Wall clock time and date at job start Tue Mar 31 2020 13:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 O 1.20926 * 124.56955 * 2 1 4 4 C 1.34165 * 112.19065 * 180.22789 * 3 2 1 5 5 C 1.48212 * 126.38415 * 179.77893 * 4 3 2 6 6 O 1.21492 * 119.99676 * 179.69112 * 5 4 3 7 7 N 1.34770 * 119.99702 * 359.69278 * 5 4 3 8 8 C 1.44221 * 115.76430 * 359.97438 * 7 5 4 9 9 C 1.51864 * 112.74934 * 186.22633 * 8 7 5 10 10 C 1.50987 * 111.88619 * 324.22132 * 9 8 7 11 11 H 1.09001 * 108.32310 * 180.27172 * 10 9 8 12 12 C 1.53982 * 111.97723 * 60.08109 * 10 9 8 13 13 H 1.08997 * 112.41699 * 75.67904 * 12 10 9 14 14 C 1.56267 * 99.75731 * 195.21952 * 12 10 9 15 15 C 1.54644 * 102.20602 * 38.87640 * 14 12 10 16 16 N 1.46661 * 113.21396 * 301.26188 * 10 9 8 17 17 C 1.36938 * 126.19820 * 330.13757 * 16 10 9 18 18 H 1.07999 * 119.99862 * 359.97438 * 17 16 10 19 19 C 1.38812 * 120.00039 * 179.97438 * 17 16 10 20 20 N 1.31625 * 119.99825 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99806 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47108 * 60.00046 * 21 19 17 23 23 H 1.48504 * 109.46722 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47185 * 299.99403 * 21 19 17 25 25 C 1.43527 * 115.76319 * 180.02562 * 7 5 4 26 26 C 1.36313 * 107.23094 * 359.52337 * 4 3 2 27 27 C 1.34830 * 124.56579 * 179.70994 * 2 1 3 28 28 O 1.21984 * 127.14646 * 359.97267 * 27 2 1 29 29 H 1.09003 * 109.47099 * 270.29972 * 1 2 3 30 30 H 1.09005 * 109.47017 * 30.29134 * 1 2 3 31 31 H 1.09000 * 109.47581 * 150.29494 * 1 2 3 32 32 H 1.09003 * 108.82833 * 65.39024 * 8 7 5 33 33 H 1.08996 * 108.82722 * 307.07263 * 8 7 5 34 34 H 1.08993 * 109.00183 * 203.59622 * 9 8 7 35 35 H 1.09003 * 108.92922 * 84.79401 * 9 8 7 36 36 H 1.08998 * 110.85484 * 157.05426 * 14 12 10 37 37 H 1.08996 * 110.85860 * 280.69333 * 14 12 10 38 38 H 1.09000 * 109.96703 * 95.28438 * 15 14 12 39 39 H 1.08994 * 109.96820 * 216.51339 * 15 14 12 40 40 H 0.97000 * 119.99299 * 180.02562 * 20 19 17 41 41 H 1.09003 * 108.16500 * 58.82972 * 25 7 5 42 42 H 1.09000 * 108.16360 * 302.24355 * 25 7 5 43 43 H 1.08005 * 127.99285 * 180.28231 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7081 -0.0049 5 6 4.5761 1.6851 -0.0110 6 8 5.7264 1.2943 -0.0094 7 7 4.3134 3.0069 -0.0182 8 6 2.9173 3.3686 -0.0200 9 6 2.6979 4.8628 -0.1800 10 6 3.7633 5.6668 0.5258 11 1 3.5479 6.7251 0.3783 12 6 5.1709 5.3618 -0.0187 13 1 5.3524 5.8290 -0.9866 14 6 6.0372 5.9864 1.1220 15 6 5.2361 5.6034 2.3881 16 7 3.8376 5.3911 1.9644 17 6 2.7982 5.0067 2.7689 18 1 1.8101 4.8813 2.3515 19 6 3.0148 4.7783 4.1209 20 7 4.2192 4.9307 4.6294 21 14 1.5968 4.2546 5.2184 22 1 1.0352 2.9722 4.7233 23 1 2.0871 4.0758 6.6088 24 1 0.5414 5.2989 5.1956 25 6 5.4596 3.8708 -0.0242 26 6 3.5769 -0.6501 0.0024 27 6 2.2299 -1.1103 0.0056 28 8 1.8472 -2.2685 0.0119 29 1 -0.3633 0.0054 1.0277 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5092 32 1 2.4691 3.0460 0.9199 33 1 2.4207 2.8503 -0.8402 34 1 1.7238 5.1247 0.2329 35 1 2.7113 5.1105 -1.2414 36 1 7.0317 5.5406 1.1425 37 1 6.0984 7.0693 1.0143 38 1 5.6376 4.6864 2.8194 39 1 5.2857 6.4110 3.1184 40 1 4.3705 4.7707 5.5741 41 1 6.0527 3.6422 -0.9097 42 1 6.0644 3.6389 0.8525 43 1 4.4813 -1.2405 0.0055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036700578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:45 Heat of formation + Delta-G solvation = 37.265189 kcal Electronic energy + Delta-G solvation = -29148.346807 eV Core-core repulsion = 25199.046632 eV Total energy + Delta-G solvation = -3949.300175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.24111 -41.89368 -39.86485 -39.37011 -36.83833 -35.43720 -34.64094 -33.49856 -33.38365 -31.37409 -29.89661 -28.67976 -26.97865 -25.95996 -24.74518 -24.27137 -23.77083 -21.86837 -21.32471 -19.79084 -19.55906 -19.09765 -18.40139 -18.17436 -17.49702 -17.37808 -16.64072 -16.43110 -16.23480 -15.91571 -15.67000 -15.22205 -15.04519 -14.93408 -14.75396 -14.52871 -14.21307 -14.09070 -13.84831 -13.65540 -13.22707 -13.03246 -12.97692 -12.71269 -12.43859 -12.28769 -12.07006 -11.81228 -11.54732 -11.48792 -11.40185 -11.25200 -11.17264 -11.09818 -10.64446 -9.77369 -9.56227 -8.80010 -7.78989 -5.10372 -0.62564 0.53666 1.34940 1.44027 1.45334 1.51383 1.60064 1.83950 2.18416 2.51070 3.17966 3.40751 3.55584 3.57762 3.80169 3.83579 3.87364 4.04472 4.10734 4.17317 4.26454 4.32481 4.49488 4.56671 4.58136 4.61603 4.66449 4.78564 4.80625 4.82443 4.94246 5.05793 5.06997 5.20075 5.33829 5.40683 5.53819 5.58779 5.71963 5.83308 6.02161 6.25130 6.39974 6.70461 6.82823 7.14837 7.86046 8.53008 9.32668 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.005823 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.638836 B = 4807.503119 C = 6110.254239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.447 5.447 3 O 0.018 5.982 4 C 0.041 3.959 5 C 0.580 3.420 6 O -0.533 6.533 7 N -0.553 5.553 8 C 0.117 3.883 9 C -0.116 4.116 10 C 0.156 3.844 11 H 0.037 0.963 12 C -0.095 4.095 13 H 0.133 0.867 14 C -0.130 4.130 15 C 0.183 3.817 16 N -0.608 5.608 17 C -0.207 4.207 18 H 0.092 0.908 19 C -0.071 4.071 20 N -0.954 5.954 21 Si 0.958 3.042 22 H -0.280 1.280 23 H -0.308 1.308 24 H -0.274 1.274 25 C 0.139 3.861 26 C -0.250 4.250 27 C 0.472 3.528 28 O -0.565 6.565 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.239 0.761 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 -0.851 -15.518 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.208 5.208 3 O 0.007 5.993 4 C -0.018 4.018 5 C 0.364 3.636 6 O -0.412 6.412 7 N -0.281 5.281 8 C -0.006 4.006 9 C -0.154 4.154 10 C 0.049 3.951 11 H 0.054 0.946 12 C -0.115 4.115 13 H 0.151 0.849 14 C -0.169 4.169 15 C 0.057 3.943 16 N -0.333 5.333 17 C -0.337 4.337 18 H 0.109 0.891 19 C -0.264 4.264 20 N -0.604 5.604 21 Si 0.788 3.212 22 H -0.206 1.206 23 H -0.235 1.235 24 H -0.200 1.200 25 C 0.017 3.983 26 C -0.275 4.275 27 C 0.271 3.729 28 O -0.450 6.450 29 H 0.107 0.893 30 H 0.145 0.855 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.049 0.951 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.274 -1.365 -15.298 16.239 hybrid contribution -0.327 -0.446 1.787 1.870 sum -5.601 -1.811 -13.511 14.738 Atomic orbital electron populations 1.22601 0.68089 1.07583 1.05846 1.46466 1.07280 0.99452 1.67553 1.84391 1.14834 1.20257 1.79867 1.23156 0.82092 0.95866 1.00678 1.17103 0.85458 0.82233 0.78848 1.90821 1.19488 1.79133 1.51763 1.46428 1.08583 1.04677 1.68381 1.21033 0.78885 0.98519 1.02123 1.21220 1.00225 0.91934 1.02062 1.20579 0.93658 0.97139 0.83696 0.94569 1.22518 0.96460 0.92571 0.99920 0.84882 1.23207 0.98203 1.00990 0.94455 1.21029 0.84013 0.96364 0.92859 1.44605 1.05281 1.79708 1.03709 1.19251 0.89329 1.35887 0.89214 0.89064 1.25475 0.98302 1.03914 0.98669 1.70165 1.21155 1.57392 1.11713 0.85438 0.79399 0.78438 0.77876 1.20597 1.23493 1.20045 1.20515 0.85518 0.90577 1.01693 1.23404 0.99952 0.93452 1.10689 1.18385 0.87121 0.85565 0.81841 1.90917 1.79701 1.17147 1.57236 0.89290 0.85522 0.86779 0.92905 0.88796 0.90273 0.87895 0.90570 0.90146 0.98009 0.98031 0.95140 0.90066 0.94194 0.78515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 11.22 127.77 1.43 2.81 16 2 N -0.45 -11.04 3.68 -492.72 -1.82 -12.86 16 3 O 0.02 0.46 7.18 70.44 0.51 0.97 16 4 C 0.04 1.22 6.78 24.47 0.17 1.39 16 5 C 0.58 19.17 7.54 86.90 0.66 19.82 16 6 O -0.53 -20.18 16.47 -3.69 -0.06 -20.24 16 7 N -0.55 -17.08 3.19 -842.19 -2.69 -19.77 16 8 C 0.12 3.17 4.24 86.43 0.37 3.53 16 9 C -0.12 -2.91 5.10 29.56 0.15 -2.76 16 10 C 0.16 4.95 2.93 44.64 0.13 5.08 16 11 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 12 C -0.10 -2.56 3.80 -9.70 -0.04 -2.60 16 13 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.13 -4.14 6.14 32.29 0.20 -3.94 16 15 C 0.18 8.39 4.82 86.72 0.42 8.80 16 16 N -0.61 -26.89 3.04 -673.32 -2.05 -28.94 16 17 C -0.21 -10.25 8.84 84.03 0.74 -9.51 16 18 H 0.09 4.15 6.89 -2.91 -0.02 4.13 16 19 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 20 N -0.95 -56.49 10.41 21.65 0.23 -56.27 16 21 Si 0.96 44.29 29.55 68.60 2.03 46.32 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 C 0.14 4.22 4.61 86.56 0.40 4.62 16 26 C -0.25 -7.46 10.94 22.84 0.25 -7.21 16 27 C 0.47 14.57 8.02 85.25 0.68 15.25 16 28 O -0.57 -20.65 17.84 -5.26 -0.09 -20.75 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.13 1.05 8.14 -2.38 -0.02 1.04 16 31 H 0.11 1.50 8.03 -2.39 -0.02 1.48 16 32 H 0.05 1.76 6.71 -2.39 -0.02 1.75 16 33 H 0.09 1.97 6.43 -2.39 -0.02 1.96 16 34 H 0.08 2.04 7.36 -2.39 -0.02 2.02 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.08 2.25 7.81 -2.39 -0.02 2.23 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.00 0.09 7.13 -2.39 -0.02 0.07 16 39 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 40 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.08 2.12 8.04 -2.39 -0.02 2.10 16 42 H 0.04 1.50 6.57 -2.39 -0.02 1.49 16 43 H 0.20 5.42 8.06 -2.91 -0.02 5.40 16 Total: -1.00 -74.08 340.92 3.11 -70.97 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.03 Total: 8.67 kcal Atomic # 6 Polarization: 25.87 SS G_CDS: 6.02 Total: 31.90 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -6.33 Total: -117.84 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: 0.35 Total: -40.02 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -74.08 3.11 -70.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036700578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.236 kcal (2) G-P(sol) polarization free energy of solvation -74.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds