Wall clock time and date at job start Tue Mar 31 2020 13:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35355 * 117.00442 * 2 1 4 4 N 1.30549 * 125.44885 * 179.97438 * 3 2 1 5 5 C 1.36330 * 108.38170 * 179.97438 * 4 3 2 6 6 C 1.47368 * 126.41081 * 179.97438 * 5 4 3 7 7 O 1.21625 * 119.99836 * 187.25880 * 6 5 4 8 8 N 1.34774 * 120.00191 * 7.25277 * 6 5 4 9 9 C 1.46882 * 120.46733 * 187.13276 * 8 6 5 10 10 C 1.52854 * 109.01864 * 235.49098 * 9 8 6 11 11 C 1.52676 * 109.18133 * 307.82057 * 10 9 8 12 12 C 1.53476 * 113.62558 * 188.99169 * 11 10 9 13 13 N 1.47669 * 85.99064 * 137.70931 * 12 11 10 14 14 C 1.36933 * 134.45917 * 155.70072 * 13 12 11 15 15 H 1.08000 * 120.00074 * 179.97438 * 14 13 12 16 16 C 1.38812 * 119.99898 * 359.97036 * 14 13 12 17 17 N 1.31618 * 120.00060 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99805 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47010 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46888 * 120.00194 * 18 16 14 21 21 H 1.48497 * 109.46939 * 239.99972 * 18 16 14 22 22 C 1.47671 * 91.08466 * 335.67867 * 13 12 11 23 23 C 1.52670 * 113.18350 * 57.45559 * 11 10 9 24 24 C 1.46885 * 120.46425 * 7.41879 * 8 6 5 25 25 C 1.35909 * 107.17411 * 0.02562 * 5 4 3 26 26 O 1.34206 * 125.44328 * 359.69729 * 3 2 1 27 27 H 1.08999 * 109.46993 * 59.99758 * 1 2 3 28 28 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47061 * 299.99889 * 1 2 3 30 30 H 1.08991 * 109.58970 * 355.32303 * 9 8 6 31 31 H 1.09008 * 109.58293 * 115.75604 * 9 8 6 32 32 H 1.09001 * 109.61001 * 187.84484 * 10 9 8 33 33 H 1.08994 * 109.44812 * 67.69940 * 10 9 8 34 34 H 1.09003 * 113.78905 * 251.97500 * 12 11 10 35 35 H 1.09000 * 113.79366 * 23.43811 * 12 11 10 36 36 H 0.97001 * 120.00081 * 179.97438 * 17 16 14 37 37 H 1.08995 * 113.79272 * 270.05082 * 22 13 12 38 38 H 1.08996 * 113.79214 * 138.57626 * 22 13 12 39 39 H 1.08993 * 109.53236 * 182.52304 * 23 11 10 40 40 H 1.09003 * 109.58868 * 62.33973 * 23 11 10 41 41 H 1.08999 * 109.58462 * 244.25172 * 24 8 6 42 42 H 1.09000 * 109.58945 * 4.68033 * 24 8 6 43 43 H 1.08009 * 126.45696 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 7 3.3349 1.3977 0.0005 5 6 3.5702 2.7405 -0.0003 6 6 4.8893 3.3975 0.0004 7 8 4.9677 4.6040 0.1327 8 7 6.0088 2.6614 -0.1454 9 6 7.3321 3.2798 0.0092 10 6 8.1525 3.0233 -1.2548 11 6 8.1408 1.5286 -1.5658 12 6 9.1094 1.1259 -2.6861 13 7 9.4497 -0.0314 -1.8344 14 6 9.9570 -1.2809 -2.0721 15 1 10.1194 -1.9631 -1.2506 16 6 10.2625 -1.6708 -3.3688 17 7 10.0649 -0.8394 -4.3698 18 14 10.9538 -3.3757 -3.6931 19 1 11.0799 -4.1112 -2.4092 20 1 10.0400 -4.1162 -4.5996 21 1 12.2906 -3.2550 -4.3284 22 6 9.0243 0.6989 -0.6235 23 6 6.7340 0.9620 -1.7404 24 6 5.9228 1.2308 -0.4673 25 6 2.3604 3.3599 -0.0007 26 8 1.4228 2.3958 -0.0058 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 7.2186 4.3535 0.1577 31 1 7.8421 2.8418 0.8674 32 1 9.1790 3.3549 -1.0983 33 1 7.7153 3.5724 -2.0887 34 1 8.6147 0.8550 -3.6188 35 1 9.9335 1.8252 -2.8274 36 1 10.2787 -1.1117 -5.2759 37 1 9.8229 1.2713 -0.1519 38 1 8.4616 0.0888 0.0831 39 1 6.7929 -0.1122 -1.9149 40 1 6.2490 1.4432 -2.5898 41 1 6.3313 0.6457 0.3567 42 1 4.8812 0.9554 -0.6326 43 1 2.1850 4.4257 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035760234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:38 Heat of formation + Delta-G solvation = 9.794799 kcal Electronic energy + Delta-G solvation = -27631.075262 eV Core-core repulsion = 23680.583881 eV Total energy + Delta-G solvation = -3950.491381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.56012 -41.50907 -40.12195 -39.69708 -37.11402 -36.11962 -34.37640 -32.43000 -31.83132 -31.08732 -28.72711 -28.28991 -26.77849 -26.00554 -24.54926 -24.27633 -23.41508 -22.67119 -21.29216 -19.76648 -18.90125 -18.67984 -18.56368 -18.00255 -17.43246 -16.98479 -16.84958 -16.37550 -16.25740 -16.07707 -15.89210 -15.59705 -15.11900 -14.89152 -14.56299 -14.43198 -14.16300 -13.70915 -13.56181 -13.09437 -13.07227 -12.97331 -12.90070 -12.83035 -12.66280 -12.21983 -12.13508 -12.05037 -12.00116 -11.64290 -11.46152 -11.11274 -10.97358 -10.89484 -10.62595 -9.85248 -9.53524 -8.85599 -7.86651 -5.18958 0.04789 0.87006 0.91099 1.45488 1.46490 1.56733 1.71355 1.98383 2.18350 2.49547 3.20515 3.33752 3.44292 3.66101 3.77670 3.93310 4.03660 4.13692 4.21777 4.23486 4.27430 4.35542 4.39151 4.45126 4.58788 4.67422 4.70028 4.74177 4.82973 4.89618 4.91760 5.04072 5.15626 5.18757 5.26230 5.29999 5.36702 5.53945 5.61530 5.70479 5.81355 5.98541 6.28578 6.48906 6.96185 7.01090 7.65049 8.62832 9.30345 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.003389 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.645405 B = 8260.864465 C = 9714.239483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.258 6.258 3 C 0.383 3.617 4 N -0.481 5.481 5 C -0.077 4.077 6 C 0.600 3.400 7 O -0.564 6.564 8 N -0.588 5.588 9 C 0.118 3.882 10 C -0.108 4.108 11 C -0.085 4.085 12 C 0.169 3.831 13 N -0.637 5.637 14 C -0.229 4.229 15 H 0.082 0.918 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.976 3.024 19 H -0.265 1.265 20 H -0.292 1.292 21 H -0.294 1.294 22 C 0.130 3.870 23 C -0.088 4.088 24 C 0.096 3.904 25 C 0.034 3.966 26 O -0.214 6.214 27 H 0.076 0.924 28 H 0.143 0.857 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.014 0.986 36 H 0.246 0.754 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.139 0.861 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.093 8.025 11.195 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.166 6.166 3 C 0.138 3.862 4 N -0.228 5.228 5 C -0.194 4.194 6 C 0.389 3.611 7 O -0.445 6.445 8 N -0.318 5.318 9 C -0.004 4.004 10 C -0.147 4.147 11 C -0.086 4.086 12 C 0.044 3.956 13 N -0.363 5.363 14 C -0.358 4.358 15 H 0.099 0.901 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.804 3.196 19 H -0.190 1.190 20 H -0.219 1.219 21 H -0.221 1.221 22 C 0.005 3.995 23 C -0.126 4.126 24 C -0.026 4.026 25 C -0.039 4.039 26 O -0.105 6.105 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.156 0.844 43 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -21.504 7.623 11.119 25.380 hybrid contribution 0.347 -0.633 -0.791 1.071 sum -21.157 6.990 10.328 24.559 Atomic orbital electron populations 1.23697 0.72627 1.07675 1.03971 1.86440 1.26185 1.15116 1.88817 1.23727 0.85649 0.80268 0.96564 1.70915 1.10211 1.15954 1.25689 1.21540 0.95954 0.88590 1.13290 1.16936 0.82492 0.85364 0.76326 1.90778 1.86779 1.13619 1.53282 1.47963 1.05789 1.10833 1.67258 1.21608 0.81231 0.99637 0.97892 1.21658 1.00922 0.94269 0.97867 1.22153 0.94730 0.94540 0.97163 1.22156 0.92840 0.86377 0.94266 1.46321 1.75414 1.10235 1.04369 1.19456 1.34023 0.89394 0.92903 0.90069 1.25581 1.03170 1.01949 0.95434 1.70031 1.55272 1.36485 0.98566 0.85045 0.77095 0.79547 0.77883 1.18952 1.21939 1.22127 1.22746 0.94308 0.92046 0.90362 1.21369 0.93316 1.00350 0.97601 1.22567 1.04895 0.79127 0.96035 1.25555 0.83705 0.94768 0.99862 1.84430 1.39065 1.15463 1.71497 0.90494 0.83948 0.90222 0.88560 0.89949 0.89582 0.91897 0.94642 0.96852 0.94488 0.93565 0.93149 0.92471 0.92795 0.91537 0.84433 0.71481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.73 113.37 1.22 1.31 16 2 O -0.26 -4.51 10.55 -64.24 -0.68 -5.19 16 3 C 0.38 7.97 8.98 130.43 1.17 9.14 16 4 N -0.48 -12.44 7.86 -419.39 -3.30 -15.74 16 5 C -0.08 -1.87 6.66 40.31 0.27 -1.60 16 6 C 0.60 17.21 7.67 86.65 0.66 17.87 16 7 O -0.56 -17.66 16.30 -4.11 -0.07 -17.72 16 8 N -0.59 -17.12 2.95 -823.43 -2.43 -19.55 16 9 C 0.12 3.19 6.29 86.26 0.54 3.73 16 10 C -0.11 -3.28 5.24 30.44 0.16 -3.12 16 11 C -0.08 -3.19 0.77 -52.03 -0.04 -3.23 16 12 C 0.17 8.32 6.64 86.31 0.57 8.90 16 13 N -0.64 -33.48 3.53 -722.65 -2.55 -36.03 16 14 C -0.23 -13.20 10.70 84.03 0.90 -12.31 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 17 N -0.95 -59.20 11.39 21.65 0.25 -58.95 16 18 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 C 0.13 5.29 7.73 86.32 0.67 5.96 16 23 C -0.09 -3.21 5.21 30.60 0.16 -3.05 16 24 C 0.10 2.95 6.00 86.42 0.52 3.46 16 25 C 0.03 0.56 11.94 67.28 0.80 1.37 16 26 O -0.21 -3.50 10.20 18.90 0.19 -3.31 16 27 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 2.51 6.98 -2.39 -0.02 2.49 16 31 H 0.08 2.04 8.08 -2.38 -0.02 2.02 16 32 H 0.09 2.44 8.12 -2.39 -0.02 2.42 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 1.98 7.12 -2.39 -0.02 1.96 16 35 H 0.01 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 38 H 0.05 1.96 7.41 -2.39 -0.02 1.94 16 39 H 0.06 2.42 8.01 -2.39 -0.02 2.40 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 2.04 7.49 -2.39 -0.02 2.02 16 42 H 0.14 4.24 4.02 -25.30 -0.10 4.13 16 43 H 0.27 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -75.52 352.01 2.45 -73.06 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.94 Total: 9.58 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 8.07 Total: 24.86 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -8.03 Total: -130.26 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.55 Total: -26.22 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -75.52 2.45 -73.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035760234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.859 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds