Wall clock time and date at job start Tue Mar 31 2020 13:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35501 * 116.99446 * 2 1 4 4 C 1.39173 * 119.52109 * 179.72572 * 3 2 1 5 5 C 1.37951 * 119.26218 * 179.74871 * 4 3 2 6 6 C 1.40285 * 118.35564 * 0.51020 * 5 4 3 7 7 C 1.47615 * 120.49793 * 179.76982 * 6 5 4 8 8 O 1.21583 * 119.99843 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99810 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47243 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.50885 * 59.99812 * 11 10 9 13 13 C 1.53288 * 109.51433 * 180.09754 * 11 10 9 14 14 N 1.47151 * 108.38376 * 172.22674 * 13 11 10 15 15 C 1.36939 * 120.98149 * 129.48886 * 14 13 11 16 16 H 1.08003 * 119.99872 * 206.22449 * 15 14 13 17 17 C 1.38811 * 120.00141 * 26.22499 * 15 14 13 18 18 N 1.31626 * 120.00015 * 16.90965 * 17 15 14 19 19 Si 1.86799 * 120.00205 * 196.90726 * 17 15 14 20 20 H 1.48508 * 109.46917 * 59.99849 * 19 17 15 21 21 H 1.48501 * 109.47309 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47240 * 300.00219 * 19 17 15 23 23 C 1.47148 * 118.03781 * 309.46234 * 14 13 11 24 24 C 1.53296 * 108.38342 * 50.53681 * 23 14 13 25 25 O 1.42955 * 109.51061 * 299.89854 * 11 10 9 26 26 C 1.39522 * 119.00466 * 359.75847 * 6 5 4 27 27 N 1.31671 * 120.62773 * 359.96996 * 26 6 5 28 28 H 1.08998 * 109.47293 * 299.99852 * 1 2 3 29 29 H 1.08999 * 109.47192 * 60.00598 * 1 2 3 30 30 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.37245 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.82330 * 180.24889 * 5 4 3 33 33 H 0.96997 * 120.00507 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.46909 * 299.99686 * 10 9 7 35 35 H 1.09002 * 109.47457 * 59.99507 * 10 9 7 36 36 H 1.09000 * 109.68195 * 291.95157 * 13 11 10 37 37 H 1.09002 * 109.68395 * 52.46142 * 13 11 10 38 38 H 0.97000 * 119.99820 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.68266 * 170.26012 * 23 14 13 40 40 H 1.08998 * 109.68292 * 290.77706 * 23 14 13 41 41 H 1.08998 * 109.51471 * 67.62086 * 24 23 14 42 42 H 1.08996 * 109.51811 * 187.77664 * 24 23 14 43 43 H 1.07997 * 119.68728 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4345 1.2687 0.0058 5 6 4.0551 2.5008 0.0005 6 6 3.2523 3.6512 0.0004 7 6 3.8667 4.9934 -0.0001 8 8 5.0771 5.1079 0.0001 9 7 3.0858 6.0919 -0.0007 10 6 3.6956 7.4241 -0.0018 11 6 2.5962 8.4882 -0.0030 12 1 1.9771 8.3730 0.8867 13 6 3.2332 9.8825 -0.0065 14 7 2.1674 10.8791 -0.1965 15 6 2.0528 11.9569 0.6405 16 1 1.0924 12.4297 0.7838 17 6 3.1711 12.4419 1.3047 18 7 4.3763 12.1044 0.8973 19 14 2.9655 13.5734 2.7767 20 1 2.1949 12.8731 3.8355 21 1 4.3024 13.9479 3.3037 22 1 2.2357 14.7982 2.3614 23 6 1.2287 10.6838 -1.3127 24 6 0.6893 9.2504 -1.2455 25 8 1.7863 8.3366 -1.1712 26 6 1.8645 3.5077 0.0004 27 7 1.3137 2.3117 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0211 0.3619 0.0099 32 1 5.1323 2.5777 0.0008 33 1 2.1201 6.0006 -0.0013 34 1 4.3141 7.5412 0.8881 35 1 4.3139 7.5400 -0.8919 36 1 3.7356 10.0590 0.9446 37 1 3.9538 9.9549 -0.8211 38 1 5.1578 12.4430 1.3617 39 1 0.4037 11.3908 -1.2266 40 1 1.7467 10.8377 -2.2592 41 1 0.0625 9.1383 -0.3609 42 1 0.1007 9.0406 -2.1386 43 1 1.2360 4.3859 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035439749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:32 Heat of formation + Delta-G solvation = -50.904518 kcal Electronic energy + Delta-G solvation = -26567.239419 eV Core-core repulsion = 22614.115919 eV Total energy + Delta-G solvation = -3953.123501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10660 -39.61257 -38.53589 -37.83875 -34.92810 -34.37036 -32.84403 -31.86980 -31.28842 -30.48622 -27.89286 -27.29473 -25.66876 -24.30300 -23.47109 -23.23657 -21.72646 -20.77632 -19.69842 -18.85364 -17.85000 -17.49966 -16.91997 -16.41956 -16.04321 -15.63282 -15.19197 -15.10534 -14.84478 -14.60243 -14.42486 -14.27911 -13.92191 -13.64094 -13.49772 -13.27442 -13.09224 -12.88515 -12.82401 -12.27689 -12.23788 -11.58137 -11.52714 -11.13292 -10.86253 -10.77314 -10.47360 -10.33741 -10.32012 -10.29855 -10.04440 -9.78783 -9.68839 -9.13721 -9.04921 -8.78964 -8.58085 -6.79768 -5.87957 -3.31849 0.45339 0.86591 2.66763 2.77446 3.17252 3.33256 3.39509 3.40025 3.60875 3.83890 4.20630 4.40857 4.48606 4.56588 4.72597 4.81164 4.95289 4.95803 5.13650 5.25059 5.25656 5.32102 5.45538 5.52192 5.57781 5.78830 5.82701 5.89904 5.97248 5.98259 6.08070 6.19290 6.31810 6.45443 6.58490 6.74598 6.77721 7.02667 7.37671 7.43757 7.55074 7.67116 7.79121 8.22665 8.29609 9.07175 9.70103 10.26931 11.20166 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.002496 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.127541 B =11217.411571 C =11713.114586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.337 3.663 4 C -0.197 4.197 5 C 0.016 3.984 6 C -0.220 4.220 7 C 0.563 3.437 8 O -0.540 6.540 9 N -0.713 5.713 10 C 0.133 3.867 11 C 0.054 3.946 12 H 0.057 0.943 13 C 0.152 3.848 14 N -0.594 5.594 15 C -0.258 4.258 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.906 3.094 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.282 1.282 23 C 0.109 3.891 24 C 0.050 3.950 25 O -0.391 6.391 26 C 0.179 3.821 27 N -0.543 5.543 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.400 0.600 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.257 0.743 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -21.509 -1.850 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.159 3.841 4 C -0.218 4.218 5 C -0.009 4.009 6 C -0.226 4.226 7 C 0.349 3.651 8 O -0.418 6.418 9 N -0.364 5.364 10 C 0.009 3.991 11 C -0.005 4.005 12 H 0.075 0.925 13 C 0.026 3.974 14 N -0.318 5.318 15 C -0.387 4.387 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.208 1.208 23 C -0.018 4.018 24 C -0.028 4.028 25 O -0.310 6.310 26 C 0.022 3.978 27 N -0.267 5.267 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.236 0.764 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.586 -21.811 -1.918 22.864 hybrid contribution -0.035 1.044 0.884 1.369 sum -6.621 -20.766 -1.034 21.821 Atomic orbital electron populations 1.22928 0.76780 1.03176 1.02836 1.86216 1.23337 1.24499 1.87069 1.20104 0.89535 0.84747 0.89731 1.21054 0.91797 0.99649 1.09265 1.21553 1.01419 0.89635 0.88334 1.20887 0.94988 0.95048 1.11655 1.17860 0.86681 0.83700 0.76840 1.90793 1.13714 1.86977 1.50352 1.45883 1.10232 1.06028 1.74294 1.21477 0.95301 0.78943 1.03353 1.23162 0.92059 0.97491 0.87832 0.92541 1.21306 0.90012 0.83179 1.02928 1.44039 1.32795 1.24818 1.30145 1.19141 0.93308 1.07043 1.19224 0.91380 1.25064 0.95202 0.98686 1.00618 1.70008 0.96946 1.47569 1.40035 0.86326 0.76841 0.80541 0.82796 1.20957 1.21488 1.20801 1.21600 0.94229 0.94148 0.91785 1.23011 0.88149 0.91306 1.00323 1.87772 1.42142 1.57494 1.43591 1.22665 0.91684 0.93939 0.89549 1.67321 1.40520 0.98619 1.20192 0.91997 0.91974 0.88449 0.83354 0.82665 0.76439 0.89697 0.90449 0.88542 0.94998 0.93303 0.91966 0.95535 0.93830 0.89976 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.37 101.05 1.05 1.30 16 2 O -0.31 -2.89 10.46 -18.20 -0.19 -3.08 16 3 C 0.34 3.53 7.49 -16.96 -0.13 3.40 16 4 C -0.20 -1.83 10.02 -39.34 -0.39 -2.23 16 5 C 0.02 0.17 9.70 -38.92 -0.38 -0.21 16 6 C -0.22 -2.57 5.89 -104.82 -0.62 -3.18 16 7 C 0.56 8.10 7.77 -12.43 -0.10 8.00 16 8 O -0.54 -9.59 16.41 5.29 0.09 -9.50 16 9 N -0.71 -9.80 5.40 -61.32 -0.33 -10.13 16 10 C 0.13 2.17 5.37 -4.04 -0.02 2.15 16 11 C 0.05 0.98 2.86 -26.58 -0.08 0.91 16 12 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 13 C 0.15 3.51 4.73 -3.54 -0.02 3.49 16 14 N -0.59 -14.52 3.05 -171.84 -0.52 -15.04 16 15 C -0.26 -6.88 9.65 -15.06 -0.15 -7.02 16 16 H 0.07 1.77 7.88 -52.48 -0.41 1.35 16 17 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 18 N -0.90 -25.56 11.14 55.49 0.62 -24.94 16 19 Si 0.91 21.16 29.59 -169.99 -5.03 16.13 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C 0.11 2.21 6.74 -3.54 -0.02 2.18 16 24 C 0.05 0.84 6.98 37.31 0.26 1.10 16 25 O -0.39 -6.94 10.14 -35.23 -0.36 -7.30 16 26 C 0.18 1.87 10.71 -17.14 -0.18 1.68 16 27 N -0.54 -5.91 9.18 -12.96 -0.12 -6.03 16 28 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.16 1.49 7.73 -52.49 -0.41 1.08 16 33 H 0.40 4.62 6.40 -40.82 -0.26 4.36 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.10 2.44 6.14 -51.93 -0.32 2.13 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.16 1.35 6.41 -52.49 -0.34 1.02 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -32.29 360.16 -7.21 -39.49 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.93 Total: 3.40 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.86 Total: 11.57 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.36 Total: -56.14 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.46 Total: -19.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.29 -7.21 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035439749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.412 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds