Wall clock time and date at job start Tue Mar 31 2020 13:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35640 * 117.00000 * 2 1 4 4 C 1.39342 * 120.54091 * 0.02562 * 3 2 1 5 5 C 1.38308 * 118.43903 * 179.97438 * 4 3 2 6 6 C 1.38769 * 119.44560 * 0.02562 * 5 4 3 7 7 N 1.31382 * 121.06421 * 359.97438 * 6 5 4 8 8 C 1.32851 * 121.69659 * 0.02562 * 7 6 5 9 9 C 1.47829 * 119.78309 * 180.27378 * 8 7 6 10 10 O 1.21553 * 120.00182 * 179.71785 * 9 8 7 11 11 N 1.34781 * 119.99957 * 359.72273 * 9 8 7 12 12 C 1.46507 * 119.99998 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46624 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.51667 * 60.00076 * 13 12 11 15 15 C 1.53300 * 109.50655 * 180.10289 * 13 12 11 16 16 N 1.47153 * 108.38145 * 172.22597 * 15 13 12 17 17 C 1.36939 * 120.98173 * 129.48750 * 16 15 13 18 18 H 1.07994 * 119.99819 * 333.60179 * 17 16 15 19 19 C 1.38813 * 120.00019 * 153.60984 * 17 16 15 20 20 N 1.31622 * 119.99792 * 343.16038 * 19 17 16 21 21 Si 1.86801 * 120.00020 * 163.16656 * 19 17 16 22 22 H 1.48498 * 109.47164 * 94.42946 * 21 19 17 23 23 H 1.48509 * 109.46818 * 214.42805 * 21 19 17 24 24 H 1.48495 * 109.47117 * 334.42662 * 21 19 17 25 25 C 1.47157 * 118.03790 * 309.45759 * 16 15 13 26 26 C 1.53298 * 108.37970 * 50.53756 * 25 16 15 27 27 O 1.42951 * 109.26805 * 307.72513 * 26 25 16 28 28 H 1.08996 * 109.47370 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46934 * 300.00257 * 1 2 3 30 30 H 1.09002 * 109.46989 * 59.99867 * 1 2 3 31 31 H 1.07994 * 120.78270 * 359.95532 * 4 3 2 32 32 H 1.07994 * 120.28073 * 179.97438 * 5 4 3 33 33 H 1.07993 * 119.47003 * 179.97438 * 6 5 4 34 34 H 0.96994 * 119.99708 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.46760 * 299.99624 * 12 11 9 36 36 H 1.08999 * 109.46992 * 59.99472 * 12 11 9 37 37 H 1.09003 * 109.67995 * 291.94445 * 15 13 12 38 38 H 1.08995 * 109.68306 * 52.50186 * 15 13 12 39 39 H 0.97001 * 119.99523 * 180.02562 * 20 19 17 40 40 H 1.08995 * 109.68109 * 170.25736 * 25 16 15 41 41 H 1.09004 * 109.68002 * 290.78077 * 25 16 15 42 42 H 1.09000 * 109.51251 * 67.62369 * 26 25 16 43 43 H 1.08998 * 109.51185 * 187.72287 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3843 0.0005 5 6 1.9697 3.5928 0.0011 6 6 3.3574 3.6011 0.0005 7 7 4.0420 2.4798 0.0000 8 6 3.4411 1.2950 -0.0005 9 6 4.2531 0.0597 0.0050 10 8 3.7074 -1.0264 0.0098 11 7 5.5987 0.1378 0.0049 12 6 6.4035 -1.0864 0.0099 13 6 7.8889 -0.7200 0.0080 14 1 8.1197 -0.1304 0.8953 15 6 8.7320 -2.0004 0.0106 16 7 10.1426 -1.6276 -0.1801 17 6 11.1161 -2.0993 0.6595 18 1 10.8671 -2.3764 1.6732 19 6 12.4230 -2.2212 0.2078 20 7 12.6768 -2.2086 -1.0837 21 14 13.8216 -2.4032 1.4327 22 1 14.1191 -3.8441 1.6338 23 1 15.0301 -1.7165 0.9098 24 1 13.4274 -1.7936 2.7281 25 6 10.4764 -0.7333 -1.3001 26 6 9.5483 0.4852 -1.2389 27 8 8.1915 0.0415 -1.1634 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.2175 2.3527 0.0002 32 1 1.4197 4.5222 0.0011 33 1 3.8830 4.5445 0.0005 34 1 6.0341 1.0045 0.0008 35 1 6.1736 -1.6687 0.9021 36 1 6.1738 -1.6758 -0.8778 37 1 8.6141 -2.5156 0.9639 38 1 8.4115 -2.6526 -0.8018 39 1 13.5900 -2.2941 -1.3994 40 1 11.5136 -0.4095 -1.2147 41 1 10.3322 -1.2583 -2.2445 42 1 9.7857 1.0797 -0.3567 43 1 9.6845 1.0919 -2.1341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035584345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:45 Heat of formation + Delta-G solvation = -46.883676 kcal Electronic energy + Delta-G solvation = -26790.602073 eV Core-core repulsion = 22837.652929 eV Total energy + Delta-G solvation = -3952.949144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14798 -39.18748 -38.46153 -38.20821 -34.79351 -34.18869 -32.78382 -31.48723 -31.12427 -30.47321 -27.87569 -27.46023 -25.84169 -24.33190 -23.18882 -23.08313 -21.77941 -20.69315 -19.65877 -18.59839 -17.82747 -17.39825 -16.83082 -16.30373 -15.94920 -15.57307 -15.54248 -14.92355 -14.82626 -14.67804 -14.34229 -14.16822 -13.89860 -13.68179 -13.62415 -13.15708 -12.98963 -12.82469 -12.65453 -12.21144 -11.86073 -11.83089 -11.49041 -11.09580 -10.82447 -10.67038 -10.36873 -10.29510 -10.25984 -10.19349 -9.94948 -9.77019 -9.56408 -9.01029 -8.91282 -8.66355 -8.51623 -6.72112 -5.82012 -3.25340 0.39641 0.88431 2.74764 2.81858 3.20386 3.35806 3.42935 3.45361 3.68364 4.02597 4.21715 4.29972 4.39714 4.45884 4.61370 4.73236 4.76413 4.84989 5.11886 5.19304 5.21878 5.35757 5.50985 5.57216 5.58207 5.59576 5.87475 5.93391 5.99767 6.11452 6.22257 6.35968 6.42559 6.54030 6.65576 6.80561 6.85683 7.14701 7.41404 7.55250 7.73348 7.79021 7.92092 8.35820 8.38186 9.13918 9.76759 10.33924 11.26165 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.002461 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.622656 B =11373.770225 C =11857.386941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.136 3.864 4 C -0.177 4.177 5 C -0.109 4.109 6 C 0.058 3.942 7 N -0.418 5.418 8 C 0.048 3.952 9 C 0.567 3.433 10 O -0.522 6.522 11 N -0.701 5.701 12 C 0.131 3.869 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.388 6.388 28 H 0.106 0.894 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.413 0.587 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.041 0.959 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.947 12.724 1.857 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.085 3.915 4 C -0.204 4.204 5 C -0.130 4.130 6 C -0.103 4.103 7 N -0.129 5.129 8 C -0.091 4.091 9 C 0.351 3.649 10 O -0.398 6.398 11 N -0.353 5.353 12 C 0.007 3.993 13 C 0.005 3.995 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.318 5.318 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.014 3.986 26 C -0.038 4.038 27 O -0.307 6.307 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.249 0.751 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.277 11.686 1.646 26.098 hybrid contribution 0.018 0.537 0.655 0.847 sum -23.259 12.223 2.302 26.376 Atomic orbital electron populations 1.23226 0.78565 1.04765 1.01124 1.86442 1.20867 1.24477 1.86305 1.20067 0.92353 0.85791 0.93318 1.21749 1.01062 0.91838 1.05733 1.22211 0.95804 0.98400 0.96539 1.22734 0.91356 0.96449 0.99740 1.67654 1.39907 0.97408 1.07950 1.20770 0.88583 0.93001 1.06739 1.17587 0.82350 0.87179 0.77752 1.90828 1.71790 1.27499 1.49652 1.45747 1.05239 1.11028 1.73244 1.21466 0.88411 0.86537 1.02911 1.22803 0.92551 0.95363 0.88747 0.92297 1.21450 0.86248 0.92920 0.99920 1.44072 1.00997 1.53341 1.33397 1.19197 0.87944 1.38974 0.92206 0.91363 1.25049 0.98556 1.00408 0.95695 1.70042 1.19240 1.53626 1.11827 0.86246 0.81925 0.77774 0.80635 1.21376 1.21498 1.20387 1.21445 0.98546 0.88429 0.90197 1.23311 0.82361 0.97929 1.00171 1.87790 1.28832 1.71668 1.42457 0.87561 0.92531 0.92522 0.83683 0.83968 0.81705 0.75134 0.90064 0.90601 0.91757 0.95200 0.93538 0.88829 0.95383 0.94098 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.12 16 2 O -0.27 -3.33 8.56 -40.57 -0.35 -3.68 16 3 C 0.14 1.60 6.71 -38.55 -0.26 1.34 16 4 C -0.18 -1.40 9.13 -39.15 -0.36 -1.75 16 5 C -0.11 -0.73 10.10 -39.36 -0.40 -1.13 16 6 C 0.06 0.50 11.17 -17.55 -0.20 0.30 16 7 N -0.42 -5.09 9.54 -9.71 -0.09 -5.18 16 8 C 0.05 0.67 6.76 -82.89 -0.56 0.11 16 9 C 0.57 9.26 7.80 -12.33 -0.10 9.17 16 10 O -0.52 -9.84 15.14 -16.63 -0.25 -10.09 16 11 N -0.70 -10.98 5.44 -61.25 -0.33 -11.32 16 12 C 0.13 2.14 5.37 -4.04 -0.02 2.12 16 13 C 0.07 1.20 2.86 -26.58 -0.08 1.12 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.12 2.61 6.02 -3.53 -0.02 2.59 16 16 N -0.59 -15.12 3.05 -171.82 -0.52 -15.64 16 17 C -0.25 -6.98 9.65 -15.06 -0.15 -7.12 16 18 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 19 C 0.00 0.04 4.95 -17.43 -0.09 -0.05 16 20 N -0.90 -26.22 11.15 55.49 0.62 -25.60 16 21 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.14 3.38 5.44 -3.53 -0.02 3.36 16 26 C 0.04 0.79 6.98 37.31 0.26 1.05 16 27 O -0.39 -7.62 10.14 -35.23 -0.36 -7.97 16 28 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.27 7.70 -51.93 -0.40 -0.13 16 30 H 0.06 0.28 7.70 -51.93 -0.40 -0.12 16 31 H 0.15 0.69 6.46 -52.49 -0.34 0.35 16 32 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.41 6.18 7.68 -40.82 -0.31 5.86 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -34.35 357.78 -7.87 -42.22 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.96 Total: 3.09 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -0.98 Total: 12.21 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.33 Total: -57.74 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.96 Total: -21.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.35 -7.87 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035584345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.662 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds