Wall clock time and date at job start Tue Mar 31 2020 13:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35640 * 117.00000 * 2 1 4 4 C 1.39342 * 120.54091 * 0.02562 * 3 2 1 5 5 C 1.38308 * 118.43903 * 179.97438 * 4 3 2 6 6 C 1.38769 * 119.44560 * 0.02562 * 5 4 3 7 7 N 1.31382 * 121.06421 * 359.97438 * 6 5 4 8 8 C 1.32851 * 121.69659 * 0.02562 * 7 6 5 9 9 C 1.47829 * 119.78309 * 180.27378 * 8 7 6 10 10 O 1.21553 * 120.00182 * 179.71785 * 9 8 7 11 11 N 1.34781 * 119.99957 * 359.72273 * 9 8 7 12 12 C 1.46507 * 119.99998 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46624 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.51667 * 60.00076 * 13 12 11 15 15 C 1.53300 * 109.50655 * 180.10289 * 13 12 11 16 16 N 1.47153 * 108.38145 * 172.22597 * 15 13 12 17 17 C 1.36939 * 120.98173 * 129.48750 * 16 15 13 18 18 H 1.07994 * 119.99819 * 333.60179 * 17 16 15 19 19 C 1.38813 * 120.00019 * 153.60984 * 17 16 15 20 20 N 1.31622 * 119.99792 * 343.16038 * 19 17 16 21 21 Si 1.86801 * 120.00020 * 163.16656 * 19 17 16 22 22 H 1.48498 * 109.47164 * 94.42946 * 21 19 17 23 23 H 1.48509 * 109.46818 * 214.42805 * 21 19 17 24 24 H 1.48495 * 109.47117 * 334.42662 * 21 19 17 25 25 C 1.47157 * 118.03790 * 309.45759 * 16 15 13 26 26 C 1.53298 * 108.37970 * 50.53756 * 25 16 15 27 27 O 1.42951 * 109.26805 * 307.72513 * 26 25 16 28 28 H 1.08996 * 109.47370 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46934 * 300.00257 * 1 2 3 30 30 H 1.09002 * 109.46989 * 59.99867 * 1 2 3 31 31 H 1.07994 * 120.78270 * 359.95532 * 4 3 2 32 32 H 1.07994 * 120.28073 * 179.97438 * 5 4 3 33 33 H 1.07993 * 119.47003 * 179.97438 * 6 5 4 34 34 H 0.96994 * 119.99708 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.46760 * 299.99624 * 12 11 9 36 36 H 1.08999 * 109.46992 * 59.99472 * 12 11 9 37 37 H 1.09003 * 109.67995 * 291.94445 * 15 13 12 38 38 H 1.08995 * 109.68306 * 52.50186 * 15 13 12 39 39 H 0.97001 * 119.99523 * 180.02562 * 20 19 17 40 40 H 1.08995 * 109.68109 * 170.25736 * 25 16 15 41 41 H 1.09004 * 109.68002 * 290.78077 * 25 16 15 42 42 H 1.09000 * 109.51251 * 67.62369 * 26 25 16 43 43 H 1.08998 * 109.51185 * 187.72287 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3843 0.0005 5 6 1.9697 3.5928 0.0011 6 6 3.3574 3.6011 0.0005 7 7 4.0420 2.4798 0.0000 8 6 3.4411 1.2950 -0.0005 9 6 4.2531 0.0597 0.0050 10 8 3.7074 -1.0264 0.0098 11 7 5.5987 0.1378 0.0049 12 6 6.4035 -1.0864 0.0099 13 6 7.8889 -0.7200 0.0080 14 1 8.1197 -0.1304 0.8953 15 6 8.7320 -2.0004 0.0106 16 7 10.1426 -1.6276 -0.1801 17 6 11.1161 -2.0993 0.6595 18 1 10.8671 -2.3764 1.6732 19 6 12.4230 -2.2212 0.2078 20 7 12.6768 -2.2086 -1.0837 21 14 13.8216 -2.4032 1.4327 22 1 14.1191 -3.8441 1.6338 23 1 15.0301 -1.7165 0.9098 24 1 13.4274 -1.7936 2.7281 25 6 10.4764 -0.7333 -1.3001 26 6 9.5483 0.4852 -1.2389 27 8 8.1915 0.0415 -1.1634 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.2175 2.3527 0.0002 32 1 1.4197 4.5222 0.0011 33 1 3.8830 4.5445 0.0005 34 1 6.0341 1.0045 0.0008 35 1 6.1736 -1.6687 0.9021 36 1 6.1738 -1.6758 -0.8778 37 1 8.6141 -2.5156 0.9639 38 1 8.4115 -2.6526 -0.8018 39 1 13.5900 -2.2941 -1.3994 40 1 11.5136 -0.4095 -1.2147 41 1 10.3322 -1.2583 -2.2445 42 1 9.7857 1.0797 -0.3567 43 1 9.6845 1.0919 -2.1341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035584345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:43 Heat of formation + Delta-G solvation = -71.948075 kcal Electronic energy + Delta-G solvation = -26791.688947 eV Core-core repulsion = 22837.652929 eV Total energy + Delta-G solvation = -3954.036018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93830 -40.51050 -39.72937 -39.15188 -36.50647 -35.73810 -33.62197 -33.24683 -32.28402 -31.73369 -29.28868 -28.35073 -27.37455 -25.48122 -24.88644 -23.84724 -23.30604 -21.90102 -21.32817 -19.46195 -18.89082 -18.67007 -18.14926 -17.52769 -17.03735 -16.92611 -16.77340 -16.32324 -16.14852 -15.87468 -15.50550 -15.39203 -15.17882 -15.00917 -14.71341 -14.59140 -14.46364 -14.26102 -13.60917 -13.43106 -13.21891 -13.00937 -12.69359 -12.50710 -12.44188 -12.39893 -12.19232 -12.08017 -11.87928 -11.39829 -11.26785 -10.82561 -10.80823 -10.64098 -10.53327 -10.13546 -9.48806 -8.76060 -7.91589 -5.39113 -0.35588 0.23757 1.46618 1.47696 1.58402 1.75592 2.05039 2.21761 2.48282 2.76751 2.84409 3.21926 3.24052 3.48288 3.60268 3.77188 3.97015 4.01549 4.05235 4.19366 4.25782 4.30512 4.36597 4.45647 4.50719 4.51227 4.61435 4.71277 4.71831 4.76241 4.88456 4.91925 5.02331 5.04879 5.23310 5.38139 5.43751 5.54704 5.60526 6.22178 6.25235 6.32568 6.45263 6.82914 7.05538 7.19462 7.73295 8.27606 9.14805 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027563 B = 0.002461 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.622656 B =11373.770225 C =11857.386941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.123 3.877 4 C -0.171 4.171 5 C -0.086 4.086 6 C 0.052 3.948 7 N -0.442 5.442 8 C 0.003 3.997 9 C 0.563 3.437 10 O -0.560 6.560 11 N -0.699 5.699 12 C 0.141 3.859 13 C 0.080 3.920 14 H 0.067 0.933 15 C 0.118 3.882 16 N -0.613 5.613 17 C -0.267 4.267 18 H 0.073 0.927 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.973 3.027 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.267 1.267 25 C 0.144 3.856 26 C 0.054 3.946 27 O -0.390 6.390 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.196 0.804 34 H 0.416 0.584 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.019 0.981 39 H 0.252 0.748 40 H 0.069 0.931 41 H -0.001 1.001 42 H 0.050 0.950 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.117 15.520 2.900 30.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.072 3.928 4 C -0.197 4.197 5 C -0.106 4.106 6 C -0.110 4.110 7 N -0.154 5.154 8 C -0.134 4.134 9 C 0.350 3.650 10 O -0.438 6.438 11 N -0.350 5.350 12 C 0.016 3.984 13 C 0.021 3.979 14 H 0.085 0.915 15 C -0.008 4.008 16 N -0.337 5.337 17 C -0.397 4.397 18 H 0.090 0.910 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.800 3.200 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.192 1.192 25 C 0.018 3.982 26 C -0.024 4.024 27 O -0.310 6.310 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.197 0.803 32 H 0.207 0.793 33 H 0.212 0.788 34 H 0.253 0.747 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.017 0.983 42 H 0.069 0.931 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -25.475 14.482 2.699 29.428 hybrid contribution 0.550 -0.265 0.310 0.685 sum -24.924 14.217 3.009 28.852 Atomic orbital electron populations 1.23524 0.76118 1.05845 1.03017 1.86383 1.23612 1.25575 1.86460 1.20277 0.92018 0.86970 0.93499 1.22183 1.02633 0.90696 1.04218 1.22747 0.95167 0.99743 0.92901 1.23415 0.92784 0.96316 0.98496 1.67560 1.41059 0.97814 1.08966 1.20388 0.89335 0.92471 1.11169 1.18105 0.82322 0.88062 0.76560 1.90782 1.72380 1.29182 1.51469 1.45668 1.05326 1.10644 1.73382 1.21260 0.87278 0.87028 1.02794 1.22637 0.93026 0.93615 0.88656 0.91494 1.21587 0.84833 0.94485 0.99928 1.44353 1.02207 1.53889 1.33299 1.19559 0.88789 1.38563 0.92758 0.90967 1.25857 1.00858 1.00591 0.97324 1.70200 1.19405 1.54970 1.13634 0.85183 0.78572 0.77480 0.78717 1.21315 1.21615 1.19207 1.21311 0.98426 0.89755 0.88674 1.23169 0.81276 0.95946 1.02001 1.87805 1.28466 1.71617 1.43074 0.87138 0.90469 0.90588 0.80250 0.79310 0.78752 0.74703 0.89146 0.91881 0.90805 0.96352 0.93895 0.91289 0.98289 0.93124 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.83 113.37 1.11 1.22 16 2 O -0.31 -7.57 8.56 -68.56 -0.59 -8.16 16 3 C 0.12 2.79 6.71 22.94 0.15 2.94 16 4 C -0.17 -2.10 9.13 22.55 0.21 -1.89 16 5 C -0.09 -0.75 10.10 22.41 0.23 -0.53 16 6 C 0.05 0.73 11.17 84.89 0.95 1.68 16 7 N -0.44 -10.28 9.54 -184.63 -1.76 -12.04 16 8 C 0.00 0.07 6.76 41.93 0.28 0.36 16 9 C 0.56 19.01 7.80 86.78 0.68 19.69 16 10 O -0.56 -22.09 15.14 17.11 0.26 -21.83 16 11 N -0.70 -22.26 5.44 -465.98 -2.53 -24.80 16 12 C 0.14 4.69 5.37 86.38 0.46 5.15 16 13 C 0.08 2.94 2.86 30.69 0.09 3.03 16 14 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.12 5.13 6.02 86.36 0.52 5.65 16 16 N -0.61 -31.76 3.05 -697.52 -2.13 -33.89 16 17 C -0.27 -14.84 9.65 84.03 0.81 -14.03 16 18 H 0.07 3.87 7.88 -2.91 -0.02 3.84 16 19 C -0.05 -2.86 4.95 84.86 0.42 -2.44 16 20 N -0.94 -55.78 11.15 21.65 0.24 -55.54 16 21 Si 0.97 44.81 29.59 68.60 2.03 46.84 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.14 7.15 5.44 86.35 0.47 7.62 16 26 C 0.05 2.09 6.98 72.08 0.50 2.60 16 27 O -0.39 -15.16 10.14 -148.98 -1.51 -16.67 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 0.55 7.70 -2.39 -0.02 0.53 16 30 H 0.08 0.56 7.70 -2.39 -0.02 0.54 16 31 H 0.18 0.85 6.46 -2.91 -0.02 0.83 16 32 H 0.19 -0.09 8.06 -2.91 -0.02 -0.11 16 33 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.42 12.49 7.68 -92.71 -0.71 11.78 16 35 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 3.01 7.96 -2.39 -0.02 2.99 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.07 3.75 6.15 -2.39 -0.01 3.74 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 Total: -1.00 -78.26 357.78 1.22 -77.04 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.32 Total: 18.01 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 6.89 Total: 31.05 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.18 Total: -126.27 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.84 Total: -46.66 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -78.26 1.22 -77.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035584345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.090 kcal (2) G-P(sol) polarization free energy of solvation -78.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds