Wall clock time and date at job start Tue Mar 31 2020 13:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35681 * 116.99987 * 2 1 4 4 C 1.38903 * 119.61866 * 179.97438 * 3 2 1 5 5 C 1.39579 * 118.94156 * 179.97438 * 4 3 2 6 6 C 1.48156 * 120.89037 * 180.02562 * 5 4 3 7 7 O 1.21521 * 119.99986 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00242 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00194 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46847 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.50946 * 60.10345 * 10 9 8 12 12 C 1.53717 * 109.48148 * 180.36236 * 10 9 8 13 13 N 1.47154 * 108.16009 * 172.39943 * 12 10 9 14 14 C 1.36931 * 120.97887 * 129.43492 * 13 12 10 15 15 H 1.08005 * 120.00440 * 333.49504 * 14 13 12 16 16 C 1.38812 * 119.99878 * 153.49544 * 14 13 12 17 17 N 1.31622 * 120.00058 * 343.08256 * 16 14 13 18 18 Si 1.86803 * 119.99905 * 162.80886 * 16 14 13 19 19 H 1.48497 * 109.46927 * 90.00263 * 18 16 14 20 20 H 1.48506 * 109.46836 * 209.99902 * 18 16 14 21 21 H 1.48490 * 109.47352 * 329.99799 * 18 16 14 22 22 C 1.47149 * 118.03579 * 309.15864 * 13 12 10 23 23 C 1.53296 * 108.38694 * 50.78628 * 22 13 12 24 24 O 1.42963 * 109.22250 * 307.69880 * 23 22 13 25 25 C 1.39966 * 118.21520 * 0.27462 * 5 4 3 26 26 C 1.37978 * 119.13629 * 359.45929 * 25 5 4 27 27 N 1.31906 * 120.97731 * 0.55433 * 26 25 5 28 28 H 1.08996 * 109.46749 * 299.99666 * 1 2 3 29 29 H 1.09000 * 109.46977 * 59.99499 * 1 2 3 30 30 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.53048 * 359.96180 * 4 3 2 32 32 H 0.97001 * 119.99690 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.46958 * 60.00489 * 9 8 6 34 34 H 1.08997 * 109.46760 * 300.00352 * 9 8 6 35 35 H 1.08999 * 109.83737 * 52.72102 * 12 10 9 36 36 H 1.09001 * 109.74797 * 292.02541 * 12 10 9 37 37 H 0.96999 * 120.00005 * 180.02562 * 17 16 14 38 38 H 1.08993 * 109.68413 * 170.50997 * 22 13 12 39 39 H 1.08997 * 109.68203 * 291.02940 * 22 13 12 40 40 H 1.09004 * 109.50741 * 67.61742 * 23 22 13 41 41 H 1.08993 * 109.51437 * 187.72356 * 23 22 13 42 42 H 1.08006 * 120.43010 * 179.73066 * 25 5 4 43 43 H 1.07995 * 119.50858 * 180.27433 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2724 0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5284 2.6414 0.0000 7 8 6.2179 1.6408 0.0009 8 7 6.1072 3.8585 -0.0011 9 6 7.5676 3.9752 -0.0006 10 6 7.9610 5.4538 -0.0013 11 1 7.5594 5.9378 0.8889 12 6 9.4933 5.5765 -0.0099 13 7 9.8387 6.9948 -0.1955 14 6 10.7246 7.6197 0.6410 15 1 10.8552 7.2641 1.6525 16 6 11.4548 8.7104 0.1891 17 7 11.5582 8.9437 -1.1021 18 14 12.2842 9.8513 1.4138 19 1 13.6582 9.3624 1.6937 20 1 12.3525 11.2217 0.8458 21 1 11.5013 9.8768 2.6753 22 6 9.2088 7.7200 -1.3102 23 6 7.6945 7.4914 -1.2415 24 8 7.4333 6.0878 -1.1690 25 6 3.2395 3.6635 0.0048 26 6 1.8681 3.5115 -0.0015 27 7 1.3179 2.3127 -0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0231 0.3682 0.0016 32 1 5.5568 4.6573 -0.0015 33 1 7.9710 3.4910 -0.8899 34 1 7.9702 3.4928 0.8901 35 1 9.9069 4.9878 -0.8287 36 1 9.8965 5.2215 0.9385 37 1 12.0687 9.7056 -1.4179 38 1 9.4235 8.7851 -1.2233 39 1 9.5948 7.3439 -2.2576 40 1 7.2920 7.9829 -0.3557 41 1 7.2232 7.9046 -2.1331 42 1 3.6807 4.6493 0.0089 43 1 1.2359 4.3870 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035424691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:25 Heat of formation + Delta-G solvation = -73.773444 kcal Electronic energy + Delta-G solvation = -26367.268791 eV Core-core repulsion = 22413.153619 eV Total energy + Delta-G solvation = -3954.115172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92969 -40.76603 -39.95184 -38.73416 -36.55890 -35.86623 -33.93353 -33.30356 -32.37089 -31.64717 -29.27950 -28.29550 -27.42343 -25.35257 -24.81218 -24.40021 -23.28157 -21.94994 -21.33343 -19.79178 -18.86160 -18.38699 -17.74400 -17.41501 -17.06842 -17.02680 -16.92473 -16.61717 -16.23192 -16.00934 -15.56784 -15.48492 -15.16876 -15.01437 -14.89698 -14.63357 -14.44009 -14.40406 -13.72032 -13.25311 -13.16575 -12.99964 -12.70221 -12.65298 -12.49513 -12.20856 -12.18740 -12.07594 -11.86956 -11.54040 -11.28555 -11.09564 -10.79861 -10.75849 -10.53414 -10.21813 -9.61989 -8.74767 -7.91102 -5.38221 -0.43641 0.06448 1.47057 1.48550 1.58162 1.72375 1.76169 2.20220 2.48552 2.73319 2.78363 3.24159 3.26430 3.45130 3.50641 3.87084 3.93027 3.96083 4.05488 4.10601 4.25240 4.43717 4.45364 4.49229 4.52927 4.62577 4.63099 4.70639 4.73995 4.77266 4.79537 4.92117 4.96946 5.06782 5.20505 5.25738 5.29568 5.56901 5.62661 6.14775 6.25798 6.33418 6.38065 6.69939 7.01232 7.06733 7.74980 8.28164 9.14767 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034384 B = 0.002183 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.146992 B =12821.722459 C =13101.487474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.307 3.693 4 C -0.151 4.151 5 C -0.060 4.060 6 C 0.557 3.443 7 O -0.570 6.570 8 N -0.696 5.696 9 C 0.139 3.861 10 C 0.079 3.921 11 H 0.075 0.925 12 C 0.115 3.885 13 N -0.612 5.612 14 C -0.265 4.265 15 H 0.073 0.927 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.267 1.267 22 C 0.141 3.859 23 C 0.055 3.945 24 O -0.388 6.388 25 C -0.168 4.168 26 C 0.144 3.856 27 N -0.534 5.534 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.417 0.583 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.251 0.749 38 H 0.067 0.933 39 H -0.003 1.003 40 H 0.054 0.946 41 H 0.110 0.890 42 H 0.172 0.828 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.508 -9.876 2.993 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.128 3.872 4 C -0.172 4.172 5 C -0.070 4.070 6 C 0.344 3.656 7 O -0.450 6.450 8 N -0.348 5.348 9 C 0.015 3.985 10 C 0.020 3.980 11 H 0.093 0.907 12 C -0.011 4.011 13 N -0.337 5.337 14 C -0.395 4.395 15 H 0.091 0.909 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.798 3.202 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.192 1.192 22 C 0.015 3.985 23 C -0.022 4.022 24 O -0.308 6.308 25 C -0.188 4.188 26 C -0.012 4.012 27 N -0.259 5.259 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.255 0.745 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.189 0.811 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -23.801 -10.895 2.789 26.324 hybrid contribution 1.728 1.211 0.294 2.130 sum -22.073 -9.685 3.083 24.301 Atomic orbital electron populations 1.23113 0.75309 1.04809 1.02604 1.86243 1.24802 1.24174 1.87689 1.19730 0.88876 0.85448 0.93106 1.21105 0.92380 0.99119 1.04633 1.20032 0.92655 0.94283 1.00071 1.18351 0.87577 0.83342 0.76340 1.90779 1.65224 1.37705 1.51291 1.45642 1.07864 1.08100 1.73157 1.21312 0.79846 0.94163 1.03212 1.22733 0.94308 0.91986 0.88997 0.90749 1.21698 0.93581 0.85982 0.99864 1.44363 1.49598 1.05992 1.33721 1.19543 1.15649 1.11287 0.93003 0.90896 1.25838 0.99000 1.02640 0.97210 1.70189 1.44268 1.30155 1.13570 0.85233 0.78252 0.77910 0.78762 1.21392 1.21840 1.19186 1.21336 0.90647 0.97845 0.88649 1.23151 0.95830 0.81041 1.02186 1.87792 1.77104 1.22438 1.43429 1.22516 0.95024 0.99323 1.01970 1.23069 0.92894 0.94053 0.91172 1.67288 1.41371 0.99365 1.17846 0.92023 0.92093 0.86100 0.84030 0.74460 0.91624 0.88826 0.96496 0.90875 0.93964 0.91456 0.98490 0.92731 0.87229 0.81064 0.77717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 113.37 1.18 1.63 16 2 O -0.32 -6.47 10.47 -89.99 -0.94 -7.42 16 3 C 0.31 6.52 7.49 84.80 0.63 7.16 16 4 C -0.15 -3.45 9.61 22.75 0.22 -3.24 16 5 C -0.06 -1.26 5.91 -19.90 -0.12 -1.38 16 6 C 0.56 14.43 7.80 86.88 0.68 15.11 16 7 O -0.57 -19.22 16.44 -3.78 -0.06 -19.29 16 8 N -0.70 -15.77 5.41 -465.67 -2.52 -18.29 16 9 C 0.14 3.71 5.37 86.38 0.46 4.18 16 10 C 0.08 2.43 2.88 30.84 0.09 2.52 16 11 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 12 C 0.12 4.54 6.05 86.50 0.52 5.07 16 13 N -0.61 -29.67 3.04 -696.73 -2.12 -31.79 16 14 C -0.27 -14.04 9.65 84.03 0.81 -13.22 16 15 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 16 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 17 N -0.94 -54.06 11.14 21.65 0.24 -53.82 16 18 Si 0.97 43.35 29.59 68.60 2.03 45.38 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 C 0.14 6.52 5.44 86.35 0.47 6.99 16 23 C 0.06 1.89 6.99 72.08 0.50 2.39 16 24 O -0.39 -12.65 10.13 -148.98 -1.51 -14.16 16 25 C -0.17 -2.36 9.61 22.63 0.22 -2.14 16 26 C 0.14 1.85 11.17 84.62 0.94 2.79 16 27 N -0.53 -9.69 9.18 -309.15 -2.84 -12.53 16 28 H 0.06 0.73 8.10 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 3.49 7.74 -2.91 -0.02 3.47 16 32 H 0.42 7.29 6.49 -92.71 -0.60 6.69 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 37 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.07 3.47 6.14 -2.39 -0.01 3.46 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.17 1.40 6.53 -2.91 -0.02 1.38 16 43 H 0.21 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -71.50 360.46 -0.25 -71.76 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.43 Total: 14.67 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 7.03 Total: 25.49 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -7.24 Total: -116.43 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -2.51 Total: -40.86 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -71.50 -0.25 -71.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035424691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.018 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds