Wall clock time and date at job start Tue Mar 31 2020 13:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35501 * 116.99446 * 2 1 4 4 C 1.39173 * 119.52109 * 179.72572 * 3 2 1 5 5 C 1.37951 * 119.26218 * 179.74871 * 4 3 2 6 6 C 1.40285 * 118.35564 * 0.51020 * 5 4 3 7 7 C 1.47615 * 120.49793 * 179.76982 * 6 5 4 8 8 O 1.21583 * 119.99843 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99810 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47243 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.50885 * 59.99812 * 11 10 9 13 13 C 1.53288 * 109.51433 * 180.09754 * 11 10 9 14 14 N 1.47151 * 108.38376 * 172.22674 * 13 11 10 15 15 C 1.36939 * 120.98149 * 129.48886 * 14 13 11 16 16 H 1.08003 * 119.99872 * 206.22449 * 15 14 13 17 17 C 1.38811 * 120.00141 * 26.22499 * 15 14 13 18 18 N 1.31626 * 120.00015 * 16.90965 * 17 15 14 19 19 Si 1.86799 * 120.00205 * 196.90726 * 17 15 14 20 20 H 1.48508 * 109.46917 * 59.99849 * 19 17 15 21 21 H 1.48501 * 109.47309 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47240 * 300.00219 * 19 17 15 23 23 C 1.47148 * 118.03781 * 309.46234 * 14 13 11 24 24 C 1.53296 * 108.38342 * 50.53681 * 23 14 13 25 25 O 1.42955 * 109.51061 * 299.89854 * 11 10 9 26 26 C 1.39522 * 119.00466 * 359.75847 * 6 5 4 27 27 N 1.31671 * 120.62773 * 359.96996 * 26 6 5 28 28 H 1.08998 * 109.47293 * 299.99852 * 1 2 3 29 29 H 1.08999 * 109.47192 * 60.00598 * 1 2 3 30 30 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.37245 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.82330 * 180.24889 * 5 4 3 33 33 H 0.96997 * 120.00507 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.46909 * 299.99686 * 10 9 7 35 35 H 1.09002 * 109.47457 * 59.99507 * 10 9 7 36 36 H 1.09000 * 109.68195 * 291.95157 * 13 11 10 37 37 H 1.09002 * 109.68395 * 52.46142 * 13 11 10 38 38 H 0.97000 * 119.99820 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.68266 * 170.26012 * 23 14 13 40 40 H 1.08998 * 109.68292 * 290.77706 * 23 14 13 41 41 H 1.08998 * 109.51471 * 67.62086 * 24 23 14 42 42 H 1.08996 * 109.51811 * 187.77664 * 24 23 14 43 43 H 1.07997 * 119.68728 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4345 1.2687 0.0058 5 6 4.0551 2.5008 0.0005 6 6 3.2523 3.6512 0.0004 7 6 3.8667 4.9934 -0.0001 8 8 5.0771 5.1079 0.0001 9 7 3.0858 6.0919 -0.0007 10 6 3.6956 7.4241 -0.0018 11 6 2.5962 8.4882 -0.0030 12 1 1.9771 8.3730 0.8867 13 6 3.2332 9.8825 -0.0065 14 7 2.1674 10.8791 -0.1965 15 6 2.0528 11.9569 0.6405 16 1 1.0924 12.4297 0.7838 17 6 3.1711 12.4419 1.3047 18 7 4.3763 12.1044 0.8973 19 14 2.9655 13.5734 2.7767 20 1 2.1949 12.8731 3.8355 21 1 4.3024 13.9479 3.3037 22 1 2.2357 14.7982 2.3614 23 6 1.2287 10.6838 -1.3127 24 6 0.6893 9.2504 -1.2455 25 8 1.7863 8.3366 -1.1712 26 6 1.8645 3.5077 0.0004 27 7 1.3137 2.3117 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0211 0.3619 0.0099 32 1 5.1323 2.5777 0.0008 33 1 2.1201 6.0006 -0.0013 34 1 4.3141 7.5412 0.8881 35 1 4.3139 7.5400 -0.8919 36 1 3.7356 10.0590 0.9446 37 1 3.9538 9.9549 -0.8211 38 1 5.1578 12.4430 1.3617 39 1 0.4037 11.3908 -1.2266 40 1 1.7467 10.8377 -2.2592 41 1 0.0625 9.1383 -0.3609 42 1 0.1007 9.0406 -2.1386 43 1 1.2360 4.3859 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035439749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:32 Heat of formation + Delta-G solvation = -75.483333 kcal Electronic energy + Delta-G solvation = -26568.305237 eV Core-core repulsion = 22614.115919 eV Total energy + Delta-G solvation = -3954.189318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93753 -40.74064 -39.95455 -38.69138 -36.48579 -35.90463 -33.65000 -33.28863 -32.95075 -31.64512 -29.12243 -28.39691 -27.18042 -25.29943 -24.99193 -24.25948 -23.17610 -21.94221 -21.30079 -19.61374 -19.01555 -18.77337 -18.24011 -17.49399 -17.12367 -17.06286 -16.66716 -16.13686 -16.11474 -15.93157 -15.57066 -15.44491 -15.18658 -14.99775 -14.66365 -14.59926 -14.39484 -14.13630 -13.87419 -13.69835 -13.17343 -12.98676 -12.77198 -12.64213 -12.52688 -12.20960 -12.19107 -12.11411 -11.87176 -11.42436 -11.25235 -11.09635 -10.81395 -10.70753 -10.54049 -10.23488 -9.64536 -8.75130 -7.91044 -5.38441 -0.39856 0.09988 1.47039 1.49234 1.56270 1.75597 1.97139 2.05159 2.48328 2.72415 2.79751 3.10894 3.23602 3.49779 3.61396 3.76633 3.92797 4.02327 4.07330 4.09135 4.28102 4.44710 4.44949 4.46539 4.52352 4.57263 4.61556 4.67119 4.70007 4.80392 4.84028 4.97872 5.03871 5.08313 5.21616 5.24027 5.31398 5.53941 5.60491 6.06951 6.26725 6.33181 6.45251 6.60025 7.05862 7.11702 7.74974 8.28342 9.14635 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021286 B = 0.002496 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.127541 B =11217.411571 C =11713.114586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.331 3.669 4 C -0.192 4.192 5 C 0.014 3.986 6 C -0.234 4.234 7 C 0.566 3.434 8 O -0.580 6.580 9 N -0.703 5.703 10 C 0.144 3.856 11 C 0.076 3.924 12 H 0.067 0.933 13 C 0.158 3.842 14 N -0.614 5.614 15 C -0.266 4.266 16 H 0.074 0.926 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.275 1.275 21 H -0.296 1.296 22 H -0.275 1.275 23 C 0.101 3.899 24 C 0.057 3.943 25 O -0.389 6.389 26 C 0.186 3.814 27 N -0.552 5.552 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.414 0.586 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.000 1.000 38 H 0.252 0.748 39 H 0.072 0.928 40 H 0.014 0.986 41 H 0.056 0.944 42 H 0.121 0.879 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 -23.250 -1.642 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.216 6.216 3 C 0.153 3.847 4 C -0.212 4.212 5 C -0.012 4.012 6 C -0.240 4.240 7 C 0.354 3.646 8 O -0.461 6.461 9 N -0.355 5.355 10 C 0.019 3.981 11 C 0.016 3.984 12 H 0.085 0.915 13 C 0.032 3.968 14 N -0.339 5.339 15 C -0.396 4.396 16 H 0.092 0.908 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.201 1.201 21 H -0.222 1.222 22 H -0.201 1.201 23 C -0.024 4.024 24 C -0.020 4.020 25 O -0.308 6.308 26 C 0.028 3.972 27 N -0.276 5.276 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.190 0.810 32 H 0.177 0.823 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.917 -23.582 -1.728 25.271 hybrid contribution 0.591 1.538 0.739 1.806 sum -8.326 -22.045 -0.989 23.585 Atomic orbital electron populations 1.23155 0.75363 1.05009 1.02639 1.86221 1.24768 1.23962 1.86693 1.20399 0.90118 0.85029 0.89181 1.21265 0.91675 1.00052 1.08200 1.21676 1.01689 0.89763 0.88029 1.20688 0.95723 0.93660 1.13933 1.18221 0.86154 0.84571 0.75640 1.90773 1.15480 1.87582 1.52267 1.45674 1.10883 1.04842 1.74063 1.21150 0.94515 0.80015 1.02418 1.22763 0.92201 0.94849 0.88572 0.91507 1.21096 0.89701 0.85958 1.00094 1.44346 1.33457 1.24787 1.31295 1.19514 0.93466 1.07344 1.19291 0.90830 1.25841 0.94944 1.00626 1.03204 1.70176 0.97514 1.49183 1.41251 0.85306 0.76347 0.78900 0.79684 1.20097 1.22210 1.20052 1.21833 0.93601 0.97178 0.89824 1.23085 0.87764 0.88368 1.02817 1.87790 1.42395 1.57445 1.43203 1.22904 0.91262 0.94552 0.88504 1.67376 1.40712 0.98804 1.20720 0.92165 0.92146 0.85708 0.80971 0.82330 0.74872 0.90270 0.92026 0.91414 0.98175 0.93929 0.90978 0.96751 0.92593 0.86080 0.79910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.37 113.37 1.18 1.54 16 2 O -0.31 -5.18 10.46 -88.02 -0.92 -6.10 16 3 C 0.33 6.25 7.49 84.83 0.64 6.88 16 4 C -0.19 -3.19 10.02 22.43 0.22 -2.96 16 5 C 0.01 0.27 9.70 22.70 0.22 0.49 16 6 C -0.23 -5.19 5.89 -19.99 -0.12 -5.31 16 7 C 0.57 16.02 7.77 86.72 0.67 16.70 16 8 O -0.58 -20.88 16.41 -3.98 -0.07 -20.95 16 9 N -0.70 -18.66 5.40 -466.17 -2.52 -21.18 16 10 C 0.14 4.73 5.37 86.38 0.46 5.20 16 11 C 0.08 2.72 2.86 30.69 0.09 2.80 16 12 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 13 C 0.16 7.49 4.73 86.35 0.41 7.90 16 14 N -0.61 -30.21 3.05 -697.57 -2.13 -32.34 16 15 C -0.27 -14.25 9.65 84.03 0.81 -13.44 16 16 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 17 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 18 N -0.94 -54.80 11.14 21.65 0.24 -54.56 16 19 Si 0.97 43.88 29.59 68.60 2.03 45.91 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.10 3.99 6.74 86.35 0.58 4.57 16 24 C 0.06 1.75 6.98 72.08 0.50 2.25 16 25 O -0.39 -13.07 10.14 -148.98 -1.51 -14.58 16 26 C 0.19 3.50 10.71 85.03 0.91 4.41 16 27 N -0.55 -10.89 9.18 -307.82 -2.82 -13.72 16 28 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 30 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.16 2.94 7.73 -2.91 -0.02 2.92 16 33 H 0.41 8.69 6.40 -92.71 -0.59 8.10 16 34 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 3.59 6.14 -2.39 -0.01 3.57 16 37 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.07 2.66 7.96 -2.39 -0.02 2.64 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.18 2.55 6.41 -2.91 -0.02 2.53 16 Total: -1.00 -70.80 360.16 -0.26 -71.06 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.44 Total: 17.76 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 7.00 Total: 28.69 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -7.23 Total: -121.79 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -2.50 Total: -41.63 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -70.80 -0.26 -71.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035439749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.424 kcal (2) G-P(sol) polarization free energy of solvation -70.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds