Wall clock time and date at job start Tue Mar 31 2020 13:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35355 * 117.00442 * 2 1 4 4 N 1.30549 * 125.44885 * 179.97438 * 3 2 1 5 5 C 1.36330 * 108.38170 * 179.97438 * 4 3 2 6 6 C 1.47368 * 126.41081 * 179.97438 * 5 4 3 7 7 O 1.21625 * 119.99836 * 187.25880 * 6 5 4 8 8 N 1.34774 * 120.00191 * 7.25277 * 6 5 4 9 9 C 1.46882 * 120.46733 * 187.13276 * 8 6 5 10 10 C 1.52854 * 109.01864 * 235.49098 * 9 8 6 11 11 C 1.52676 * 109.18133 * 307.82057 * 10 9 8 12 12 C 1.53476 * 113.62558 * 188.99169 * 11 10 9 13 13 N 1.47669 * 85.99064 * 137.70931 * 12 11 10 14 14 C 1.36933 * 134.45917 * 155.70072 * 13 12 11 15 15 H 1.08000 * 120.00074 * 179.97438 * 14 13 12 16 16 C 1.38812 * 119.99898 * 359.97036 * 14 13 12 17 17 N 1.31618 * 120.00060 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99805 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47010 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46888 * 120.00194 * 18 16 14 21 21 H 1.48497 * 109.46939 * 239.99972 * 18 16 14 22 22 C 1.47671 * 91.08466 * 335.67867 * 13 12 11 23 23 C 1.52670 * 113.18350 * 57.45559 * 11 10 9 24 24 C 1.46885 * 120.46425 * 7.41879 * 8 6 5 25 25 C 1.35909 * 107.17411 * 0.02562 * 5 4 3 26 26 O 1.34206 * 125.44328 * 359.69729 * 3 2 1 27 27 H 1.08999 * 109.46993 * 59.99758 * 1 2 3 28 28 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47061 * 299.99889 * 1 2 3 30 30 H 1.08991 * 109.58970 * 355.32303 * 9 8 6 31 31 H 1.09008 * 109.58293 * 115.75604 * 9 8 6 32 32 H 1.09001 * 109.61001 * 187.84484 * 10 9 8 33 33 H 1.08994 * 109.44812 * 67.69940 * 10 9 8 34 34 H 1.09003 * 113.78905 * 251.97500 * 12 11 10 35 35 H 1.09000 * 113.79366 * 23.43811 * 12 11 10 36 36 H 0.97001 * 120.00081 * 179.97438 * 17 16 14 37 37 H 1.08995 * 113.79272 * 270.05082 * 22 13 12 38 38 H 1.08996 * 113.79214 * 138.57626 * 22 13 12 39 39 H 1.08993 * 109.53236 * 182.52304 * 23 11 10 40 40 H 1.09003 * 109.58868 * 62.33973 * 23 11 10 41 41 H 1.08999 * 109.58462 * 244.25172 * 24 8 6 42 42 H 1.09000 * 109.58945 * 4.68033 * 24 8 6 43 43 H 1.08009 * 126.45696 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 7 3.3349 1.3977 0.0005 5 6 3.5702 2.7405 -0.0003 6 6 4.8893 3.3975 0.0004 7 8 4.9677 4.6040 0.1327 8 7 6.0088 2.6614 -0.1454 9 6 7.3321 3.2798 0.0092 10 6 8.1525 3.0233 -1.2548 11 6 8.1408 1.5286 -1.5658 12 6 9.1094 1.1259 -2.6861 13 7 9.4497 -0.0314 -1.8344 14 6 9.9570 -1.2809 -2.0721 15 1 10.1194 -1.9631 -1.2506 16 6 10.2625 -1.6708 -3.3688 17 7 10.0649 -0.8394 -4.3698 18 14 10.9538 -3.3757 -3.6931 19 1 11.0799 -4.1112 -2.4092 20 1 10.0400 -4.1162 -4.5996 21 1 12.2906 -3.2550 -4.3284 22 6 9.0243 0.6989 -0.6235 23 6 6.7340 0.9620 -1.7404 24 6 5.9228 1.2308 -0.4673 25 6 2.3604 3.3599 -0.0007 26 8 1.4228 2.3958 -0.0058 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 7.2186 4.3535 0.1577 31 1 7.8421 2.8418 0.8674 32 1 9.1790 3.3549 -1.0983 33 1 7.7153 3.5724 -2.0887 34 1 8.6147 0.8550 -3.6188 35 1 9.9335 1.8252 -2.8274 36 1 10.2787 -1.1117 -5.2759 37 1 9.8229 1.2713 -0.1519 38 1 8.4616 0.0888 0.0831 39 1 6.7929 -0.1122 -1.9149 40 1 6.2490 1.4432 -2.5898 41 1 6.3313 0.6457 0.3567 42 1 4.8812 0.9554 -0.6326 43 1 2.1850 4.4257 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035760234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:39 Heat of formation + Delta-G solvation = 34.609502 kcal Electronic energy + Delta-G solvation = -27629.999216 eV Core-core repulsion = 23680.583881 eV Total energy + Delta-G solvation = -3949.415334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.73793 -40.17087 -39.16045 -38.54088 -35.74697 -35.17640 -32.42360 -31.09917 -30.33057 -30.10940 -27.83020 -26.89448 -25.09626 -24.64815 -23.29500 -22.94359 -22.39357 -21.16037 -20.20281 -18.66081 -17.85734 -17.72222 -16.79285 -16.64782 -16.62200 -15.81418 -15.56179 -15.53992 -14.92468 -14.79256 -14.52047 -13.89491 -13.76030 -13.61745 -13.42718 -13.08869 -12.71277 -12.63256 -12.30513 -12.10973 -11.99935 -11.56656 -11.31040 -11.16376 -10.99829 -10.80852 -10.76784 -10.68467 -10.29199 -10.18869 -9.63875 -9.54809 -9.40953 -9.24824 -8.97643 -8.70816 -8.31909 -6.77205 -5.68862 -3.00038 0.89064 1.61275 1.80805 2.44702 3.04063 3.23122 3.42996 3.48394 3.50834 4.18350 4.46027 4.52483 4.56148 4.63534 4.78568 4.97447 5.12072 5.18386 5.25767 5.35045 5.38398 5.48477 5.57337 5.62355 5.74910 5.89089 6.04284 6.07373 6.17432 6.28853 6.36399 6.44248 6.49977 6.69795 6.74204 6.79615 6.92943 6.96787 7.22928 7.33345 7.48391 7.55434 7.67461 8.07037 8.14288 9.13181 9.79223 10.70765 11.48213 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.003389 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.645405 B = 8260.864465 C = 9714.239483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.243 6.243 3 C 0.380 3.620 4 N -0.448 5.448 5 C -0.038 4.038 6 C 0.599 3.401 7 O -0.546 6.546 8 N -0.582 5.582 9 C 0.114 3.886 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.173 3.827 13 N -0.609 5.609 14 C -0.218 4.218 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.126 3.874 23 C -0.095 4.095 24 C 0.080 3.920 25 C -0.001 4.001 26 O -0.226 6.226 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.251 0.749 37 H 0.030 0.970 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.133 0.867 43 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.364 7.559 9.595 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.150 6.150 3 C 0.135 3.865 4 N -0.194 5.194 5 C -0.157 4.157 6 C 0.385 3.615 7 O -0.425 6.425 8 N -0.312 5.312 9 C -0.008 4.008 10 C -0.156 4.156 11 C -0.111 4.111 12 C 0.048 3.952 13 N -0.335 5.335 14 C -0.346 4.346 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.001 3.999 23 C -0.133 4.133 24 C -0.042 4.042 25 C -0.073 4.073 26 O -0.118 6.118 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.150 0.850 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -19.752 7.152 9.478 23.046 hybrid contribution -0.067 -0.500 -0.317 0.596 sum -19.820 6.652 9.160 22.825 Atomic orbital electron populations 1.23308 0.75146 1.05738 1.02934 1.86423 1.23641 1.15857 1.89085 1.23768 0.85871 0.79487 0.97360 1.71160 1.08622 1.15419 1.24179 1.21735 0.95913 0.88231 1.09790 1.16733 0.81942 0.85576 0.77222 1.90798 1.86349 1.12995 1.52405 1.47942 1.05252 1.11176 1.66876 1.21605 0.81623 0.99010 0.98553 1.21731 0.99737 0.97184 0.96927 1.22413 0.95662 0.92343 1.00714 1.22228 0.92037 0.86696 0.94260 1.45968 1.75501 1.10248 1.01794 1.19067 1.34894 0.87979 0.92657 0.90395 1.24749 1.02113 0.98146 0.95542 1.69834 1.53826 1.34657 0.98558 0.86096 0.78362 0.83856 0.77772 1.20535 1.21800 1.21901 1.22590 0.93812 0.92289 0.91257 1.21480 0.93300 1.02406 0.96094 1.22765 1.05088 0.78568 0.97737 1.24906 0.84835 0.93728 1.03820 1.84381 1.39572 1.15888 1.71932 0.91376 0.86251 0.91443 0.89393 0.91217 0.90696 0.91854 0.91070 0.95835 0.93854 0.95198 0.94114 0.89509 0.92497 0.91535 0.84986 0.74817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.73 101.05 1.08 1.19 16 2 O -0.24 -2.31 10.55 -40.99 -0.43 -2.74 16 3 C 0.38 4.25 8.98 52.22 0.47 4.72 16 4 N -0.45 -6.03 7.86 -11.71 -0.09 -6.12 16 5 C -0.04 -0.50 6.66 -82.99 -0.55 -1.05 16 6 C 0.60 9.03 7.67 -12.55 -0.10 8.94 16 7 O -0.55 -9.06 16.30 5.26 0.09 -8.98 16 8 N -0.58 -8.85 2.95 -174.24 -0.51 -9.37 16 9 C 0.11 1.65 6.29 -3.91 -0.02 1.62 16 10 C -0.12 -1.84 5.24 -26.97 -0.14 -1.98 16 11 C -0.11 -2.07 0.77 -154.42 -0.12 -2.19 16 12 C 0.17 4.12 6.64 -3.16 -0.02 4.10 16 13 N -0.61 -15.72 3.53 -179.76 -0.64 -16.36 16 14 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 17 N -0.92 -27.65 11.39 55.49 0.63 -27.02 16 18 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 C 0.13 2.61 7.73 -3.14 -0.02 2.59 16 23 C -0.09 -1.70 5.21 -26.73 -0.14 -1.84 16 24 C 0.08 1.25 6.00 -3.66 -0.02 1.23 16 25 C 0.00 -0.01 11.94 29.90 0.36 0.35 16 26 O -0.23 -2.15 10.20 -17.75 -0.18 -2.33 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 1.25 6.98 -51.93 -0.36 0.88 16 31 H 0.07 0.95 8.08 -51.92 -0.42 0.53 16 32 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.89 7.12 -51.93 -0.37 1.52 16 35 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.04 0.81 7.41 -51.93 -0.38 0.43 16 39 H 0.09 1.77 8.01 -51.93 -0.42 1.36 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.05 7.49 -51.93 -0.39 0.66 16 42 H 0.13 2.05 4.02 -63.53 -0.26 1.80 16 43 H 0.24 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -34.21 352.01 -6.28 -40.49 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.94 Total: -1.29 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 0.51 Total: 10.96 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.61 Total: -58.86 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.53 Total: -14.05 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.21 -6.28 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035760234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.102 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds