Wall clock time and date at job start Tue Mar 31 2020 13:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35675 * 117.00181 * 2 1 4 4 C 1.39281 * 119.61842 * 179.97438 * 3 2 1 5 5 C 1.38323 * 119.30670 * 180.02562 * 4 3 2 6 6 C 1.38789 * 118.55778 * 359.73745 * 5 4 3 7 7 C 1.39125 * 119.18710 * 0.52643 * 6 5 4 8 8 C 1.48149 * 119.69200 * 179.73168 * 7 6 5 9 9 O 1.21521 * 119.99887 * 359.73026 * 8 7 6 10 10 N 1.34771 * 120.00340 * 179.72822 * 8 7 6 11 11 C 1.46503 * 120.00194 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46847 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50946 * 60.10345 * 12 11 10 14 14 C 1.53717 * 109.48148 * 180.36236 * 12 11 10 15 15 N 1.47154 * 108.16009 * 172.39943 * 14 12 11 16 16 C 1.36931 * 120.97887 * 129.43492 * 15 14 12 17 17 H 1.08005 * 120.00440 * 333.49504 * 16 15 14 18 18 C 1.38812 * 119.99878 * 153.49544 * 16 15 14 19 19 N 1.31622 * 120.00058 * 343.08256 * 18 16 15 20 20 Si 1.86803 * 119.99905 * 162.80886 * 18 16 15 21 21 H 1.48497 * 109.46927 * 90.00263 * 20 18 16 22 22 H 1.48506 * 109.46836 * 209.99902 * 20 18 16 23 23 H 1.48490 * 109.47352 * 329.99799 * 20 18 16 24 24 C 1.47149 * 118.03579 * 309.15864 * 15 14 12 25 25 C 1.53296 * 108.38694 * 50.78628 * 24 15 14 26 26 O 1.42963 * 109.22250 * 307.69880 * 25 24 15 27 27 N 1.31907 * 119.61528 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47270 * 300.00390 * 1 2 3 30 30 H 1.09006 * 109.46725 * 60.00229 * 1 2 3 31 31 H 1.08007 * 120.34796 * 0.04852 * 4 3 2 32 32 H 1.07998 * 120.72257 * 179.97438 * 5 4 3 33 33 H 1.08005 * 120.40718 * 180.28507 * 6 5 4 34 34 H 0.97001 * 119.99690 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.46958 * 60.00489 * 11 10 8 36 36 H 1.08997 * 109.46760 * 300.00352 * 11 10 8 37 37 H 1.08999 * 109.83737 * 52.72102 * 14 12 11 38 38 H 1.09001 * 109.74797 * 292.02541 * 14 12 11 39 39 H 0.96999 * 120.00005 * 180.02562 * 19 18 16 40 40 H 1.08993 * 109.68413 * 170.50997 * 24 15 14 41 41 H 1.08997 * 109.68203 * 291.02940 * 24 15 14 42 42 H 1.09004 * 109.50741 * 67.61742 * 25 24 15 43 43 H 1.08993 * 109.51437 * 187.72356 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0576 2.5083 0.0011 6 6 3.2665 3.6486 -0.0045 7 6 1.8818 3.5137 0.0007 8 6 1.0267 4.7235 0.0008 9 8 1.5354 5.8271 0.0013 10 7 -0.3154 4.6001 0.0003 11 6 -1.1610 5.7965 0.0010 12 6 -2.6333 5.3803 0.0009 13 1 -2.8442 4.7880 0.8913 14 6 -3.5209 6.6353 -0.0076 15 7 -4.9170 6.2085 -0.1925 16 6 -5.9061 6.6515 0.6444 17 1 -5.6666 6.9455 1.6557 18 6 -7.2169 6.7228 0.1930 19 7 -7.4708 6.6925 -1.0982 20 14 -8.6208 6.8540 1.4182 21 1 -8.9015 8.2851 1.6979 22 1 -9.8344 6.2133 0.8508 23 1 -8.2427 6.1679 2.6797 24 6 -5.2196 5.2965 -1.3069 25 6 -4.2501 4.1110 -1.2384 26 8 -2.9097 4.6026 -1.1665 27 7 1.3192 2.3103 0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 4.0240 0.3663 0.0002 32 1 5.1349 2.5842 0.0019 33 1 3.7203 4.6287 -0.0089 34 1 -0.7214 3.7192 0.0002 35 1 -0.9509 6.3904 -0.8885 36 1 -0.9513 6.3890 0.8915 37 1 -3.2260 7.2913 -0.8266 38 1 -3.4210 7.1634 0.9407 39 1 -8.3867 6.7426 -1.4136 40 1 -6.2450 4.9377 -1.2195 41 1 -5.0934 5.8202 -2.2544 42 1 -4.4670 3.5141 -0.3525 43 1 -4.3653 3.4946 -2.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035569835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:45 Heat of formation + Delta-G solvation = -50.031619 kcal Electronic energy + Delta-G solvation = -26852.695954 eV Core-core repulsion = 22899.610305 eV Total energy + Delta-G solvation = -3953.085649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10405 -39.56730 -38.51205 -37.81933 -34.98776 -34.31964 -33.02087 -31.56498 -31.15582 -30.55407 -27.81909 -27.45549 -25.89159 -24.31315 -23.22805 -23.13846 -21.86295 -20.88065 -19.76654 -18.73282 -17.90597 -16.95848 -16.37800 -16.34306 -16.26389 -16.00557 -15.77030 -15.02937 -14.98091 -14.50853 -14.37315 -14.33847 -13.85171 -13.65888 -13.53068 -13.23577 -13.05671 -12.74102 -12.55467 -12.36615 -12.04432 -11.57654 -11.44404 -11.14898 -10.87496 -10.76076 -10.62007 -10.42365 -10.33170 -10.31474 -10.01015 -9.86956 -9.65617 -9.10028 -9.05386 -8.82416 -8.56680 -6.78131 -5.87145 -3.30763 0.36918 0.92293 2.62062 2.73891 3.04189 3.32287 3.39410 3.41440 3.61020 3.80429 4.21837 4.40680 4.54290 4.66448 4.67480 4.93594 5.04915 5.11090 5.11599 5.14628 5.30495 5.43477 5.45674 5.48252 5.59210 5.75600 5.78588 5.82965 5.97271 6.01076 6.12837 6.26662 6.34636 6.45830 6.47535 6.72842 6.84676 7.07632 7.26075 7.49007 7.59837 7.68168 7.83005 8.14524 8.30583 9.08517 9.71256 10.28156 11.20975 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.002684 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.529902 B =10429.157819 C =11194.304698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.308 6.308 3 C 0.321 3.679 4 C -0.170 4.170 5 C -0.048 4.048 6 C -0.149 4.149 7 C 0.124 3.876 8 C 0.566 3.434 9 O -0.535 6.535 10 N -0.696 5.696 11 C 0.128 3.872 12 C 0.065 3.935 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.140 3.860 25 C 0.040 3.960 26 O -0.389 6.389 27 N -0.516 5.516 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.413 0.587 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.041 0.959 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.892 -12.734 1.883 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.214 6.214 3 C 0.139 3.861 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.171 4.171 7 C -0.013 4.013 8 C 0.350 3.650 9 O -0.412 6.412 10 N -0.346 5.346 11 C 0.004 3.996 12 C 0.005 3.995 13 H 0.077 0.923 14 C -0.005 4.005 15 N -0.318 5.318 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.014 3.986 25 C -0.038 4.038 26 O -0.309 6.309 27 N -0.243 5.243 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.331 -12.263 1.667 22.953 hybrid contribution -0.686 -0.188 0.656 0.968 sum 18.644 -12.450 2.323 22.539 Atomic orbital electron populations 1.22947 0.76584 1.03336 1.02987 1.86242 1.23391 1.24024 1.87759 1.19780 0.89410 0.84474 0.92417 1.21294 0.91985 0.99921 1.05843 1.21454 1.00928 0.90795 0.94148 1.22009 0.93021 1.00929 1.01122 1.20849 0.92253 0.90202 0.97950 1.17843 0.82441 0.87299 0.77428 1.90794 1.74025 1.25778 1.50584 1.45797 1.05231 1.11356 1.72257 1.21537 0.87904 0.87025 1.03133 1.22897 0.92610 0.95209 0.88807 0.92272 1.21530 0.86270 0.92771 0.99961 1.44084 1.01840 1.51946 1.33901 1.19184 0.87019 1.39881 0.92432 0.91345 1.25057 0.98390 1.00499 0.95695 1.70033 1.19129 1.53672 1.11849 0.86259 0.81838 0.77863 0.80589 1.21270 1.21471 1.20436 1.21440 0.98268 0.88623 0.90280 1.23319 0.82762 0.97529 1.00147 1.87785 1.30321 1.69965 1.42782 1.67172 1.41053 0.98250 1.17788 0.88378 0.91990 0.91806 0.83601 0.83277 0.83057 0.75074 0.90365 0.89845 0.95134 0.91712 0.93474 0.88780 0.95369 0.94102 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.12 10.48 -18.73 -0.20 -3.32 16 3 C 0.32 3.43 7.49 -17.13 -0.13 3.30 16 4 C -0.17 -1.38 10.04 -39.16 -0.39 -1.78 16 5 C -0.05 -0.35 10.16 -39.35 -0.40 -0.75 16 6 C -0.15 -1.50 9.63 -39.05 -0.38 -1.87 16 7 C 0.12 1.55 6.74 -83.03 -0.56 0.99 16 8 C 0.57 8.30 7.81 -12.19 -0.10 8.20 16 9 O -0.53 -9.06 16.32 5.35 0.09 -8.97 16 10 N -0.70 -10.00 5.44 -61.15 -0.33 -10.33 16 11 C 0.13 1.95 5.37 -4.04 -0.02 1.92 16 12 C 0.06 1.13 2.88 -26.36 -0.08 1.05 16 13 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.12 2.52 6.05 -3.31 -0.02 2.50 16 15 N -0.59 -14.74 3.04 -171.57 -0.52 -15.26 16 16 C -0.26 -6.90 9.65 -15.06 -0.15 -7.04 16 17 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 19 N -0.90 -25.80 11.14 55.49 0.62 -25.18 16 20 Si 0.91 21.26 29.59 -169.99 -5.03 16.23 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 C 0.14 3.29 5.44 -3.53 -0.02 3.27 16 25 C 0.04 0.76 6.99 37.31 0.26 1.02 16 26 O -0.39 -7.27 10.13 -35.23 -0.36 -7.63 16 27 N -0.52 -6.22 8.39 -9.88 -0.08 -6.30 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 33 H 0.15 1.42 7.63 -52.48 -0.40 1.02 16 34 H 0.41 5.69 7.68 -40.82 -0.31 5.38 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -32.03 362.48 -7.43 -39.45 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.06 Total: 3.69 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -1.01 Total: 12.16 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.32 Total: -57.08 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.47 Total: -19.91 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.03 -7.43 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035569835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.577 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds