Wall clock time and date at job start Tue Mar 31 2020 13:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35728 * 116.99564 * 2 1 4 4 C 1.41860 * 126.78247 * 180.02562 * 3 2 1 5 5 C 1.36660 * 103.81062 * 180.02562 * 4 3 2 6 6 C 1.47546 * 126.87985 * 179.97438 * 5 4 3 7 7 O 1.21580 * 119.99704 * 7.11898 * 6 5 4 8 8 N 1.34773 * 120.00018 * 187.12427 * 6 5 4 9 9 C 1.46895 * 120.46174 * 186.31652 * 8 6 5 10 10 C 1.53354 * 108.74267 * 124.34469 * 9 8 6 11 11 C 1.52552 * 109.12699 * 52.25966 * 10 9 8 12 12 C 1.52964 * 114.06396 * 75.53707 * 11 10 9 13 13 N 1.47168 * 87.85424 * 139.44192 * 12 11 10 14 14 C 1.36929 * 136.00002 * 153.08140 * 13 12 11 15 15 H 1.07996 * 120.00240 * 354.89171 * 14 13 12 16 16 C 1.38820 * 119.99913 * 174.89271 * 14 13 12 17 17 N 1.31616 * 119.99641 * 354.90359 * 16 14 13 18 18 Si 1.86797 * 120.00116 * 174.90750 * 16 14 13 19 19 H 1.48499 * 109.46988 * 94.99527 * 18 16 14 20 20 H 1.48501 * 109.47273 * 215.00009 * 18 16 14 21 21 H 1.48509 * 109.46998 * 334.99939 * 18 16 14 22 22 C 1.47173 * 87.99609 * 333.34029 * 13 12 11 23 23 C 1.52563 * 113.43178 * 302.66961 * 11 10 9 24 24 C 1.46888 * 120.46468 * 6.29495 * 8 6 5 25 25 O 1.34661 * 106.24533 * 0.21946 * 5 4 3 26 26 N 1.20884 * 111.62772 * 359.59698 * 25 5 4 27 27 H 1.09002 * 109.47024 * 59.99852 * 1 2 3 28 28 H 1.08997 * 109.46543 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46761 * 299.99551 * 1 2 3 30 30 H 1.07997 * 128.09317 * 359.97438 * 4 3 2 31 31 H 1.08996 * 109.59485 * 4.56194 * 9 8 6 32 32 H 1.09006 * 109.71042 * 244.19182 * 9 8 6 33 33 H 1.08996 * 109.52615 * 292.36426 * 10 9 8 34 34 H 1.09002 * 109.58884 * 172.18872 * 10 9 8 35 35 H 1.09003 * 113.48911 * 24.70213 * 12 11 10 36 36 H 1.08995 * 113.49430 * 254.18523 * 12 11 10 37 37 H 0.97005 * 119.99520 * 179.97438 * 17 16 14 38 38 H 1.09005 * 113.48642 * 141.41417 * 22 13 12 39 39 H 1.08993 * 113.48627 * 271.91589 * 22 13 12 40 40 H 1.09003 * 109.52489 * 177.21454 * 23 11 10 41 41 H 1.08992 * 109.52643 * 297.42297 * 23 11 10 42 42 H 1.09000 * 109.58575 * 355.42739 * 24 8 6 43 43 H 1.08993 * 109.59194 * 115.86376 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 0.0003 6 6 4.7785 3.6142 0.0008 7 8 5.8559 3.0664 -0.1301 8 7 4.7162 4.9526 0.1464 9 6 5.9267 5.7736 0.0105 10 6 5.6801 6.8415 -1.0621 11 6 4.3908 7.5890 -0.7361 12 6 4.5245 8.5922 0.4109 13 7 3.6800 9.5116 -0.3684 14 6 2.8191 10.5380 -0.0846 15 1 2.5796 10.7738 0.9417 16 6 2.2542 11.2754 -1.1162 17 7 2.6219 11.0549 -2.3606 18 14 0.9724 12.5805 -0.7383 19 1 1.6330 13.9058 -0.6279 20 1 -0.0330 12.6179 -1.8306 21 1 0.2980 12.2552 0.5443 22 6 4.1615 8.8397 -1.5860 23 6 3.1722 6.6777 -0.6268 24 6 3.4369 5.6108 0.4426 25 8 2.2758 3.2803 0.0062 26 7 1.4685 2.3805 0.0009 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.2442 0.7262 -0.0006 31 1 6.7645 5.1431 -0.2872 32 1 6.1523 6.2561 0.9616 33 1 5.5876 6.3637 -2.0374 34 1 6.5141 7.5432 -1.0778 35 1 5.5425 8.9542 0.5550 36 1 4.0603 8.2564 1.3381 37 1 2.2268 11.5699 -3.0815 38 1 3.3906 8.7131 -2.3461 39 1 5.0809 9.2688 -1.9842 40 1 2.3002 7.2677 -0.3448 41 1 2.9915 6.1943 -1.5868 42 1 2.6347 4.8730 0.4292 43 1 3.4869 6.0818 1.4242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035689569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:29 Heat of formation + Delta-G solvation = 74.544404 kcal Electronic energy + Delta-G solvation = -27603.249604 eV Core-core repulsion = 23655.565977 eV Total energy + Delta-G solvation = -3947.683627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.23771 -40.43403 -39.17335 -38.89671 -36.04084 -33.48938 -32.84435 -32.19771 -30.84544 -30.44321 -27.99958 -27.06802 -25.13880 -24.57660 -23.77939 -23.16787 -22.76998 -21.37586 -20.55411 -18.78037 -18.21071 -17.31921 -17.25125 -16.69117 -16.32772 -16.10038 -15.83230 -15.25687 -15.02010 -14.86969 -14.65114 -14.23829 -13.81978 -13.79875 -13.57236 -13.23680 -12.63781 -12.44606 -12.28573 -12.20635 -12.18289 -11.76257 -11.66612 -11.14597 -11.01519 -10.90168 -10.85353 -10.54941 -10.33618 -10.14393 -10.11216 -9.76551 -9.65675 -9.60538 -9.24254 -8.78238 -8.59272 -6.87375 -5.78527 -3.09031 0.53327 1.84659 2.29988 2.35930 2.80452 3.08420 3.38223 3.43552 3.45620 3.80287 4.27558 4.45374 4.53023 4.73809 4.81018 4.90363 4.98186 5.04503 5.11556 5.14404 5.27099 5.35419 5.39941 5.43260 5.59093 5.66656 5.79742 5.85706 5.92094 6.08408 6.23996 6.31536 6.41930 6.55170 6.58910 6.61195 6.76613 6.79119 7.15028 7.20705 7.33516 7.53831 7.68830 7.91775 7.96601 9.03352 9.70072 10.65319 11.39991 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.003204 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.279495 B = 8736.948310 C =10049.748616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.204 3.796 4 C -0.156 4.156 5 C -0.051 4.051 6 C 0.601 3.399 7 O -0.519 6.519 8 N -0.587 5.587 9 C 0.116 3.884 10 C -0.115 4.115 11 C -0.118 4.118 12 C 0.126 3.874 13 N -0.608 5.608 14 C -0.217 4.217 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.173 3.827 23 C -0.093 4.093 24 C 0.094 3.906 25 O 0.120 5.880 26 N -0.392 5.392 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.189 0.811 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.253 0.747 38 H 0.061 0.939 39 H 0.028 0.972 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -19.877 4.895 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.189 6.189 3 C 0.007 3.993 4 C -0.179 4.179 5 C -0.117 4.117 6 C 0.386 3.614 7 O -0.396 6.396 8 N -0.318 5.318 9 C -0.006 4.006 10 C -0.153 4.153 11 C -0.120 4.120 12 C 0.000 4.000 13 N -0.333 5.333 14 C -0.345 4.345 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.566 5.566 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.047 3.953 23 C -0.131 4.131 24 C -0.028 4.028 25 O 0.057 5.943 26 N -0.118 5.118 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.207 0.793 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.101 -19.744 4.760 20.310 hybrid contribution -0.315 0.568 0.070 0.654 sum -0.214 -19.176 4.831 19.776 Atomic orbital electron populations 1.23110 0.76500 1.04233 1.02623 1.86211 1.22825 1.20432 1.89399 1.21864 0.90571 0.85836 1.01026 1.22152 0.94445 0.94848 1.06454 1.24092 0.87116 0.93751 1.06758 1.16616 0.85059 0.81773 0.77985 1.90852 1.26873 1.70823 1.51037 1.48071 1.11271 1.04881 1.67598 1.21779 0.86034 0.92612 1.00130 1.21754 0.98415 0.97014 0.98154 1.22124 0.93641 0.94778 1.01437 1.22408 0.94223 0.89249 0.94116 1.45632 1.46880 1.38084 1.02710 1.18922 1.16409 1.06481 0.92664 0.90224 1.24796 1.00751 0.99422 0.95422 1.69844 1.45175 1.43304 0.98238 0.86138 0.81086 0.81543 0.77219 1.21717 1.21647 1.20537 1.21930 0.96835 0.85334 0.91169 1.21414 0.98624 0.95200 0.97875 1.22385 0.83788 0.96509 1.00110 1.85131 1.11982 1.28680 1.68523 1.74010 1.16729 0.96831 1.24244 0.92014 0.87525 0.92050 0.79341 0.89023 0.90666 0.91587 0.90272 0.95178 0.94478 0.93691 0.92078 0.95457 0.88976 0.91828 0.88500 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.30 16 2 O -0.28 -2.93 10.57 -18.89 -0.20 -3.13 16 3 C 0.20 2.40 8.00 -16.72 -0.13 2.26 16 4 C -0.16 -1.74 10.98 -38.77 -0.43 -2.17 16 5 C -0.05 -0.63 6.94 -36.36 -0.25 -0.88 16 6 C 0.60 7.99 7.68 -12.47 -0.10 7.90 16 7 O -0.52 -7.93 16.34 5.29 0.09 -7.84 16 8 N -0.59 -7.48 2.94 -173.86 -0.51 -7.99 16 9 C 0.12 1.41 6.33 -3.64 -0.02 1.39 16 10 C -0.11 -1.56 5.30 -26.78 -0.14 -1.70 16 11 C -0.12 -1.99 0.84 -155.02 -0.13 -2.12 16 12 C 0.13 2.39 7.63 -8.20 -0.06 2.33 16 13 N -0.61 -14.86 3.54 -184.63 -0.65 -15.51 16 14 C -0.22 -5.92 10.74 -15.06 -0.16 -6.08 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -26.90 11.75 55.49 0.65 -26.24 16 18 Si 0.91 21.80 29.56 -169.99 -5.02 16.78 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.17 3.86 6.39 -8.21 -0.05 3.80 16 23 C -0.09 -1.44 5.27 -26.77 -0.14 -1.59 16 24 C 0.09 1.20 6.22 -3.65 -0.02 1.17 16 25 O 0.12 1.50 7.80 15.50 0.12 1.62 16 26 N -0.39 -4.97 11.50 30.47 0.35 -4.62 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 36 H 0.04 0.67 7.53 -51.93 -0.39 0.27 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.06 1.52 7.48 -51.93 -0.39 1.14 16 39 H 0.03 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.09 1.65 7.95 -51.93 -0.41 1.24 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.17 3.86 -54.38 -0.21 0.96 16 43 H 0.08 0.97 7.60 -51.93 -0.39 0.57 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -31.82 352.58 -6.44 -38.27 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.92 Total: -1.97 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.65 Total: 5.33 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.16 Total: -54.37 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.01 Total: -9.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.82 -6.44 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035689569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.812 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds