Wall clock time and date at job start Tue Mar 31 2020 13:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35732 * 117.00154 * 2 1 4 4 C 1.41849 * 126.78910 * 179.71193 * 3 2 1 5 5 C 1.36659 * 103.81136 * 179.85731 * 4 3 2 6 6 C 1.47550 * 126.87841 * 180.12528 * 5 4 3 7 7 O 1.21579 * 119.99557 * 355.00142 * 6 5 4 8 8 N 1.34772 * 119.99697 * 175.00230 * 6 5 4 9 9 C 1.47137 * 121.01620 * 5.53362 * 8 6 5 10 10 C 1.53046 * 107.68519 * 237.41449 * 9 8 6 11 11 C 1.51137 * 111.10656 * 305.59174 * 10 9 8 12 12 H 1.09001 * 108.45951 * 175.39150 * 11 10 9 13 13 C 1.53987 * 113.17532 * 55.13414 * 11 10 9 14 14 H 1.09000 * 112.72000 * 75.95888 * 13 11 10 15 15 C 1.56011 * 100.38958 * 196.33611 * 13 11 10 16 16 C 1.54505 * 102.62014 * 36.87088 * 15 13 11 17 17 N 1.46476 * 113.22745 * 294.92334 * 11 10 9 18 18 C 1.36936 * 126.05122 * 330.48518 * 17 11 10 19 19 H 1.07997 * 120.00788 * 5.02814 * 18 17 11 20 20 C 1.38818 * 119.99667 * 185.03037 * 18 17 11 21 21 N 1.31620 * 120.00078 * 354.94407 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 174.94219 * 20 18 17 23 23 H 1.48497 * 109.47119 * 94.99926 * 22 20 18 24 24 H 1.48504 * 109.47196 * 215.00126 * 22 20 18 25 25 H 1.48502 * 109.47009 * 334.99866 * 22 20 18 26 26 C 1.46533 * 121.00447 * 185.25300 * 8 6 5 27 27 O 1.34655 * 106.24305 * 0.40062 * 5 4 3 28 28 N 1.20874 * 111.63168 * 359.72301 * 27 5 4 29 29 H 1.08996 * 109.47307 * 299.99611 * 1 2 3 30 30 H 1.09001 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47378 * 59.99831 * 1 2 3 32 32 H 1.08005 * 128.09042 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.81472 * 356.96190 * 9 8 6 34 34 H 1.08995 * 109.82101 * 117.80208 * 9 8 6 35 35 H 1.09005 * 109.15082 * 66.01109 * 10 9 8 36 36 H 1.08997 * 109.15099 * 185.22008 * 10 9 8 37 37 H 1.08997 * 110.78344 * 155.14930 * 15 13 11 38 38 H 1.09003 * 110.78345 * 278.58925 * 15 13 11 39 39 H 1.08998 * 109.90360 * 96.54380 * 16 15 13 40 40 H 1.08997 * 109.90128 * 217.60581 * 16 15 13 41 41 H 0.96993 * 120.00401 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.34343 * 244.65389 * 26 8 6 43 43 H 1.09000 * 109.34583 * 4.20091 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4430 1.4505 0.0057 5 6 3.5389 2.8137 -0.0003 6 6 4.7784 3.6142 -0.0006 7 8 5.8578 3.0632 0.0966 8 7 4.7140 4.9560 -0.1086 9 6 3.4195 5.6555 -0.1060 10 6 3.3249 6.4632 -1.4026 11 6 4.5187 7.3761 -1.5634 12 1 4.4494 7.8671 -2.5341 13 6 5.8648 6.6317 -1.4917 14 1 6.0898 6.0798 -2.4043 15 6 6.8358 7.8290 -1.2513 16 6 6.0102 8.7532 -0.3286 17 7 4.5894 8.4205 -0.5389 18 6 3.5244 8.9876 0.1086 19 1 2.5261 8.6131 -0.0630 20 6 3.7279 10.0441 0.9858 21 7 4.9516 10.4358 1.2716 22 14 2.2652 10.9100 1.7605 23 1 1.9901 10.3192 3.0949 24 1 2.5691 12.3556 1.9123 25 1 1.0735 10.7434 0.8902 26 6 5.9313 5.7632 -0.2260 27 8 2.2758 3.2802 0.0004 28 7 1.4685 2.3805 0.0004 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 4.2441 0.7261 0.0106 33 1 2.6074 4.9297 -0.0627 34 1 3.3628 6.3248 0.7523 35 1 3.2826 5.7774 -2.2488 36 1 2.4159 7.0643 -1.3839 37 1 7.7448 7.4952 -0.7510 38 1 7.0715 8.3303 -2.1900 39 1 6.2823 8.5776 0.7122 40 1 6.1923 9.7958 -0.5888 41 1 5.0938 11.1743 1.8842 42 1 6.0255 6.4041 0.6506 43 1 6.7975 5.1040 -0.2834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036692178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:54 Heat of formation + Delta-G solvation = 26.411319 kcal Electronic energy + Delta-G solvation = -28255.125370 eV Core-core repulsion = 24305.354536 eV Total energy + Delta-G solvation = -3949.770834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.14681 -41.52565 -39.94463 -39.77929 -36.69903 -34.65112 -34.36828 -33.24083 -33.02806 -31.03097 -29.22486 -28.62945 -27.18448 -26.11710 -24.63468 -24.06333 -23.86672 -21.96276 -21.67851 -20.27079 -19.16585 -19.09442 -18.25640 -18.15907 -17.45313 -17.10590 -16.84637 -16.61564 -16.32580 -16.07954 -15.80455 -15.60835 -15.17194 -14.94219 -14.54409 -14.46450 -13.88364 -13.74559 -13.20068 -13.18270 -13.06467 -12.91014 -12.83818 -12.61976 -12.55904 -12.49223 -12.21788 -11.95615 -11.71842 -11.52016 -11.48680 -11.24415 -11.15373 -11.03239 -10.60074 -10.47955 -9.73983 -8.75785 -7.76788 -5.08356 -0.41767 0.95498 1.33580 1.49610 1.50938 1.54618 1.58731 1.78645 2.12654 2.55297 2.93561 3.30533 3.43670 3.61242 3.65649 3.88964 3.92371 3.98734 4.07443 4.24323 4.25957 4.26044 4.34696 4.47531 4.57339 4.59472 4.62534 4.65143 4.80545 4.80976 4.94706 5.00499 5.14539 5.21808 5.27790 5.40680 5.46153 5.62144 5.75312 5.83652 5.86101 6.16743 6.28753 6.67421 6.96426 7.19206 7.88705 8.55132 9.34960 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.003911 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.657554 B = 7157.854618 C = 8407.577922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.206 3.794 4 C -0.145 4.145 5 C -0.058 4.058 6 C 0.604 3.396 7 O -0.542 6.542 8 N -0.583 5.583 9 C 0.109 3.891 10 C -0.123 4.123 11 C 0.161 3.839 12 H 0.020 0.980 13 C -0.102 4.102 14 H 0.112 0.888 15 C -0.128 4.128 16 C 0.183 3.817 17 N -0.609 5.609 18 C -0.217 4.217 19 H 0.090 0.910 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.963 3.037 23 H -0.293 1.293 24 H -0.302 1.302 25 H -0.267 1.267 26 C 0.132 3.868 27 O 0.110 5.890 28 N -0.403 5.403 29 H 0.059 0.941 30 H 0.138 0.862 31 H 0.061 0.939 32 H 0.208 0.792 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.009 0.991 40 H 0.006 0.994 41 H 0.242 0.758 42 H 0.057 0.943 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 -18.835 -5.771 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.194 6.194 3 C 0.008 3.992 4 C -0.168 4.168 5 C -0.123 4.123 6 C 0.390 3.610 7 O -0.421 6.421 8 N -0.313 5.313 9 C -0.013 4.013 10 C -0.162 4.162 11 C 0.054 3.946 12 H 0.037 0.963 13 C -0.122 4.122 14 H 0.131 0.869 15 C -0.167 4.167 16 C 0.058 3.942 17 N -0.334 5.334 18 C -0.346 4.346 19 H 0.107 0.893 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.793 3.207 23 H -0.220 1.220 24 H -0.230 1.230 25 H -0.191 1.191 26 C 0.010 3.990 27 O 0.049 5.951 28 N -0.131 5.131 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.027 0.973 40 H 0.024 0.976 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.433 -18.834 -5.582 20.381 hybrid contribution -0.235 0.929 0.857 1.286 sum -5.667 -17.906 -4.724 19.366 Atomic orbital electron populations 1.23389 0.74845 1.06322 1.02508 1.86226 1.24484 1.19571 1.89118 1.21993 0.90786 0.86082 1.00312 1.22410 0.94901 0.94547 1.04936 1.23861 0.86603 0.94035 1.07823 1.16661 0.85370 0.81461 0.77490 1.90829 1.27703 1.71269 1.52311 1.48028 1.09647 1.04713 1.68906 1.22180 0.83528 0.96087 0.99522 1.21540 0.99320 0.98065 0.97242 1.20520 0.93644 0.88714 0.91713 0.96280 1.22826 0.96156 0.95398 0.97796 0.86948 1.23015 0.97835 0.95680 1.00181 1.20993 0.83134 0.94826 0.95254 1.44567 1.02317 1.42259 1.44305 1.19344 0.87768 1.09837 1.17663 0.89268 1.25484 0.98362 1.00319 1.01748 1.70165 1.19873 1.30439 1.39642 0.85280 0.79753 0.77374 0.78312 1.22039 1.22961 1.19131 1.21667 0.86195 0.92991 0.98164 1.85072 1.12017 1.28846 1.69192 1.73974 1.16928 0.97235 1.24989 0.92231 0.84395 0.92025 0.77492 0.87319 0.91407 0.89780 0.90825 0.89955 0.90718 0.97275 0.97574 0.94896 0.92416 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.73 113.37 1.22 1.52 16 2 O -0.29 -5.67 10.57 -90.55 -0.96 -6.62 16 3 C 0.21 4.75 8.00 85.78 0.69 5.44 16 4 C -0.15 -3.27 10.97 22.79 0.25 -3.02 16 5 C -0.06 -1.50 7.00 24.36 0.17 -1.33 16 6 C 0.60 17.91 7.70 86.70 0.67 18.58 16 7 O -0.54 -18.08 16.36 -3.96 -0.06 -18.15 16 8 N -0.58 -17.88 2.93 -822.51 -2.41 -20.28 16 9 C 0.11 3.37 6.25 86.27 0.54 3.90 16 10 C -0.12 -3.78 5.17 30.00 0.16 -3.62 16 11 C 0.16 5.77 2.85 44.72 0.13 5.89 16 12 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 13 C -0.10 -3.11 3.88 -9.20 -0.04 -3.15 16 14 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 15 C -0.13 -4.28 6.29 32.15 0.20 -4.08 16 16 C 0.18 8.45 4.64 86.71 0.40 8.86 16 17 N -0.61 -28.13 3.12 -674.34 -2.10 -30.23 16 18 C -0.22 -11.08 9.03 84.04 0.76 -10.32 16 19 H 0.09 4.29 6.66 -2.91 -0.02 4.27 16 20 C -0.07 -3.62 5.49 84.86 0.47 -3.15 16 21 N -0.95 -55.67 10.41 21.65 0.23 -55.45 16 22 Si 0.96 44.55 29.56 68.60 2.03 46.58 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 C 0.13 4.20 5.46 86.59 0.47 4.67 16 27 O 0.11 2.87 7.75 65.71 0.51 3.38 16 28 N -0.40 -10.22 11.50 -172.02 -1.98 -12.20 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.21 3.74 8.06 -2.91 -0.02 3.71 16 33 H 0.11 2.99 3.86 -42.51 -0.16 2.83 16 34 H 0.07 2.52 7.48 -2.39 -0.02 2.50 16 35 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.07 2.37 7.01 -2.39 -0.02 2.36 16 37 H 0.08 2.44 7.97 -2.39 -0.02 2.42 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.01 0.47 7.13 -2.39 -0.02 0.46 16 40 H 0.01 0.32 7.44 -2.39 -0.02 0.30 16 41 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.06 2.19 6.81 -2.39 -0.02 2.17 16 43 H 0.09 2.85 7.02 -2.39 -0.02 2.83 16 Total: -1.00 -64.94 341.71 2.21 -62.72 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.89 Total: 10.06 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 6.08 Total: 20.20 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -6.27 Total: -118.16 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.51 Total: -21.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.94 2.21 -62.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036692178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.133 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds