Wall clock time and date at job start Tue Mar 31 2020 13:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35650 * 116.99537 * 2 1 4 4 C 1.39342 * 120.54414 * 0.02562 * 3 2 1 5 5 C 1.38301 * 118.44104 * 179.97438 * 4 3 2 6 6 C 1.38768 * 119.44240 * 0.02562 * 5 4 3 7 7 N 1.31371 * 121.07019 * 359.73699 * 6 5 4 8 8 C 1.32864 * 121.69304 * 0.53464 * 7 6 5 9 9 C 1.47835 * 119.77986 * 179.75018 * 8 7 6 10 10 O 1.21559 * 119.99623 * 179.72363 * 9 8 7 11 11 N 1.34767 * 120.00203 * 359.72075 * 9 8 7 12 12 C 1.46504 * 120.00116 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47194 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.51736 * 304.99905 * 13 12 11 15 15 C 1.53300 * 109.51454 * 184.89947 * 13 12 11 16 16 N 1.47147 * 108.38671 * 187.77241 * 15 13 12 17 17 C 1.36934 * 120.98250 * 230.55616 * 16 15 13 18 18 H 1.07998 * 120.00162 * 26.24448 * 17 16 15 19 19 C 1.38809 * 119.99826 * 206.24237 * 17 16 15 20 20 N 1.31625 * 120.00242 * 16.90555 * 19 17 16 21 21 Si 1.86801 * 120.00069 * 196.90464 * 19 17 16 22 22 H 1.48506 * 109.46895 * 90.00009 * 21 19 17 23 23 H 1.48500 * 109.47268 * 210.00083 * 21 19 17 24 24 H 1.48496 * 109.47200 * 330.00518 * 21 19 17 25 25 C 1.47156 * 118.03411 * 50.53773 * 16 15 13 26 26 C 1.53298 * 108.38322 * 309.45892 * 25 16 15 27 27 O 1.42963 * 109.51283 * 65.10193 * 13 12 11 28 28 H 1.08994 * 109.47390 * 300.00223 * 1 2 3 29 29 H 1.09000 * 109.46896 * 60.00736 * 1 2 3 30 30 H 1.09006 * 109.46786 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.77424 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.27904 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.46283 * 180.02562 * 6 5 4 34 34 H 0.97001 * 120.00195 * 0.02562 * 11 9 8 35 35 H 1.08993 * 109.46960 * 300.00128 * 12 11 9 36 36 H 1.09003 * 109.46857 * 60.00416 * 12 11 9 37 37 H 1.09003 * 109.67681 * 307.50048 * 15 13 12 38 38 H 1.09003 * 109.67721 * 68.01116 * 15 13 12 39 39 H 0.97002 * 120.00005 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.68212 * 69.18371 * 25 16 15 41 41 H 1.09003 * 109.68218 * 189.70355 * 25 16 15 42 42 H 1.09001 * 109.51033 * 172.22382 * 26 25 16 43 43 H 1.08996 * 109.51807 * 292.38052 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9695 3.5929 0.0011 6 6 3.3571 3.6012 0.0005 7 7 4.0419 2.4801 0.0046 8 6 3.4409 1.2951 -0.0010 9 6 4.2532 0.0599 -0.0016 10 8 3.7075 -1.0263 -0.0017 11 7 5.5986 0.1381 -0.0021 12 6 6.4035 -1.0860 -0.0033 13 6 7.8890 -0.7196 -0.0030 14 1 8.1014 -0.0595 -0.8440 15 6 8.7309 -1.9946 -0.1276 16 7 10.1456 -1.6372 0.0629 17 6 11.1006 -2.0372 -0.8331 18 1 10.8294 -2.2328 -1.8600 19 6 12.4173 -2.1914 -0.4216 20 7 12.6996 -2.2831 0.8608 21 14 13.7886 -2.2686 -1.6876 22 1 14.2935 -0.8977 -1.9546 23 1 14.8954 -3.1112 -1.1677 24 1 13.2672 -2.8580 -2.9469 25 6 10.5035 -0.8367 1.2447 26 6 9.5753 0.3820 1.3024 27 8 8.2168 -0.0556 1.2199 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2173 2.3526 0.0014 32 1 1.4194 4.5222 0.0011 33 1 3.8827 4.5447 0.0013 34 1 6.0341 1.0049 -0.0017 35 1 6.1742 -1.6724 0.8863 36 1 6.1735 -1.6712 -0.8936 37 1 8.4272 -2.7111 0.6357 38 1 8.5920 -2.4310 -1.1167 39 1 13.6196 -2.3912 1.1483 40 1 10.3783 -1.4366 2.1461 41 1 11.5392 -0.5064 1.1644 42 1 9.7302 0.9134 2.2414 43 1 9.7944 1.0465 0.4667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035584344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:40 Heat of formation + Delta-G solvation = -72.175569 kcal Electronic energy + Delta-G solvation = -26778.298539 eV Core-core repulsion = 22824.252657 eV Total energy + Delta-G solvation = -3954.045883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93996 -40.51033 -39.73439 -39.15305 -36.50620 -35.75448 -33.62197 -33.24578 -32.28718 -31.73591 -29.28610 -28.35062 -27.37741 -25.47799 -24.89384 -23.84860 -23.30979 -21.92934 -21.31670 -19.46140 -18.88926 -18.67401 -18.14733 -17.53316 -17.03572 -16.93344 -16.78208 -16.32501 -16.14121 -15.88202 -15.50690 -15.39000 -15.17389 -15.01104 -14.70914 -14.59446 -14.46601 -14.26477 -13.60860 -13.43245 -13.22581 -13.00724 -12.69575 -12.53549 -12.44333 -12.39966 -12.16737 -12.07998 -11.88110 -11.39627 -11.27747 -10.82720 -10.80654 -10.64561 -10.53552 -10.14440 -9.49053 -8.76616 -7.91445 -5.39248 -0.35792 0.23616 1.47183 1.48058 1.57514 1.75374 2.04868 2.21684 2.48068 2.76587 2.84232 3.21356 3.23663 3.48051 3.59992 3.76976 3.96385 4.01502 4.06022 4.18921 4.25450 4.30410 4.36570 4.45498 4.50537 4.51581 4.60316 4.70984 4.71665 4.75591 4.88195 4.91777 5.02219 5.04774 5.23349 5.37691 5.43586 5.54569 5.60450 6.22008 6.25180 6.32437 6.44549 6.82462 7.05417 7.18969 7.73136 8.27411 9.14790 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.002458 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.266035 B =11389.166694 C =11822.647800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.123 3.877 4 C -0.171 4.171 5 C -0.086 4.086 6 C 0.052 3.948 7 N -0.442 5.442 8 C 0.003 3.997 9 C 0.563 3.437 10 O -0.559 6.559 11 N -0.699 5.699 12 C 0.141 3.859 13 C 0.080 3.920 14 H 0.067 0.933 15 C 0.118 3.882 16 N -0.613 5.613 17 C -0.267 4.267 18 H 0.073 0.927 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.974 3.026 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.144 3.856 26 C 0.053 3.947 27 O -0.391 6.391 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.196 0.804 34 H 0.416 0.584 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.252 0.748 40 H -0.001 1.001 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.210 15.656 -2.236 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.072 3.928 4 C -0.197 4.197 5 C -0.106 4.106 6 C -0.110 4.110 7 N -0.154 5.154 8 C -0.134 4.134 9 C 0.350 3.650 10 O -0.438 6.438 11 N -0.351 5.351 12 C 0.016 3.984 13 C 0.021 3.979 14 H 0.085 0.915 15 C -0.008 4.008 16 N -0.337 5.337 17 C -0.396 4.396 18 H 0.091 0.909 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.801 3.199 22 H -0.208 1.208 23 H -0.222 1.222 24 H -0.193 1.193 25 C 0.018 3.982 26 C -0.024 4.024 27 O -0.310 6.310 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.197 0.803 32 H 0.207 0.793 33 H 0.213 0.787 34 H 0.253 0.747 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.567 14.586 -2.026 29.505 hybrid contribution 0.541 -0.194 -0.374 0.686 sum -25.026 14.392 -2.401 28.969 Atomic orbital electron populations 1.23525 0.76119 1.05846 1.03017 1.86386 1.23614 1.25570 1.86462 1.20279 0.92021 0.86970 0.93492 1.22184 1.02636 0.90697 1.04207 1.22745 0.95172 0.99742 0.92896 1.23415 0.92783 0.96321 0.98483 1.67559 1.41058 0.97810 1.08980 1.20390 0.89335 0.92466 1.11181 1.18100 0.82313 0.88063 0.76543 1.90785 1.72382 1.29186 1.51437 1.45686 1.05360 1.10600 1.73438 1.21242 0.87296 0.87009 1.02807 1.22634 0.92887 0.94843 0.87565 0.91475 1.21583 0.84754 0.94419 1.00059 1.44349 1.02496 1.60250 1.26648 1.19567 0.88834 1.40587 0.90654 0.90935 1.25855 1.00685 1.00336 0.97748 1.70200 1.18551 1.54256 1.15205 0.85174 0.78539 0.77503 0.78658 1.20831 1.22177 1.19275 1.21317 0.98324 0.90722 0.87831 1.23175 0.81241 0.95915 1.02089 1.87817 1.28442 1.76424 1.38343 0.90576 0.90476 0.87141 0.80252 0.79310 0.78742 0.74744 0.91823 0.89165 0.96306 0.90802 0.93897 0.98261 0.91258 0.87343 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.83 113.37 1.11 1.22 16 2 O -0.31 -7.56 8.56 -68.67 -0.59 -8.15 16 3 C 0.12 2.78 6.71 22.93 0.15 2.93 16 4 C -0.17 -2.08 9.13 22.55 0.21 -1.88 16 5 C -0.09 -0.75 10.10 22.41 0.23 -0.52 16 6 C 0.05 0.73 11.17 84.89 0.95 1.67 16 7 N -0.44 -10.22 9.54 -184.62 -1.76 -11.98 16 8 C 0.00 0.07 6.76 41.93 0.28 0.35 16 9 C 0.56 18.96 7.80 86.79 0.68 19.64 16 10 O -0.56 -22.06 15.14 17.09 0.26 -21.80 16 11 N -0.70 -22.18 5.49 -465.99 -2.56 -24.74 16 12 C 0.14 4.69 5.34 86.38 0.46 5.15 16 13 C 0.08 2.94 2.81 30.69 0.09 3.03 16 14 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.12 5.13 6.02 86.36 0.52 5.65 16 16 N -0.61 -31.75 3.05 -697.52 -2.13 -33.88 16 17 C -0.27 -14.81 9.65 84.03 0.81 -14.00 16 18 H 0.07 3.89 7.88 -2.91 -0.02 3.86 16 19 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 20 N -0.94 -55.79 11.14 21.65 0.24 -55.55 16 21 Si 0.97 44.84 29.59 68.60 2.03 46.87 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 C 0.14 7.15 5.45 86.35 0.47 7.62 16 26 C 0.05 2.09 6.98 72.08 0.50 2.59 16 27 O -0.39 -15.24 10.33 -148.98 -1.54 -16.78 16 28 H 0.08 0.56 7.69 -2.39 -0.02 0.54 16 29 H 0.08 0.55 7.70 -2.39 -0.02 0.53 16 30 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.18 0.84 6.46 -2.91 -0.02 0.82 16 32 H 0.19 -0.10 8.06 -2.91 -0.02 -0.12 16 33 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.42 12.35 7.80 -92.71 -0.72 11.63 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 3.01 7.96 -2.39 -0.02 2.99 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.07 3.78 6.14 -2.39 -0.01 3.76 16 42 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -78.23 358.07 1.15 -77.08 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.31 Total: 17.90 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: 6.88 Total: 31.03 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -6.21 Total: -126.15 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -1.87 Total: -46.72 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -78.23 1.15 -77.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035584344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.908 kcal (2) G-P(sol) polarization free energy of solvation -78.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds