Wall clock time and date at job start Tue Mar 31 2020 13:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35650 * 116.99537 * 2 1 4 4 C 1.39342 * 120.54414 * 0.02562 * 3 2 1 5 5 C 1.38301 * 118.44104 * 179.97438 * 4 3 2 6 6 C 1.38768 * 119.44240 * 0.02562 * 5 4 3 7 7 N 1.31371 * 121.07019 * 359.73699 * 6 5 4 8 8 C 1.32864 * 121.69304 * 0.53464 * 7 6 5 9 9 C 1.47835 * 119.77986 * 179.75018 * 8 7 6 10 10 O 1.21559 * 119.99623 * 179.72363 * 9 8 7 11 11 N 1.34767 * 120.00203 * 359.72075 * 9 8 7 12 12 C 1.46504 * 120.00116 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47194 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.51736 * 304.99905 * 13 12 11 15 15 C 1.53300 * 109.51454 * 184.89947 * 13 12 11 16 16 N 1.47147 * 108.38671 * 187.77241 * 15 13 12 17 17 C 1.36934 * 120.98250 * 230.55616 * 16 15 13 18 18 H 1.07998 * 120.00162 * 26.24448 * 17 16 15 19 19 C 1.38809 * 119.99826 * 206.24237 * 17 16 15 20 20 N 1.31625 * 120.00242 * 16.90555 * 19 17 16 21 21 Si 1.86801 * 120.00069 * 196.90464 * 19 17 16 22 22 H 1.48506 * 109.46895 * 90.00009 * 21 19 17 23 23 H 1.48500 * 109.47268 * 210.00083 * 21 19 17 24 24 H 1.48496 * 109.47200 * 330.00518 * 21 19 17 25 25 C 1.47156 * 118.03411 * 50.53773 * 16 15 13 26 26 C 1.53298 * 108.38322 * 309.45892 * 25 16 15 27 27 O 1.42963 * 109.51283 * 65.10193 * 13 12 11 28 28 H 1.08994 * 109.47390 * 300.00223 * 1 2 3 29 29 H 1.09000 * 109.46896 * 60.00736 * 1 2 3 30 30 H 1.09006 * 109.46786 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.77424 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.27904 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.46283 * 180.02562 * 6 5 4 34 34 H 0.97001 * 120.00195 * 0.02562 * 11 9 8 35 35 H 1.08993 * 109.46960 * 300.00128 * 12 11 9 36 36 H 1.09003 * 109.46857 * 60.00416 * 12 11 9 37 37 H 1.09003 * 109.67681 * 307.50048 * 15 13 12 38 38 H 1.09003 * 109.67721 * 68.01116 * 15 13 12 39 39 H 0.97002 * 120.00005 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.68212 * 69.18371 * 25 16 15 41 41 H 1.09003 * 109.68218 * 189.70355 * 25 16 15 42 42 H 1.09001 * 109.51033 * 172.22382 * 26 25 16 43 43 H 1.08996 * 109.51807 * 292.38052 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9695 3.5929 0.0011 6 6 3.3571 3.6012 0.0005 7 7 4.0419 2.4801 0.0046 8 6 3.4409 1.2951 -0.0010 9 6 4.2532 0.0599 -0.0016 10 8 3.7075 -1.0263 -0.0017 11 7 5.5986 0.1381 -0.0021 12 6 6.4035 -1.0860 -0.0033 13 6 7.8890 -0.7196 -0.0030 14 1 8.1014 -0.0595 -0.8440 15 6 8.7309 -1.9946 -0.1276 16 7 10.1456 -1.6372 0.0629 17 6 11.1006 -2.0372 -0.8331 18 1 10.8294 -2.2328 -1.8600 19 6 12.4173 -2.1914 -0.4216 20 7 12.6996 -2.2831 0.8608 21 14 13.7886 -2.2686 -1.6876 22 1 14.2935 -0.8977 -1.9546 23 1 14.8954 -3.1112 -1.1677 24 1 13.2672 -2.8580 -2.9469 25 6 10.5035 -0.8367 1.2447 26 6 9.5753 0.3820 1.3024 27 8 8.2168 -0.0556 1.2199 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2173 2.3526 0.0014 32 1 1.4194 4.5222 0.0011 33 1 3.8827 4.5447 0.0013 34 1 6.0341 1.0049 -0.0017 35 1 6.1742 -1.6724 0.8863 36 1 6.1735 -1.6712 -0.8936 37 1 8.4272 -2.7111 0.6357 38 1 8.5920 -2.4310 -1.1167 39 1 13.6196 -2.3912 1.1483 40 1 10.3783 -1.4366 2.1461 41 1 11.5392 -0.5064 1.1644 42 1 9.7302 0.9134 2.2414 43 1 9.7944 1.0465 0.4667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035584344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:41 Heat of formation + Delta-G solvation = -47.055326 kcal Electronic energy + Delta-G solvation = -26777.209244 eV Core-core repulsion = 22824.252657 eV Total energy + Delta-G solvation = -3952.956587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15261 -39.18996 -38.46477 -38.21182 -34.79765 -34.20120 -32.78844 -31.48550 -31.12795 -30.47628 -27.87770 -27.45709 -25.84522 -24.33427 -23.19097 -23.08719 -21.78356 -20.71794 -19.65515 -18.60030 -17.82933 -17.40215 -16.83137 -16.30745 -15.94168 -15.58436 -15.55246 -14.92891 -14.82905 -14.68832 -14.33392 -14.16926 -13.89907 -13.67265 -13.64152 -13.15558 -12.98328 -12.82436 -12.66086 -12.21707 -11.86404 -11.83406 -11.49512 -11.09285 -10.83532 -10.68713 -10.37807 -10.29523 -10.22803 -10.19805 -9.95338 -9.77047 -9.57215 -9.00700 -8.92225 -8.67221 -8.51770 -6.72726 -5.81857 -3.25494 0.39122 0.87971 2.74228 2.81524 3.19804 3.36366 3.43162 3.44615 3.67804 4.02180 4.21425 4.30357 4.38589 4.45780 4.60714 4.72911 4.76214 4.84469 5.11474 5.18599 5.21488 5.35555 5.50748 5.57678 5.58218 5.59152 5.86838 5.93351 5.99286 6.11138 6.22117 6.35449 6.42463 6.53917 6.65075 6.80510 6.85262 7.14696 7.40684 7.55259 7.73339 7.77686 7.92354 8.35640 8.37306 9.13875 9.76592 10.33698 11.26210 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.002458 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.266035 B =11389.166694 C =11822.647800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.271 6.271 3 C 0.136 3.864 4 C -0.177 4.177 5 C -0.109 4.109 6 C 0.058 3.942 7 N -0.418 5.418 8 C 0.048 3.952 9 C 0.568 3.432 10 O -0.522 6.522 11 N -0.702 5.702 12 C 0.130 3.870 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.388 6.388 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.412 0.588 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.255 0.745 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.016 12.793 -1.246 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.085 3.915 4 C -0.204 4.204 5 C -0.129 4.129 6 C -0.103 4.103 7 N -0.129 5.129 8 C -0.091 4.091 9 C 0.352 3.648 10 O -0.397 6.397 11 N -0.353 5.353 12 C 0.007 3.993 13 C 0.005 3.995 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.318 5.318 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.014 3.986 26 C -0.038 4.038 27 O -0.308 6.308 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.345 11.720 -1.027 26.142 hybrid contribution -0.001 0.627 -0.701 0.940 sum -23.346 12.347 -1.728 26.466 Atomic orbital electron populations 1.23227 0.78562 1.04771 1.01124 1.86445 1.20872 1.24467 1.86305 1.20067 0.92350 0.85794 0.93307 1.21750 1.01068 0.91837 1.05716 1.22209 0.95803 0.98403 0.96530 1.22733 0.91360 0.96449 0.99735 1.67653 1.39914 0.97410 1.07970 1.20773 0.88590 0.92995 1.06755 1.17583 0.82338 0.87184 0.77740 1.90831 1.71785 1.27495 1.49609 1.45770 1.05283 1.10981 1.73310 1.21455 0.88426 0.86499 1.02968 1.22799 0.92425 0.96504 0.87729 0.92294 1.21446 0.86182 0.92971 0.99920 1.44070 1.01264 1.59719 1.26752 1.19215 0.88016 1.41055 0.90044 0.91307 1.25050 0.98489 1.00217 0.95960 1.70041 1.18433 1.52927 1.13341 0.86233 0.81828 0.77578 0.80794 1.21395 1.21700 1.20379 1.21453 0.98436 0.89515 0.89244 1.23317 0.82321 0.97968 1.00187 1.87802 1.28800 1.76503 1.37656 0.92513 0.92534 0.87558 0.83678 0.83962 0.81702 0.75219 0.90537 0.90008 0.95190 0.91755 0.93519 0.95382 0.88789 0.90079 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.12 16 2 O -0.27 -3.33 8.56 -40.60 -0.35 -3.67 16 3 C 0.14 1.59 6.71 -38.56 -0.26 1.33 16 4 C -0.18 -1.39 9.13 -39.15 -0.36 -1.75 16 5 C -0.11 -0.73 10.10 -39.36 -0.40 -1.12 16 6 C 0.06 0.49 11.17 -17.55 -0.20 0.30 16 7 N -0.42 -5.06 9.54 -9.71 -0.09 -5.16 16 8 C 0.05 0.66 6.76 -82.88 -0.56 0.10 16 9 C 0.57 9.24 7.80 -12.34 -0.10 9.14 16 10 O -0.52 -9.82 15.14 -16.64 -0.25 -10.07 16 11 N -0.70 -10.94 5.49 -61.26 -0.34 -11.28 16 12 C 0.13 2.13 5.34 -4.04 -0.02 2.11 16 13 C 0.07 1.20 2.81 -26.58 -0.07 1.13 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 15 C 0.12 2.61 6.02 -3.53 -0.02 2.59 16 16 N -0.59 -15.12 3.05 -171.82 -0.52 -15.64 16 17 C -0.25 -6.98 9.65 -15.06 -0.15 -7.12 16 18 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 19 C 0.00 0.04 4.95 -17.43 -0.09 -0.04 16 20 N -0.90 -26.22 11.14 55.49 0.62 -25.60 16 21 Si 0.91 21.63 29.59 -169.99 -5.03 16.60 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.14 3.37 5.45 -3.53 -0.02 3.35 16 26 C 0.04 0.79 6.98 37.31 0.26 1.05 16 27 O -0.39 -7.65 10.33 -35.23 -0.36 -8.01 16 28 H 0.06 0.28 7.69 -51.93 -0.40 -0.12 16 29 H 0.06 0.27 7.70 -51.93 -0.40 -0.13 16 30 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.15 0.69 6.46 -52.49 -0.34 0.35 16 32 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 33 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.41 6.10 7.80 -40.82 -0.32 5.79 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.48 6.14 -51.93 -0.32 2.16 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -34.35 358.07 -7.88 -42.23 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.97 Total: 3.03 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -0.98 Total: 12.18 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.33 Total: -57.68 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.96 Total: -21.76 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.35 -7.88 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035584344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.823 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds