Wall clock time and date at job start Tue Mar 31 2020 13:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35728 * 116.99564 * 2 1 4 4 C 1.41860 * 126.78247 * 180.02562 * 3 2 1 5 5 C 1.36660 * 103.81062 * 180.02562 * 4 3 2 6 6 C 1.47546 * 126.87985 * 179.97438 * 5 4 3 7 7 O 1.21580 * 119.99704 * 7.11898 * 6 5 4 8 8 N 1.34773 * 120.00018 * 187.12427 * 6 5 4 9 9 C 1.46895 * 120.46174 * 186.31652 * 8 6 5 10 10 C 1.53354 * 108.74267 * 124.34469 * 9 8 6 11 11 C 1.52552 * 109.12699 * 52.25966 * 10 9 8 12 12 C 1.52964 * 114.06396 * 75.53707 * 11 10 9 13 13 N 1.47168 * 87.85424 * 139.44192 * 12 11 10 14 14 C 1.36929 * 136.00002 * 153.08140 * 13 12 11 15 15 H 1.07996 * 120.00240 * 354.89171 * 14 13 12 16 16 C 1.38820 * 119.99913 * 174.89271 * 14 13 12 17 17 N 1.31616 * 119.99641 * 354.90359 * 16 14 13 18 18 Si 1.86797 * 120.00116 * 174.90750 * 16 14 13 19 19 H 1.48499 * 109.46988 * 94.99527 * 18 16 14 20 20 H 1.48501 * 109.47273 * 215.00009 * 18 16 14 21 21 H 1.48509 * 109.46998 * 334.99939 * 18 16 14 22 22 C 1.47173 * 87.99609 * 333.34029 * 13 12 11 23 23 C 1.52563 * 113.43178 * 302.66961 * 11 10 9 24 24 C 1.46888 * 120.46468 * 6.29495 * 8 6 5 25 25 O 1.34661 * 106.24533 * 0.21946 * 5 4 3 26 26 N 1.20884 * 111.62772 * 359.59698 * 25 5 4 27 27 H 1.09002 * 109.47024 * 59.99852 * 1 2 3 28 28 H 1.08997 * 109.46543 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46761 * 299.99551 * 1 2 3 30 30 H 1.07997 * 128.09317 * 359.97438 * 4 3 2 31 31 H 1.08996 * 109.59485 * 4.56194 * 9 8 6 32 32 H 1.09006 * 109.71042 * 244.19182 * 9 8 6 33 33 H 1.08996 * 109.52615 * 292.36426 * 10 9 8 34 34 H 1.09002 * 109.58884 * 172.18872 * 10 9 8 35 35 H 1.09003 * 113.48911 * 24.70213 * 12 11 10 36 36 H 1.08995 * 113.49430 * 254.18523 * 12 11 10 37 37 H 0.97005 * 119.99520 * 179.97438 * 17 16 14 38 38 H 1.09005 * 113.48642 * 141.41417 * 22 13 12 39 39 H 1.08993 * 113.48627 * 271.91589 * 22 13 12 40 40 H 1.09003 * 109.52489 * 177.21454 * 23 11 10 41 41 H 1.08992 * 109.52643 * 297.42297 * 23 11 10 42 42 H 1.09000 * 109.58575 * 355.42739 * 24 8 6 43 43 H 1.08993 * 109.59194 * 115.86376 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 0.0003 6 6 4.7785 3.6142 0.0008 7 8 5.8559 3.0664 -0.1301 8 7 4.7162 4.9526 0.1464 9 6 5.9267 5.7736 0.0105 10 6 5.6801 6.8415 -1.0621 11 6 4.3908 7.5890 -0.7361 12 6 4.5245 8.5922 0.4109 13 7 3.6800 9.5116 -0.3684 14 6 2.8191 10.5380 -0.0846 15 1 2.5796 10.7738 0.9417 16 6 2.2542 11.2754 -1.1162 17 7 2.6219 11.0549 -2.3606 18 14 0.9724 12.5805 -0.7383 19 1 1.6330 13.9058 -0.6279 20 1 -0.0330 12.6179 -1.8306 21 1 0.2980 12.2552 0.5443 22 6 4.1615 8.8397 -1.5860 23 6 3.1722 6.6777 -0.6268 24 6 3.4369 5.6108 0.4426 25 8 2.2758 3.2803 0.0062 26 7 1.4685 2.3805 0.0009 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.2442 0.7262 -0.0006 31 1 6.7645 5.1431 -0.2872 32 1 6.1523 6.2561 0.9616 33 1 5.5876 6.3637 -2.0374 34 1 6.5141 7.5432 -1.0778 35 1 5.5425 8.9542 0.5550 36 1 4.0603 8.2564 1.3381 37 1 2.2268 11.5699 -3.0815 38 1 3.3906 8.7131 -2.3461 39 1 5.0809 9.2688 -1.9842 40 1 2.3002 7.2677 -0.3448 41 1 2.9915 6.1943 -1.5868 42 1 2.6347 4.8730 0.4292 43 1 3.4869 6.0818 1.4242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035689569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:28 Heat of formation + Delta-G solvation = 52.423841 kcal Electronic energy + Delta-G solvation = -27604.208824 eV Core-core repulsion = 23655.565977 eV Total energy + Delta-G solvation = -3948.642847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.15138 -41.65171 -40.25849 -39.93312 -37.30456 -34.53543 -34.34162 -33.45800 -31.95194 -31.91542 -28.87204 -28.56414 -26.65065 -25.94221 -24.82666 -24.24530 -24.08821 -22.70420 -21.67612 -19.88611 -19.15536 -18.67919 -18.43101 -18.17501 -17.41817 -17.01180 -16.83535 -16.59630 -16.24013 -16.07753 -15.87487 -15.61052 -15.20280 -15.00287 -14.76677 -14.52730 -13.95278 -13.70784 -13.62113 -13.17953 -13.08403 -12.92354 -12.89229 -12.77847 -12.59921 -12.54270 -12.15355 -12.10770 -11.74364 -11.63962 -11.31777 -11.13094 -11.02771 -10.88754 -10.76123 -10.46552 -9.73158 -8.85921 -7.88688 -5.18995 -0.40658 0.95774 1.34881 1.46966 1.47916 1.55462 1.57194 1.80753 2.13004 2.50049 2.93882 3.32540 3.35221 3.49477 3.60480 3.65735 3.93523 4.01156 4.10234 4.15476 4.25288 4.28285 4.33350 4.42130 4.55521 4.64804 4.65615 4.69522 4.82838 4.85928 4.89684 4.97193 5.10644 5.17992 5.23768 5.30157 5.35504 5.43110 5.59809 5.76611 5.83604 5.96583 6.10289 6.68761 6.94813 6.97732 7.64684 8.67394 9.30322 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.003204 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.279495 B = 8736.948310 C =10049.748616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.288 6.288 3 C 0.203 3.797 4 C -0.147 4.147 5 C -0.061 4.061 6 C 0.607 3.393 7 O -0.538 6.538 8 N -0.586 5.586 9 C 0.120 3.880 10 C -0.107 4.107 11 C -0.088 4.088 12 C 0.129 3.871 13 N -0.638 5.638 14 C -0.222 4.222 15 H 0.085 0.915 16 C -0.069 4.069 17 N -0.955 5.955 18 Si 0.974 3.026 19 H -0.290 1.290 20 H -0.297 1.297 21 H -0.265 1.265 22 C 0.168 3.832 23 C -0.089 4.089 24 C 0.107 3.893 25 O 0.112 5.888 26 N -0.405 5.405 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.061 0.939 30 H 0.208 0.792 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.246 0.754 38 H 0.023 0.977 39 H 0.013 0.987 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 -21.595 6.504 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.195 6.195 3 C 0.005 3.995 4 C -0.169 4.169 5 C -0.127 4.127 6 C 0.392 3.608 7 O -0.416 6.416 8 N -0.317 5.317 9 C -0.001 4.001 10 C -0.146 4.146 11 C -0.090 4.090 12 C 0.004 3.996 13 N -0.364 5.364 14 C -0.350 4.350 15 H 0.103 0.897 16 C -0.262 4.262 17 N -0.604 5.604 18 Si 0.803 3.197 19 H -0.217 1.217 20 H -0.223 1.223 21 H -0.190 1.190 22 C 0.042 3.958 23 C -0.128 4.128 24 C -0.015 4.015 25 O 0.050 5.950 26 N -0.133 5.133 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.080 0.920 30 H 0.225 0.775 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.031 0.969 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.394 -21.483 6.407 22.422 hybrid contribution -0.417 1.027 -0.429 1.189 sum -0.024 -20.456 5.978 21.312 Atomic orbital electron populations 1.23380 0.74897 1.06297 1.02465 1.86224 1.24428 1.19697 1.89134 1.22050 0.90928 0.86047 1.00428 1.22435 0.94748 0.94781 1.04959 1.23977 0.86814 0.94068 1.07797 1.16623 0.85040 0.81752 0.77349 1.90844 1.27657 1.71159 1.51973 1.48084 1.11318 1.04908 1.67415 1.21805 0.85987 0.92068 1.00220 1.21700 0.96629 0.97372 0.98924 1.21877 0.95807 0.93318 0.97964 1.22571 0.93900 0.88182 0.94929 1.45981 1.47567 1.37998 1.04824 1.19327 1.16344 1.06459 0.92881 0.89699 1.25600 1.03194 1.02005 0.95369 1.70031 1.46742 1.44610 0.98999 0.85116 0.78534 0.78825 0.77218 1.21718 1.22346 1.18974 1.21920 0.94868 0.88370 0.90643 1.21323 0.96997 0.95475 0.98963 1.22254 0.84234 0.95754 0.99287 1.85087 1.12063 1.28828 1.68972 1.73994 1.16994 0.97310 1.24976 0.92312 0.84430 0.92046 0.77498 0.88207 0.88944 0.91528 0.89319 0.93874 0.92818 0.94507 0.95829 0.96873 0.91617 0.92009 0.87641 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.73 113.37 1.22 1.52 16 2 O -0.29 -5.46 10.57 -90.51 -0.96 -6.41 16 3 C 0.20 4.42 8.00 85.78 0.69 5.11 16 4 C -0.15 -2.98 10.98 22.80 0.25 -2.73 16 5 C -0.06 -1.38 6.94 24.36 0.17 -1.21 16 6 C 0.61 14.81 7.68 86.70 0.67 15.48 16 7 O -0.54 -15.21 16.34 -3.97 -0.06 -15.27 16 8 N -0.59 -13.53 2.94 -822.22 -2.42 -15.95 16 9 C 0.12 2.58 6.33 86.42 0.55 3.13 16 10 C -0.11 -2.73 5.30 30.56 0.16 -2.57 16 11 C -0.09 -2.90 0.84 -52.51 -0.04 -2.95 16 12 C 0.13 4.71 7.63 83.32 0.64 5.34 16 13 N -0.64 -31.50 3.54 -738.06 -2.61 -34.11 16 14 C -0.22 -12.19 10.74 84.04 0.90 -11.29 16 15 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 17 N -0.95 -57.89 11.75 21.65 0.25 -57.64 16 18 Si 0.97 45.56 29.56 68.60 2.03 47.59 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 C 0.17 7.70 6.39 83.31 0.53 8.23 16 23 C -0.09 -2.73 5.27 30.57 0.16 -2.57 16 24 C 0.11 2.50 6.22 86.42 0.54 3.04 16 25 O 0.11 2.67 7.80 65.64 0.51 3.18 16 26 N -0.41 -9.76 11.50 -172.01 -1.98 -11.74 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.10 2.09 7.01 -2.39 -0.02 2.07 16 32 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 2.13 8.10 -2.39 -0.02 2.11 16 35 H 0.04 1.51 8.06 -2.39 -0.02 1.49 16 36 H 0.05 1.79 7.53 -2.39 -0.02 1.78 16 37 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 38 H 0.02 1.23 7.48 -2.38 -0.02 1.21 16 39 H 0.01 0.64 8.09 -2.39 -0.02 0.62 16 40 H 0.07 2.38 7.95 -2.39 -0.02 2.36 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.11 2.38 3.86 -41.25 -0.16 2.22 16 43 H 0.09 1.98 7.60 -2.39 -0.02 1.97 16 Total: -1.00 -69.80 352.58 2.53 -67.27 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.88 Total: 7.98 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 6.89 Total: 15.10 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -6.75 Total: -119.43 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.51 Total: -18.50 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.80 2.53 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035689569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.690 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds