Wall clock time and date at job start Tue Mar 31 2020 13:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35681 * 116.99987 * 2 1 4 4 C 1.38903 * 119.61866 * 179.97438 * 3 2 1 5 5 C 1.39579 * 118.94156 * 179.97438 * 4 3 2 6 6 C 1.48156 * 120.89037 * 180.02562 * 5 4 3 7 7 O 1.21521 * 119.99986 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00242 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00194 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46847 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.50946 * 60.10345 * 10 9 8 12 12 C 1.53717 * 109.48148 * 180.36236 * 10 9 8 13 13 N 1.47154 * 108.16009 * 172.39943 * 12 10 9 14 14 C 1.36931 * 120.97887 * 129.43492 * 13 12 10 15 15 H 1.08005 * 120.00440 * 333.49504 * 14 13 12 16 16 C 1.38812 * 119.99878 * 153.49544 * 14 13 12 17 17 N 1.31622 * 120.00058 * 343.08256 * 16 14 13 18 18 Si 1.86803 * 119.99905 * 162.80886 * 16 14 13 19 19 H 1.48497 * 109.46927 * 90.00263 * 18 16 14 20 20 H 1.48506 * 109.46836 * 209.99902 * 18 16 14 21 21 H 1.48490 * 109.47352 * 329.99799 * 18 16 14 22 22 C 1.47149 * 118.03579 * 309.15864 * 13 12 10 23 23 C 1.53296 * 108.38694 * 50.78628 * 22 13 12 24 24 O 1.42963 * 109.22250 * 307.69880 * 23 22 13 25 25 C 1.39966 * 118.21520 * 0.27462 * 5 4 3 26 26 C 1.37978 * 119.13629 * 359.45929 * 25 5 4 27 27 N 1.31906 * 120.97731 * 0.55433 * 26 25 5 28 28 H 1.08996 * 109.46749 * 299.99666 * 1 2 3 29 29 H 1.09000 * 109.46977 * 59.99499 * 1 2 3 30 30 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.53048 * 359.96180 * 4 3 2 32 32 H 0.97001 * 119.99690 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.46958 * 60.00489 * 9 8 6 34 34 H 1.08997 * 109.46760 * 300.00352 * 9 8 6 35 35 H 1.08999 * 109.83737 * 52.72102 * 12 10 9 36 36 H 1.09001 * 109.74797 * 292.02541 * 12 10 9 37 37 H 0.96999 * 120.00005 * 180.02562 * 17 16 14 38 38 H 1.08993 * 109.68413 * 170.50997 * 22 13 12 39 39 H 1.08997 * 109.68203 * 291.02940 * 22 13 12 40 40 H 1.09004 * 109.50741 * 67.61742 * 23 22 13 41 41 H 1.08993 * 109.51437 * 187.72356 * 23 22 13 42 42 H 1.08006 * 120.43010 * 179.73066 * 25 5 4 43 43 H 1.07995 * 119.50858 * 180.27433 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2724 0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5284 2.6414 0.0000 7 8 6.2179 1.6408 0.0009 8 7 6.1072 3.8585 -0.0011 9 6 7.5676 3.9752 -0.0006 10 6 7.9610 5.4538 -0.0013 11 1 7.5594 5.9378 0.8889 12 6 9.4933 5.5765 -0.0099 13 7 9.8387 6.9948 -0.1955 14 6 10.7246 7.6197 0.6410 15 1 10.8552 7.2641 1.6525 16 6 11.4548 8.7104 0.1891 17 7 11.5582 8.9437 -1.1021 18 14 12.2842 9.8513 1.4138 19 1 13.6582 9.3624 1.6937 20 1 12.3525 11.2217 0.8458 21 1 11.5013 9.8768 2.6753 22 6 9.2088 7.7200 -1.3102 23 6 7.6945 7.4914 -1.2415 24 8 7.4333 6.0878 -1.1690 25 6 3.2395 3.6635 0.0048 26 6 1.8681 3.5115 -0.0015 27 7 1.3179 2.3127 -0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0231 0.3682 0.0016 32 1 5.5568 4.6573 -0.0015 33 1 7.9710 3.4910 -0.8899 34 1 7.9702 3.4928 0.8901 35 1 9.9069 4.9878 -0.8287 36 1 9.8965 5.2215 0.9385 37 1 12.0687 9.7056 -1.4179 38 1 9.4235 8.7851 -1.2233 39 1 9.5948 7.3439 -2.2576 40 1 7.2920 7.9829 -0.3557 41 1 7.2232 7.9046 -2.1331 42 1 3.6807 4.6493 0.0089 43 1 1.2359 4.3870 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035424691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:26 Heat of formation + Delta-G solvation = -49.060095 kcal Electronic energy + Delta-G solvation = -26366.197140 eV Core-core repulsion = 22413.153619 eV Total energy + Delta-G solvation = -3953.043520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13100 -39.71163 -38.54946 -37.95119 -35.07736 -34.37224 -33.04579 -31.64948 -31.13937 -30.54117 -27.78910 -27.57889 -25.94997 -24.16508 -23.66842 -23.20506 -21.88184 -20.89981 -19.81893 -18.85168 -17.60440 -17.08235 -16.70154 -16.38832 -16.11498 -16.07467 -15.75379 -15.04971 -15.01154 -14.60755 -14.48502 -14.38245 -14.06861 -13.83071 -13.69610 -13.28482 -13.15757 -12.79534 -12.52525 -12.45641 -12.08196 -11.61786 -11.58305 -11.17576 -10.90197 -10.77341 -10.50691 -10.44752 -10.33765 -10.25351 -10.04042 -9.95225 -9.71663 -9.15842 -9.10945 -8.91072 -8.59341 -6.81167 -5.89640 -3.33391 0.39272 0.78004 2.57482 2.69898 3.07797 3.30690 3.37971 3.39732 3.52471 3.92080 4.13368 4.33138 4.38726 4.60087 4.69154 4.73537 4.92259 4.96389 5.06612 5.25424 5.27825 5.33005 5.39212 5.43089 5.46229 5.69561 5.72496 5.76591 5.90508 5.96053 6.07673 6.20570 6.30302 6.37355 6.42408 6.69057 6.83323 7.03905 7.35754 7.41889 7.46090 7.65537 7.77389 8.02301 8.27929 9.05914 9.68590 10.25207 11.18478 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034384 B = 0.002183 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.146992 B =12821.722459 C =13101.487474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.317 3.683 4 C -0.133 4.133 5 C -0.048 4.048 6 C 0.555 3.445 7 O -0.530 6.530 8 N -0.707 5.707 9 C 0.129 3.871 10 C 0.064 3.936 11 H 0.060 0.940 12 C 0.122 3.878 13 N -0.593 5.593 14 C -0.257 4.257 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.390 6.390 25 C -0.180 4.180 26 C 0.138 3.862 27 N -0.528 5.528 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.405 0.595 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.255 0.745 38 H 0.095 0.905 39 H 0.029 0.971 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.144 0.856 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.159 -10.638 1.905 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.138 3.862 4 C -0.154 4.154 5 C -0.059 4.059 6 C 0.340 3.660 7 O -0.407 6.407 8 N -0.358 5.358 9 C 0.006 3.994 10 C 0.004 3.996 11 H 0.078 0.922 12 C -0.006 4.006 13 N -0.317 5.317 14 C -0.386 4.386 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.204 1.204 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.310 6.310 25 C -0.201 4.201 26 C -0.017 4.017 27 N -0.253 5.253 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.173 0.827 32 H 0.241 0.759 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.162 0.838 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.409 -11.643 1.689 24.429 hybrid contribution 1.024 1.492 0.651 1.923 sum -20.384 -10.151 2.340 22.892 Atomic orbital electron populations 1.22888 0.76971 1.03117 1.02529 1.86265 1.23078 1.24157 1.87739 1.19682 0.88998 0.84861 0.92689 1.21138 0.91883 0.99189 1.03209 1.20176 0.93945 0.93317 0.98459 1.18048 0.86690 0.83858 0.77378 1.90798 1.64115 1.36401 1.49392 1.45821 1.08606 1.07738 1.73666 1.21530 0.78661 0.95937 1.03279 1.22911 0.97214 0.90698 0.88788 0.92190 1.21526 0.90748 0.88290 1.00008 1.44080 1.49529 1.04231 1.33882 1.19179 1.15757 1.11214 0.92431 0.91326 1.25063 0.97822 1.01057 0.95707 1.70030 1.43040 1.29733 1.11834 0.86256 0.79421 0.80282 0.80568 1.21263 1.21464 1.20432 1.21447 0.87201 0.99738 0.90307 1.23328 0.99749 0.80500 1.00194 1.87774 1.77609 1.22761 1.42833 1.22223 0.94979 0.99180 1.03670 1.22377 0.92550 0.93633 0.93143 1.67190 1.41277 0.98953 1.17882 0.92198 0.92183 0.88479 0.82734 0.75935 0.90295 0.89765 0.95122 0.91686 0.93450 0.88742 0.95337 0.94051 0.89983 0.83792 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -3.14 10.47 -18.75 -0.20 -3.33 16 3 C 0.32 3.49 7.49 -17.16 -0.13 3.36 16 4 C -0.13 -1.52 9.61 -38.84 -0.37 -1.90 16 5 C -0.05 -0.54 5.91 -104.68 -0.62 -1.16 16 6 C 0.55 7.47 7.80 -12.19 -0.10 7.38 16 7 O -0.53 -8.88 16.44 5.35 0.09 -8.79 16 8 N -0.71 -8.79 5.41 -61.15 -0.33 -9.12 16 9 C 0.13 1.83 5.37 -4.04 -0.02 1.81 16 10 C 0.06 1.04 2.88 -26.36 -0.08 0.97 16 11 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 12 C 0.12 2.43 6.05 -3.31 -0.02 2.41 16 13 N -0.59 -14.37 3.04 -171.57 -0.52 -14.90 16 14 C -0.26 -6.80 9.65 -15.06 -0.15 -6.95 16 15 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 16 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 17 N -0.90 -25.48 11.14 55.49 0.62 -24.86 16 18 Si 0.91 21.01 29.59 -169.99 -5.03 15.99 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.14 3.19 5.44 -3.53 -0.02 3.17 16 23 C 0.04 0.72 6.99 37.31 0.26 0.98 16 24 O -0.39 -6.83 10.13 -35.23 -0.36 -7.19 16 25 C -0.18 -1.55 9.61 -39.03 -0.38 -1.93 16 26 C 0.14 1.13 11.17 -17.62 -0.20 0.93 16 27 N -0.53 -5.36 9.18 -13.38 -0.12 -5.48 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.15 1.79 7.74 -52.49 -0.41 1.38 16 32 H 0.40 4.24 6.49 -40.82 -0.26 3.98 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.09 2.39 6.14 -51.93 -0.32 2.07 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.14 0.92 6.53 -52.48 -0.34 0.58 16 43 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -32.31 360.46 -7.21 -39.52 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.94 Total: 2.35 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.85 Total: 10.38 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.36 Total: -54.36 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.47 Total: -19.31 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.31 -7.21 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035424691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.545 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds