Wall clock time and date at job start Tue Mar 31 2020 13:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35732 * 117.00154 * 2 1 4 4 C 1.41849 * 126.78910 * 179.71193 * 3 2 1 5 5 C 1.36659 * 103.81136 * 179.85731 * 4 3 2 6 6 C 1.47550 * 126.87841 * 180.12528 * 5 4 3 7 7 O 1.21579 * 119.99557 * 355.00142 * 6 5 4 8 8 N 1.34772 * 119.99697 * 175.00230 * 6 5 4 9 9 C 1.47137 * 121.01620 * 5.53362 * 8 6 5 10 10 C 1.53046 * 107.68519 * 237.41449 * 9 8 6 11 11 C 1.51137 * 111.10656 * 305.59174 * 10 9 8 12 12 H 1.09001 * 108.45951 * 175.39150 * 11 10 9 13 13 C 1.53987 * 113.17532 * 55.13414 * 11 10 9 14 14 H 1.09000 * 112.72000 * 75.95888 * 13 11 10 15 15 C 1.56011 * 100.38958 * 196.33611 * 13 11 10 16 16 C 1.54505 * 102.62014 * 36.87088 * 15 13 11 17 17 N 1.46476 * 113.22745 * 294.92334 * 11 10 9 18 18 C 1.36936 * 126.05122 * 330.48518 * 17 11 10 19 19 H 1.07997 * 120.00788 * 5.02814 * 18 17 11 20 20 C 1.38818 * 119.99667 * 185.03037 * 18 17 11 21 21 N 1.31620 * 120.00078 * 354.94407 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 174.94219 * 20 18 17 23 23 H 1.48497 * 109.47119 * 94.99926 * 22 20 18 24 24 H 1.48504 * 109.47196 * 215.00126 * 22 20 18 25 25 H 1.48502 * 109.47009 * 334.99866 * 22 20 18 26 26 C 1.46533 * 121.00447 * 185.25300 * 8 6 5 27 27 O 1.34655 * 106.24305 * 0.40062 * 5 4 3 28 28 N 1.20874 * 111.63168 * 359.72301 * 27 5 4 29 29 H 1.08996 * 109.47307 * 299.99611 * 1 2 3 30 30 H 1.09001 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47378 * 59.99831 * 1 2 3 32 32 H 1.08005 * 128.09042 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.81472 * 356.96190 * 9 8 6 34 34 H 1.08995 * 109.82101 * 117.80208 * 9 8 6 35 35 H 1.09005 * 109.15082 * 66.01109 * 10 9 8 36 36 H 1.08997 * 109.15099 * 185.22008 * 10 9 8 37 37 H 1.08997 * 110.78344 * 155.14930 * 15 13 11 38 38 H 1.09003 * 110.78345 * 278.58925 * 15 13 11 39 39 H 1.08998 * 109.90360 * 96.54380 * 16 15 13 40 40 H 1.08997 * 109.90128 * 217.60581 * 16 15 13 41 41 H 0.96993 * 120.00401 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.34343 * 244.65389 * 26 8 6 43 43 H 1.09000 * 109.34583 * 4.20091 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4430 1.4505 0.0057 5 6 3.5389 2.8137 -0.0003 6 6 4.7784 3.6142 -0.0006 7 8 5.8578 3.0632 0.0966 8 7 4.7140 4.9560 -0.1086 9 6 3.4195 5.6555 -0.1060 10 6 3.3249 6.4632 -1.4026 11 6 4.5187 7.3761 -1.5634 12 1 4.4494 7.8671 -2.5341 13 6 5.8648 6.6317 -1.4917 14 1 6.0898 6.0798 -2.4043 15 6 6.8358 7.8290 -1.2513 16 6 6.0102 8.7532 -0.3286 17 7 4.5894 8.4205 -0.5389 18 6 3.5244 8.9876 0.1086 19 1 2.5261 8.6131 -0.0630 20 6 3.7279 10.0441 0.9858 21 7 4.9516 10.4358 1.2716 22 14 2.2652 10.9100 1.7605 23 1 1.9901 10.3192 3.0949 24 1 2.5691 12.3556 1.9123 25 1 1.0735 10.7434 0.8902 26 6 5.9313 5.7632 -0.2260 27 8 2.2758 3.2802 0.0004 28 7 1.4685 2.3805 0.0004 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 4.2441 0.7261 0.0106 33 1 2.6074 4.9297 -0.0627 34 1 3.3628 6.3248 0.7523 35 1 3.2826 5.7774 -2.2488 36 1 2.4159 7.0643 -1.3839 37 1 7.7448 7.4952 -0.7510 38 1 7.0715 8.3303 -2.1900 39 1 6.2823 8.5776 0.7122 40 1 6.1923 9.7958 -0.5888 41 1 5.0938 11.1743 1.8842 42 1 6.0255 6.4041 0.6506 43 1 6.7975 5.1040 -0.2834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036692178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:55 Heat of formation + Delta-G solvation = 46.293770 kcal Electronic energy + Delta-G solvation = -28254.263202 eV Core-core repulsion = 24305.354536 eV Total energy + Delta-G solvation = -3948.908667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.12268 -40.17938 -39.09719 -38.34991 -35.26341 -33.37026 -32.93442 -31.90280 -31.71952 -29.34429 -27.93643 -27.69882 -25.76599 -24.43307 -23.56802 -22.79655 -22.54781 -20.81607 -20.05113 -18.89915 -18.08976 -17.83754 -17.20702 -16.45624 -16.17387 -15.97154 -15.78997 -15.32235 -15.05210 -14.78902 -14.44314 -14.00823 -13.82310 -13.80842 -13.08977 -13.00244 -12.54848 -12.34219 -12.16403 -12.15404 -11.64739 -11.56570 -11.44135 -11.18868 -11.04769 -10.77749 -10.69291 -10.33133 -10.14464 -9.99323 -9.97879 -9.89099 -9.70187 -9.60844 -9.53774 -8.61967 -8.38730 -6.84989 -5.75651 -3.07948 0.66814 1.94412 2.41275 2.49772 2.97894 3.27970 3.37480 3.43804 3.45295 3.90620 4.42778 4.46563 4.65007 4.79736 4.85223 5.01360 5.13286 5.16542 5.22926 5.35257 5.44474 5.47011 5.51115 5.63147 5.73111 5.85571 5.98577 6.02999 6.20574 6.27699 6.30362 6.37073 6.50932 6.57850 6.68697 6.71581 6.81334 6.86291 7.43308 7.52112 7.59268 7.78720 7.85494 8.07678 8.21352 9.17341 9.79662 10.46900 11.36695 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.003911 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.657554 B = 7157.854618 C = 8407.577922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.283 6.283 3 C 0.204 3.796 4 C -0.160 4.160 5 C -0.045 4.045 6 C 0.597 3.403 7 O -0.523 6.523 8 N -0.581 5.581 9 C 0.100 3.900 10 C -0.128 4.128 11 C 0.169 3.831 12 H 0.021 0.979 13 C -0.117 4.117 14 H 0.080 0.920 15 C -0.142 4.142 16 C 0.175 3.825 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.126 3.874 27 O 0.118 5.882 28 N -0.396 5.396 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.189 0.811 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -16.158 -4.354 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.189 6.189 3 C 0.007 3.993 4 C -0.183 4.183 5 C -0.111 4.111 6 C 0.382 3.618 7 O -0.401 6.401 8 N -0.311 5.311 9 C -0.022 4.022 10 C -0.167 4.167 11 C 0.061 3.939 12 H 0.038 0.962 13 C -0.137 4.137 14 H 0.098 0.902 15 C -0.181 4.181 16 C 0.051 3.949 17 N -0.320 5.320 18 C -0.355 4.355 19 H 0.098 0.902 20 C -0.201 4.201 21 N -0.565 5.565 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.005 3.995 27 O 0.056 5.944 28 N -0.122 5.122 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.206 0.794 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.390 -16.121 -4.135 17.212 hybrid contribution -0.484 0.226 0.437 0.690 sum -4.873 -15.895 -3.697 17.032 Atomic orbital electron populations 1.23090 0.76648 1.04131 1.02550 1.86204 1.22712 1.20528 1.89463 1.21851 0.90581 0.85792 1.01105 1.22126 0.94381 0.94849 1.06924 1.24174 0.87049 0.93767 1.06101 1.16606 0.85027 0.81799 0.78414 1.90840 1.26745 1.70994 1.51534 1.48061 1.09976 1.04436 1.68605 1.22331 0.82842 0.96144 1.00889 1.21594 1.00863 0.98136 0.96099 1.20279 0.91205 0.89056 0.93350 0.96175 1.22844 0.98234 0.95948 0.96676 0.90166 1.23146 0.97816 0.96409 1.00733 1.21256 0.82124 0.95642 0.95903 1.44339 1.02637 1.41247 1.43810 1.18965 0.86615 1.10863 1.19049 0.90240 1.24777 0.96420 0.98823 1.00122 1.69952 1.18183 1.29934 1.38480 0.86201 0.81799 0.79241 0.79136 1.21746 1.21758 1.20628 1.21812 0.85369 0.93111 0.99197 1.85146 1.12073 1.28528 1.68612 1.73984 1.16965 0.96830 1.24440 0.92094 0.87600 0.92110 0.79401 0.89122 0.88362 0.92571 0.90174 0.91886 0.92188 0.93816 0.93623 0.93781 0.89537 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.73 101.05 1.08 1.33 16 2 O -0.28 -3.16 10.57 -18.90 -0.20 -3.36 16 3 C 0.20 2.61 8.00 -16.72 -0.13 2.47 16 4 C -0.16 -2.00 10.97 -38.77 -0.43 -2.43 16 5 C -0.05 -0.63 7.00 -36.36 -0.25 -0.89 16 6 C 0.60 9.40 7.70 -12.47 -0.10 9.30 16 7 O -0.52 -9.24 16.36 5.30 0.09 -9.15 16 8 N -0.58 -9.30 2.93 -173.94 -0.51 -9.81 16 9 C 0.10 1.60 6.25 -3.67 -0.02 1.57 16 10 C -0.13 -2.09 5.17 -27.64 -0.14 -2.23 16 11 C 0.17 3.15 2.85 -68.37 -0.19 2.95 16 12 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 13 C -0.12 -1.91 3.88 -88.15 -0.34 -2.25 16 14 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.14 -2.45 6.29 -24.33 -0.15 -2.60 16 16 C 0.18 3.92 4.64 -2.74 -0.01 3.90 16 17 N -0.59 -13.55 3.12 -164.50 -0.51 -14.06 16 18 C -0.23 -5.71 9.03 -15.06 -0.14 -5.84 16 19 H 0.08 1.92 6.66 -52.49 -0.35 1.57 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -25.64 10.41 55.49 0.58 -25.06 16 22 Si 0.91 21.16 29.56 -169.99 -5.02 16.13 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.13 2.09 5.46 -3.68 -0.02 2.07 16 27 O 0.12 1.66 7.75 15.52 0.12 1.78 16 28 N -0.40 -5.43 11.50 30.47 0.35 -5.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.19 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.09 1.32 3.86 -54.46 -0.21 1.11 16 34 H 0.10 1.81 7.48 -51.93 -0.39 1.42 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.36 7.01 -51.93 -0.36 0.99 16 37 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.04 1.08 7.13 -51.93 -0.37 0.71 16 40 H 0.05 1.16 7.44 -51.93 -0.39 0.77 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.09 1.61 6.81 -51.93 -0.35 1.26 16 43 H 0.08 1.34 7.02 -51.93 -0.36 0.97 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -29.29 341.71 -6.62 -35.91 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.72 Total: 0.42 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.94 Total: 7.13 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.09 Total: -54.01 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.01 Total: -10.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.29 -6.62 -35.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036692178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.206 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds