Wall clock time and date at job start Tue Mar 31 2020 13:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35675 * 117.00181 * 2 1 4 4 C 1.39281 * 119.61842 * 179.97438 * 3 2 1 5 5 C 1.38323 * 119.30670 * 180.02562 * 4 3 2 6 6 C 1.38789 * 118.55778 * 359.73745 * 5 4 3 7 7 C 1.39125 * 119.18710 * 0.52643 * 6 5 4 8 8 C 1.48149 * 119.69200 * 179.73168 * 7 6 5 9 9 O 1.21521 * 119.99887 * 359.73026 * 8 7 6 10 10 N 1.34771 * 120.00340 * 179.72822 * 8 7 6 11 11 C 1.46503 * 120.00194 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46847 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50946 * 60.10345 * 12 11 10 14 14 C 1.53717 * 109.48148 * 180.36236 * 12 11 10 15 15 N 1.47154 * 108.16009 * 172.39943 * 14 12 11 16 16 C 1.36931 * 120.97887 * 129.43492 * 15 14 12 17 17 H 1.08005 * 120.00440 * 333.49504 * 16 15 14 18 18 C 1.38812 * 119.99878 * 153.49544 * 16 15 14 19 19 N 1.31622 * 120.00058 * 343.08256 * 18 16 15 20 20 Si 1.86803 * 119.99905 * 162.80886 * 18 16 15 21 21 H 1.48497 * 109.46927 * 90.00263 * 20 18 16 22 22 H 1.48506 * 109.46836 * 209.99902 * 20 18 16 23 23 H 1.48490 * 109.47352 * 329.99799 * 20 18 16 24 24 C 1.47149 * 118.03579 * 309.15864 * 15 14 12 25 25 C 1.53296 * 108.38694 * 50.78628 * 24 15 14 26 26 O 1.42963 * 109.22250 * 307.69880 * 25 24 15 27 27 N 1.31907 * 119.61528 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47270 * 300.00390 * 1 2 3 30 30 H 1.09006 * 109.46725 * 60.00229 * 1 2 3 31 31 H 1.08007 * 120.34796 * 0.04852 * 4 3 2 32 32 H 1.07998 * 120.72257 * 179.97438 * 5 4 3 33 33 H 1.08005 * 120.40718 * 180.28507 * 6 5 4 34 34 H 0.97001 * 119.99690 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.46958 * 60.00489 * 11 10 8 36 36 H 1.08997 * 109.46760 * 300.00352 * 11 10 8 37 37 H 1.08999 * 109.83737 * 52.72102 * 14 12 11 38 38 H 1.09001 * 109.74797 * 292.02541 * 14 12 11 39 39 H 0.96999 * 120.00005 * 180.02562 * 19 18 16 40 40 H 1.08993 * 109.68413 * 170.50997 * 24 15 14 41 41 H 1.08997 * 109.68203 * 291.02940 * 24 15 14 42 42 H 1.09004 * 109.50741 * 67.61742 * 25 24 15 43 43 H 1.08993 * 109.51437 * 187.72356 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0576 2.5083 0.0011 6 6 3.2665 3.6486 -0.0045 7 6 1.8818 3.5137 0.0007 8 6 1.0267 4.7235 0.0008 9 8 1.5354 5.8271 0.0013 10 7 -0.3154 4.6001 0.0003 11 6 -1.1610 5.7965 0.0010 12 6 -2.6333 5.3803 0.0009 13 1 -2.8442 4.7880 0.8913 14 6 -3.5209 6.6353 -0.0076 15 7 -4.9170 6.2085 -0.1925 16 6 -5.9061 6.6515 0.6444 17 1 -5.6666 6.9455 1.6557 18 6 -7.2169 6.7228 0.1930 19 7 -7.4708 6.6925 -1.0982 20 14 -8.6208 6.8540 1.4182 21 1 -8.9015 8.2851 1.6979 22 1 -9.8344 6.2133 0.8508 23 1 -8.2427 6.1679 2.6797 24 6 -5.2196 5.2965 -1.3069 25 6 -4.2501 4.1110 -1.2384 26 8 -2.9097 4.6026 -1.1665 27 7 1.3192 2.3103 0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 4.0240 0.3663 0.0002 32 1 5.1349 2.5842 0.0019 33 1 3.7203 4.6287 -0.0089 34 1 -0.7214 3.7192 0.0002 35 1 -0.9509 6.3904 -0.8885 36 1 -0.9513 6.3890 0.8915 37 1 -3.2260 7.2913 -0.8266 38 1 -3.4210 7.1634 0.9407 39 1 -8.3867 6.7426 -1.4136 40 1 -6.2450 4.9377 -1.2195 41 1 -5.0934 5.8202 -2.2544 42 1 -4.4670 3.5141 -0.3525 43 1 -4.3653 3.4946 -2.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035569835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:44 Heat of formation + Delta-G solvation = -74.323964 kcal Electronic energy + Delta-G solvation = -26853.749349 eV Core-core repulsion = 22899.610305 eV Total energy + Delta-G solvation = -3954.139044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91616 -40.69381 -39.96421 -38.64345 -36.56106 -35.85787 -33.84023 -33.30948 -32.35190 -31.78471 -29.32344 -28.35839 -27.37481 -25.45198 -24.88836 -23.92298 -23.33366 -21.99723 -21.38886 -19.66100 -18.88071 -18.76293 -17.61525 -17.24701 -17.06852 -17.01219 -16.88391 -16.81824 -16.23723 -16.03500 -15.60820 -15.48666 -15.16711 -15.00549 -14.71381 -14.54058 -14.36712 -14.19674 -13.66233 -13.24458 -13.20480 -13.02297 -12.70405 -12.68667 -12.52045 -12.21190 -12.17717 -12.10445 -11.89777 -11.69092 -11.34784 -11.01714 -10.82833 -10.72780 -10.55218 -10.22835 -9.61448 -8.77181 -7.92723 -5.40162 -0.42606 0.23338 1.46006 1.47313 1.57285 1.64127 1.93739 2.08962 2.47008 2.73324 2.78184 2.96358 3.22696 3.46820 3.79483 3.92938 3.94101 4.03486 4.03830 4.20869 4.26718 4.44205 4.44700 4.45841 4.48984 4.49071 4.59280 4.69989 4.73913 4.80920 4.87077 4.94217 5.03097 5.11571 5.21728 5.27268 5.34761 5.53721 5.59622 6.10140 6.23091 6.30088 6.32980 6.64309 7.03310 7.04577 7.72472 8.26344 9.13450 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.002684 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.529902 B =10429.157819 C =11194.304698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.300 3.700 4 C -0.157 4.157 5 C -0.034 4.034 6 C -0.148 4.148 7 C 0.095 3.905 8 C 0.566 3.434 9 O -0.564 6.564 10 N -0.694 5.694 11 C 0.138 3.862 12 C 0.079 3.921 13 H 0.067 0.933 14 C 0.118 3.882 15 N -0.613 5.613 16 C -0.267 4.267 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.144 3.856 25 C 0.054 3.946 26 O -0.391 6.391 27 N -0.532 5.532 28 H 0.123 0.877 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.176 0.824 32 H 0.193 0.807 33 H 0.155 0.845 34 H 0.416 0.584 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.252 0.748 40 H 0.068 0.932 41 H -0.001 1.001 42 H 0.051 0.949 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.995 -14.497 2.944 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.220 6.220 3 C 0.118 3.882 4 C -0.178 4.178 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.041 4.041 8 C 0.351 3.649 9 O -0.444 6.444 10 N -0.344 5.344 11 C 0.013 3.987 12 C 0.019 3.981 13 H 0.085 0.915 14 C -0.009 4.009 15 N -0.338 5.338 16 C -0.397 4.397 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.193 1.193 24 C 0.018 3.982 25 C -0.023 4.023 26 O -0.310 6.310 27 N -0.259 5.259 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.194 0.806 32 H 0.210 0.790 33 H 0.172 0.828 34 H 0.253 0.747 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.069 0.931 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.459 -14.039 2.739 25.789 hybrid contribution -1.247 0.347 0.308 1.330 sum 20.212 -13.691 3.047 24.602 Atomic orbital electron populations 1.23048 0.76033 1.04734 1.02183 1.86242 1.24023 1.23850 1.87875 1.20199 0.90578 0.84209 0.93212 1.21741 0.91080 1.01477 1.03469 1.21912 1.02696 0.89282 0.92024 1.22213 0.92240 1.02265 1.00297 1.20599 0.92859 0.89523 1.01117 1.18210 0.82390 0.87872 0.76384 1.90765 1.74461 1.27093 1.52048 1.45723 1.05342 1.11035 1.72339 1.21348 0.86628 0.87409 1.03268 1.22740 0.93180 0.93445 0.88704 0.91492 1.21679 0.84878 0.94333 0.99985 1.44367 1.03062 1.52551 1.33773 1.19547 0.87881 1.39269 0.92997 0.90924 1.25847 1.00697 1.00768 0.97261 1.70191 1.19217 1.55143 1.13626 0.85216 0.78538 0.77628 0.78674 1.21189 1.21741 1.19283 1.21301 0.98292 0.89832 0.88737 1.23159 0.81597 0.95623 1.01945 1.87801 1.29818 1.69929 1.43428 1.67016 1.41939 0.98497 1.18462 0.85923 0.92608 0.92768 0.80627 0.79034 0.82754 0.74690 0.91381 0.88663 0.96223 0.90746 0.93903 0.91366 0.98322 0.93115 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.38 113.37 1.18 1.72 16 2 O -0.31 -5.84 10.48 -89.93 -0.94 -6.78 16 3 C 0.30 5.88 7.49 84.93 0.64 6.52 16 4 C -0.16 -2.04 10.04 22.54 0.23 -1.81 16 5 C -0.03 -0.38 10.16 22.42 0.23 -0.15 16 6 C -0.15 -2.70 9.63 22.61 0.22 -2.48 16 7 C 0.09 2.29 6.74 41.84 0.28 2.57 16 8 C 0.57 16.50 7.81 86.88 0.68 17.17 16 9 O -0.56 -19.14 16.32 -3.78 -0.06 -19.20 16 10 N -0.69 -19.69 5.44 -465.67 -2.53 -22.22 16 11 C 0.14 4.14 5.37 86.38 0.46 4.60 16 12 C 0.08 2.70 2.88 30.84 0.09 2.79 16 13 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 14 C 0.12 4.88 6.05 86.50 0.52 5.40 16 15 N -0.61 -30.85 3.04 -696.73 -2.12 -32.97 16 16 C -0.27 -14.52 9.65 84.03 0.81 -13.71 16 17 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 18 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 19 N -0.94 -54.91 11.14 21.65 0.24 -54.67 16 20 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 C 0.14 6.95 5.44 86.35 0.47 7.42 16 25 C 0.05 2.03 6.99 72.08 0.50 2.53 16 26 O -0.39 -14.30 10.13 -148.98 -1.51 -15.80 16 27 N -0.53 -12.37 8.39 -298.20 -2.50 -14.87 16 28 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 30 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 31 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.15 2.66 7.63 -2.91 -0.02 2.63 16 34 H 0.42 11.27 7.68 -92.71 -0.71 10.56 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 2.89 7.96 -2.39 -0.02 2.87 16 39 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.07 3.63 6.14 -2.39 -0.01 3.62 16 41 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -70.63 362.48 -0.35 -70.98 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.32 Total: 19.21 kcal Atomic # 6 Polarization: 23.51 SS G_CDS: 6.73 Total: 30.23 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -6.91 Total: -124.73 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.51 Total: -41.79 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.63 -0.35 -70.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035569835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.347 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds