Wall clock time and date at job start Tue Mar 31 2020 13:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 O 1.20926 * 124.56955 * 2 1 4 4 C 1.34165 * 112.19065 * 180.22789 * 3 2 1 5 5 C 1.48212 * 126.38415 * 179.77893 * 4 3 2 6 6 O 1.21492 * 119.99676 * 179.69112 * 5 4 3 7 7 N 1.34770 * 119.99702 * 359.69278 * 5 4 3 8 8 C 1.44221 * 115.76430 * 359.97438 * 7 5 4 9 9 C 1.51864 * 112.74934 * 186.22633 * 8 7 5 10 10 C 1.50987 * 111.88619 * 324.22132 * 9 8 7 11 11 H 1.09001 * 108.32310 * 180.27172 * 10 9 8 12 12 C 1.53982 * 111.97723 * 60.08109 * 10 9 8 13 13 H 1.08997 * 112.41699 * 75.67904 * 12 10 9 14 14 C 1.56267 * 99.75731 * 195.21952 * 12 10 9 15 15 C 1.54644 * 102.20602 * 38.87640 * 14 12 10 16 16 N 1.46661 * 113.21396 * 301.26188 * 10 9 8 17 17 C 1.36938 * 126.19820 * 330.13757 * 16 10 9 18 18 H 1.07999 * 119.99862 * 359.97438 * 17 16 10 19 19 C 1.38812 * 120.00039 * 179.97438 * 17 16 10 20 20 N 1.31625 * 119.99825 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99806 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47108 * 60.00046 * 21 19 17 23 23 H 1.48504 * 109.46722 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47185 * 299.99403 * 21 19 17 25 25 C 1.43527 * 115.76319 * 180.02562 * 7 5 4 26 26 C 1.36313 * 107.23094 * 359.52337 * 4 3 2 27 27 C 1.34830 * 124.56579 * 179.70994 * 2 1 3 28 28 O 1.21984 * 127.14646 * 359.97267 * 27 2 1 29 29 H 1.09003 * 109.47099 * 270.29972 * 1 2 3 30 30 H 1.09005 * 109.47017 * 30.29134 * 1 2 3 31 31 H 1.09000 * 109.47581 * 150.29494 * 1 2 3 32 32 H 1.09003 * 108.82833 * 65.39024 * 8 7 5 33 33 H 1.08996 * 108.82722 * 307.07263 * 8 7 5 34 34 H 1.08993 * 109.00183 * 203.59622 * 9 8 7 35 35 H 1.09003 * 108.92922 * 84.79401 * 9 8 7 36 36 H 1.08998 * 110.85484 * 157.05426 * 14 12 10 37 37 H 1.08996 * 110.85860 * 280.69333 * 14 12 10 38 38 H 1.09000 * 109.96703 * 95.28438 * 15 14 12 39 39 H 1.08994 * 109.96820 * 216.51339 * 15 14 12 40 40 H 0.97000 * 119.99299 * 180.02562 * 20 19 17 41 41 H 1.09003 * 108.16500 * 58.82972 * 25 7 5 42 42 H 1.09000 * 108.16360 * 302.24355 * 25 7 5 43 43 H 1.08005 * 127.99285 * 180.28231 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7081 -0.0049 5 6 4.5761 1.6851 -0.0110 6 8 5.7264 1.2943 -0.0094 7 7 4.3134 3.0069 -0.0182 8 6 2.9173 3.3686 -0.0200 9 6 2.6979 4.8628 -0.1800 10 6 3.7633 5.6668 0.5258 11 1 3.5479 6.7251 0.3783 12 6 5.1709 5.3618 -0.0187 13 1 5.3524 5.8290 -0.9866 14 6 6.0372 5.9864 1.1220 15 6 5.2361 5.6034 2.3881 16 7 3.8376 5.3911 1.9644 17 6 2.7982 5.0067 2.7689 18 1 1.8101 4.8813 2.3515 19 6 3.0148 4.7783 4.1209 20 7 4.2192 4.9307 4.6294 21 14 1.5968 4.2546 5.2184 22 1 1.0352 2.9722 4.7233 23 1 2.0871 4.0758 6.6088 24 1 0.5414 5.2989 5.1956 25 6 5.4596 3.8708 -0.0242 26 6 3.5769 -0.6501 0.0024 27 6 2.2299 -1.1103 0.0056 28 8 1.8472 -2.2685 0.0119 29 1 -0.3633 0.0054 1.0277 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5092 32 1 2.4691 3.0460 0.9199 33 1 2.4207 2.8503 -0.8402 34 1 1.7238 5.1247 0.2329 35 1 2.7113 5.1105 -1.2414 36 1 7.0317 5.5406 1.1425 37 1 6.0984 7.0693 1.0143 38 1 5.6376 4.6864 2.8194 39 1 5.2857 6.4110 3.1184 40 1 4.3705 4.7707 5.5741 41 1 6.0527 3.6422 -0.9097 42 1 6.0644 3.6389 0.8525 43 1 4.4813 -1.2405 0.0055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036700578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:46 Heat of formation + Delta-G solvation = 58.599304 kcal Electronic energy + Delta-G solvation = -29147.421690 eV Core-core repulsion = 25199.046632 eV Total energy + Delta-G solvation = -3948.375059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.07043 -40.56222 -38.43287 -38.11309 -35.41006 -34.30998 -32.98924 -32.21212 -32.03683 -29.75480 -28.55744 -27.48234 -25.47971 -24.43427 -23.51761 -22.96931 -22.48452 -20.28288 -19.97671 -18.51054 -18.40568 -17.74149 -17.16723 -16.54649 -16.12532 -16.07707 -15.25770 -14.99936 -14.84702 -14.41164 -14.20650 -13.87805 -13.77751 -13.65111 -13.46681 -13.35829 -13.06765 -12.97785 -12.65754 -12.18825 -11.68364 -11.61066 -11.34761 -11.05856 -10.87656 -10.80989 -10.43925 -10.28979 -10.13949 -9.98631 -9.94877 -9.91358 -9.79953 -9.67036 -8.69074 -8.57270 -8.29309 -6.92254 -5.79670 -3.12770 0.60921 1.61505 2.61308 2.83686 3.10481 3.31887 3.36132 3.39659 3.40348 4.39719 4.40401 4.67034 4.94857 4.96053 4.98076 5.03628 5.11663 5.15932 5.26514 5.26768 5.34757 5.44819 5.59964 5.67857 5.80309 5.87193 5.88702 5.94499 6.09556 6.15908 6.22676 6.29741 6.36915 6.54803 6.60801 6.73866 6.81030 7.29916 7.45440 7.53111 7.60665 7.73313 7.93885 8.06182 8.15415 9.11029 9.73568 10.40879 11.32453 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.005823 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.638836 B = 4807.503119 C = 6110.254239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.456 5.456 3 O 0.005 5.995 4 C 0.047 3.953 5 C 0.581 3.419 6 O -0.507 6.507 7 N -0.552 5.552 8 C 0.117 3.883 9 C -0.120 4.120 10 C 0.168 3.832 11 H 0.028 0.972 12 C -0.113 4.113 13 H 0.085 0.915 14 C -0.142 4.142 15 C 0.175 3.825 16 N -0.591 5.591 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.140 3.860 26 C -0.249 4.249 27 C 0.482 3.518 28 O -0.532 6.532 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.253 0.747 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 -1.777 -12.423 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.219 5.219 3 O -0.005 6.005 4 C -0.012 4.012 5 C 0.365 3.635 6 O -0.383 6.383 7 N -0.281 5.281 8 C -0.006 4.006 9 C -0.159 4.159 10 C 0.060 3.940 11 H 0.045 0.955 12 C -0.133 4.133 13 H 0.103 0.897 14 C -0.181 4.181 15 C 0.051 3.949 16 N -0.317 5.317 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.018 3.982 26 C -0.274 4.274 27 C 0.280 3.720 28 O -0.414 6.414 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.555 -2.333 -12.149 12.871 hybrid contribution -0.796 -0.217 0.862 1.193 sum -4.351 -2.550 -11.287 12.362 Atomic orbital electron populations 1.22114 0.70920 1.05362 1.04601 1.46118 1.06012 1.00272 1.69515 1.84391 1.15341 1.20223 1.80557 1.23471 0.81748 0.96290 0.99663 1.16963 0.85455 0.81855 0.79266 1.90839 1.18321 1.78649 1.50521 1.46314 1.07940 1.04840 1.68959 1.20951 0.79668 0.97601 1.02384 1.21219 1.01598 0.93157 0.99926 1.20257 0.91101 0.96213 0.86403 0.95455 1.22460 0.98854 0.93372 0.98646 0.89664 1.23339 0.98280 0.99619 0.96860 1.21328 0.82756 0.99950 0.90883 1.44358 1.05926 1.80254 1.01199 1.18825 0.88131 1.39313 0.89185 0.90554 1.24760 0.96584 1.01842 0.96874 1.69925 1.19299 1.54540 1.12598 0.86317 0.81489 0.78377 0.80267 1.21309 1.21586 1.21154 1.20482 0.85553 0.89878 1.02243 1.23227 0.99552 0.93327 1.11263 1.18330 0.86706 0.85474 0.81459 1.90938 1.79175 1.15967 1.55270 0.90050 0.88817 0.87852 0.89953 0.91979 0.90212 0.92150 0.91768 0.92057 0.93450 0.93872 0.93636 0.92371 0.90659 0.79198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.95 11.22 59.85 0.67 1.62 16 2 N -0.46 -6.12 3.68 -69.77 -0.26 -6.37 16 3 O 0.01 0.07 7.18 16.84 0.12 0.20 16 4 C 0.05 0.72 6.78 -36.18 -0.25 0.48 16 5 C 0.58 9.91 7.54 -12.16 -0.09 9.82 16 6 O -0.51 -9.63 16.47 5.37 0.09 -9.54 16 7 N -0.55 -9.10 3.19 -180.15 -0.57 -9.67 16 8 C 0.12 1.77 4.24 -5.83 -0.02 1.74 16 9 C -0.12 -1.77 5.10 -28.32 -0.14 -1.92 16 10 C 0.17 2.95 2.93 -68.34 -0.20 2.75 16 11 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 12 C -0.11 -1.73 3.80 -88.93 -0.34 -2.07 16 13 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.14 -2.38 6.14 -24.11 -0.15 -2.53 16 15 C 0.18 3.91 4.82 -2.54 -0.01 3.90 16 16 N -0.59 -13.23 3.04 -164.17 -0.50 -13.73 16 17 C -0.23 -5.62 8.84 -15.06 -0.13 -5.75 16 18 H 0.08 1.80 6.89 -52.49 -0.36 1.44 16 19 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 20 N -0.92 -25.77 10.41 55.49 0.58 -25.20 16 21 Si 0.90 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.14 2.28 4.61 -6.19 -0.03 2.25 16 26 C -0.25 -3.78 10.94 -38.70 -0.42 -4.21 16 27 C 0.48 7.66 8.02 -14.66 -0.12 7.54 16 28 O -0.53 -9.82 17.84 4.93 0.09 -9.73 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.08 1.46 6.71 -51.93 -0.35 1.11 16 33 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 34 H 0.08 1.20 7.36 -51.93 -0.38 0.81 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.99 7.81 -51.93 -0.41 0.58 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.21 7.13 -51.93 -0.37 0.84 16 39 H 0.04 1.08 7.58 -51.93 -0.39 0.69 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 42 H 0.08 1.42 6.57 -51.93 -0.34 1.07 16 43 H 0.19 2.62 8.06 -52.48 -0.42 2.20 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -32.02 340.92 -7.54 -39.56 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.87 Total: -0.22 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: -1.33 Total: 13.43 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.75 Total: -54.97 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.30 Total: -19.08 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.02 -7.54 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036700578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.160 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds