4.70027 4.73430 4.76971 4.79167 4.91687 4.96722 5.06503 5.20571 5.25518 5.29302 5.56794 5.62596 6.14679 6.25907 6.33136 6.37464 6.69850 7.00762 7.06503 7.74670 8.27769 9.14812 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.033325 B = 0.002180 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.006137 B =12839.360363 C =13067.440651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.307 3.693 4 C -0.151 4.151 5 C -0.060 4.060 6 C 0.557 3.443 7 O -0.570 6.570 8 N -0.697 5.697 9 C 0.139 3.861 10 C 0.079 3.921 11 H 0.075 0.925 12 C 0.115 3.885 13 N -0.612 5.612 14 C -0.263 4.263 15 H 0.074 0.926 16 C -0.052 4.052 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.295 1.295 22 C 0.141 3.859 23 C 0.055 3.945 24 O -0.389 6.389 25 C -0.168 4.168 26 C 0.143 3.857 27 N -0.534 5.534 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.251 0.749 38 H -0.003 1.003 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.172 0.828 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.733 -9.856 -2.378 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.128 3.872 4 C -0.172 4.172 5 C -0.070 4.070 6 C 0.344 3.656 7 O -0.450 6.450 8 N -0.348 5.348 9 C 0.015 3.985 10 C 0.020 3.980 11 H 0.093 0.907 12 C -0.011 4.011 13 N -0.337 5.337 14 C -0.393 4.393 15 H 0.091 0.909 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.799 3.201 19 H -0.189 1.189 20 H -0.214 1.214 21 H -0.222 1.222 22 C 0.015 3.985 23 C -0.022 4.022 24 O -0.308 6.308 25 C -0.188 4.188 26 C -0.012 4.012 27 N -0.259 5.259 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.255 0.745 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.190 0.810 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -24.004 -10.893 -2.182 26.450 hybrid contribution 1.679 1.234 -0.338 2.111 sum -22.325 -9.659 -2.520 24.455 Atomic orbital electron populations 1.23112 0.75311 1.04810 1.02603 1.86244 1.24801 1.24175 1.87689 1.19730 0.88878 0.85448 0.93103 1.21104 0.92382 0.99128 1.04626 1.20030 0.92645 0.94286 1.00080 1.18348 0.87573 0.83335 0.76320 1.90778 1.65226 1.37714 1.51244 1.45664 1.07845 1.08106 1.73222 1.21292 0.79816 0.94196 1.03219 1.22643 0.95174 0.92365 0.87842 0.90711 1.21609 0.93432 0.86051 1.00029 1.44350 1.55640 1.06806 1.26890 1.19589 1.17525 1.11417 0.90792 0.90850 1.25833 0.98528 1.02774 0.97593 1.70199 1.42248 1.30844 1.14940 0.85157 0.77153 0.78665 0.79143 1.18864 1.21432 1.22247 1.21335 0.91261 0.98122 0.87762 1.23155 0.95711 0.81120 1.02261 1.87807 1.81233 1.23233 1.38552 1.22516 0.95017 0.99324 1.01973 1.23073 0.92903 0.94050 0.91169 1.67290 1.41374 0.99369 1.17842 0.92090 0.92027 0.86101 0.84033 0.74486 0.91574 0.88843 0.96504 0.90838 0.93973 0.98477 0.91432 0.87299 0.92705 0.81033 0.77714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 113.37 1.18 1.62 16 2 O -0.32 -6.46 10.47 -90.05 -0.94 -7.40 16 3 C 0.31 6.50 7.49 84.80 0.63 7.14 16 4 C -0.15 -3.44 9.61 22.75 0.22 -3.22 16 5 C -0.06 -1.25 5.91 -19.90 -0.12 -1.37 16 6 C 0.56 14.37 7.80 86.88 0.68 15.05 16 7 O -0.57 -19.18 16.44 -3.76 -0.06 -19.24 16 8 N -0.70 -15.66 5.46 -465.67 -2.54 -18.20 16 9 C 0.14 3.71 5.34 86.38 0.46 4.17 16 10 C 0.08 2.43 2.81 30.69 0.09 2.52 16 11 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 12 C 0.12 4.54 6.02 86.35 0.52 5.06 16 13 N -0.61 -29.66 3.05 -697.57 -2.13 -31.79 16 14 C -0.26 -13.94 9.65 84.03 0.81 -13.13 16 15 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 16 C -0.05 -2.81 4.94 84.86 0.42 -2.39 16 17 N -0.94 -54.12 11.14 21.65 0.24 -53.88 16 18 Si 0.97 43.36 29.59 68.60 2.03 45.39 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 22 C 0.14 6.53 5.45 86.35 0.47 7.01 16 23 C 0.06 1.89 6.98 72.08 0.50 2.39 16 24 O -0.39 -12.78 10.34 -148.98 -1.54 -14.32 16 25 C -0.17 -2.33 9.61 22.63 0.22 -2.11 16 26 C 0.14 1.83 11.17 84.62 0.94 2.77 16 27 N -0.53 -9.65 9.18 -309.14 -2.84 -12.48 16 28 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.14 3.48 7.74 -2.91 -0.02 3.46 16 32 H 0.42 7.13 6.61 -92.71 -0.61 6.51 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.38 8.14 -2.38 -0.02 2.37 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 37 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.07 3.49 6.14 -2.39 -0.01 3.48 16 40 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 41 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 42 H 0.17 1.35 6.53 -2.91 -0.02 1.33 16 43 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -71.68 360.73 -0.34 -72.02 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.42 Total: 14.39 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 7.02 Total: 25.50 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -7.27 Total: -116.35 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -2.54 Total: -40.96 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -71.68 -0.34 -72.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035424688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.040 kcal (2) G-P(sol) polarization free energy of solvation -71.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds