Wall clock time and date at job start Tue Mar 31 2020 13:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35345 * 117.00351 * 2 1 4 4 N 1.30552 * 125.45051 * 180.02562 * 3 2 1 5 5 C 1.36327 * 108.38790 * 180.02562 * 4 3 2 6 6 C 1.47357 * 126.41634 * 179.97438 * 5 4 3 7 7 O 1.21628 * 120.00716 * 173.20978 * 6 5 4 8 8 N 1.34779 * 120.00079 * 353.20659 * 6 5 4 9 9 C 1.46594 * 119.68150 * 352.80348 * 8 6 5 10 10 C 1.53960 * 110.57420 * 227.84351 * 9 8 6 11 11 C 1.51512 * 107.34737 * 308.94484 * 10 9 8 12 12 H 1.09007 * 108.80386 * 306.56000 * 11 10 9 13 13 C 1.55632 * 107.81733 * 65.01222 * 11 10 9 14 14 H 1.08992 * 111.68532 * 51.36497 * 13 11 10 15 15 C 1.53750 * 100.11509 * 169.28443 * 13 11 10 16 16 C 1.55285 * 101.83858 * 320.76010 * 15 13 11 17 17 N 1.45462 * 117.35038 * 181.91195 * 11 10 9 18 18 C 1.36933 * 126.40615 * 30.65352 * 17 11 10 19 19 H 1.07996 * 120.00054 * 4.22503 * 18 17 11 20 20 C 1.38814 * 119.99834 * 184.22744 * 18 17 11 21 21 N 1.31620 * 120.00394 * 7.89533 * 20 18 17 22 22 Si 1.86805 * 119.99754 * 187.90026 * 20 18 17 23 23 H 1.48501 * 109.47136 * 265.02034 * 22 20 18 24 24 H 1.48505 * 109.46872 * 145.02417 * 22 20 18 25 25 H 1.48498 * 109.47217 * 25.02655 * 22 20 18 26 26 C 1.48051 * 118.86930 * 173.68284 * 8 6 5 27 27 C 1.35926 * 107.17183 * 0.26118 * 5 4 3 28 28 O 1.34212 * 125.44506 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.46997 * 300.00697 * 1 2 3 30 30 H 1.09001 * 109.46895 * 60.00277 * 1 2 3 31 31 H 1.08992 * 109.47269 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.25802 * 107.56335 * 9 8 6 33 33 H 1.08998 * 109.22964 * 348.10678 * 9 8 6 34 34 H 1.09006 * 109.87914 * 189.48739 * 10 9 8 35 35 H 1.08991 * 109.87950 * 68.40893 * 10 9 8 36 36 H 1.09000 * 110.95033 * 202.62522 * 15 13 11 37 37 H 1.09000 * 110.95642 * 78.89817 * 15 13 11 38 38 H 1.09005 * 109.91794 * 263.13110 * 16 15 13 39 39 H 1.09004 * 110.08400 * 141.92390 * 16 15 13 40 40 H 0.97003 * 120.00272 * 180.02562 * 21 20 18 41 41 H 1.08994 * 111.09988 * 9.00665 * 26 8 6 42 42 H 1.09008 * 108.99905 * 247.46950 * 26 8 6 43 43 H 1.07994 * 126.45204 * 179.73642 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 7 3.3349 1.3977 -0.0005 5 6 3.5703 2.7405 0.0003 6 6 4.8893 3.3974 0.0006 7 8 4.9675 4.6048 -0.1232 8 7 6.0092 2.6603 0.1382 9 6 5.9042 1.2307 0.4450 10 6 6.8485 0.8546 1.6014 11 6 8.2230 1.3890 1.2542 12 1 8.5025 1.0242 0.2657 13 6 8.1363 2.9426 1.2239 14 1 7.6843 3.3385 2.1333 15 6 9.6307 3.2950 1.1436 16 6 10.2577 2.2438 2.0992 17 7 9.3025 1.1149 2.1898 18 6 9.4174 0.0161 2.9989 19 1 8.6950 -0.7837 2.9292 20 6 10.4624 -0.0698 3.9086 21 7 11.2507 0.9658 4.1051 22 14 10.7499 -1.6552 4.8538 23 1 10.0756 -1.5734 6.1744 24 1 12.2078 -1.8546 5.0540 25 1 10.1951 -2.7977 4.0845 26 6 7.3244 3.3246 -0.0061 27 6 2.3604 3.3599 0.0072 28 8 1.4228 2.3958 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 6.1713 0.6526 -0.4397 33 1 4.8778 0.9990 0.7292 34 1 6.8886 -0.2293 1.7096 35 1 6.4978 1.3078 2.5285 36 1 9.8124 4.3074 1.5044 37 1 10.0063 3.1715 0.1278 38 1 10.4092 2.6824 3.0856 39 1 11.2091 1.8940 1.6985 40 1 11.9812 0.9056 4.7405 41 1 7.2133 4.4076 -0.0593 42 1 7.8129 2.9529 -0.9069 43 1 2.1852 4.4255 0.0136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036780028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:01 Heat of formation + Delta-G solvation = 10.176710 kcal Electronic energy + Delta-G solvation = -27717.744473 eV Core-core repulsion = 23767.269653 eV Total energy + Delta-G solvation = -3950.474820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.73341 -40.06963 -39.14347 -38.13261 -35.56848 -34.95288 -32.58356 -31.46561 -30.48561 -29.49393 -28.06412 -27.83845 -25.21726 -24.38793 -22.99983 -22.61823 -22.08605 -20.46915 -19.94686 -19.38564 -18.29946 -17.82443 -17.28978 -16.74255 -16.27395 -15.73507 -15.56822 -15.53441 -15.05780 -14.84459 -14.30286 -13.95768 -13.79897 -13.53396 -13.15185 -12.91357 -12.70361 -12.60899 -12.39179 -12.26752 -11.61793 -11.49704 -11.45247 -11.26013 -10.99668 -10.77027 -10.60581 -10.37606 -10.17098 -10.00608 -9.86422 -9.67906 -9.52503 -9.32987 -8.98959 -8.59731 -8.38961 -6.76981 -5.64527 -3.00317 0.89731 1.60987 1.81532 2.44478 3.02953 3.25395 3.42967 3.48625 3.50571 4.17359 4.44990 4.54380 4.54616 4.63705 4.78321 4.96621 5.14432 5.19510 5.31970 5.38695 5.40605 5.57919 5.60035 5.72531 5.82438 5.95440 6.05886 6.13264 6.23229 6.32330 6.33380 6.44116 6.52247 6.65315 6.69361 6.75424 6.94336 7.16458 7.22154 7.52607 7.55166 7.71171 7.86981 8.15861 8.31738 9.24084 9.88634 10.56976 11.45076 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.003457 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.811152 B = 8097.216423 C = 9589.323251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.243 6.243 3 C 0.378 3.622 4 N -0.448 5.448 5 C -0.039 4.039 6 C 0.595 3.405 7 O -0.545 6.545 8 N -0.585 5.585 9 C 0.092 3.908 10 C -0.128 4.128 11 C 0.167 3.833 12 H 0.020 0.980 13 C -0.124 4.124 14 H 0.080 0.920 15 C -0.134 4.134 16 C 0.169 3.831 17 N -0.594 5.594 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.126 3.874 27 C 0.000 4.000 28 O -0.227 6.227 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.027 0.973 40 H 0.251 0.749 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.301 2.776 -10.106 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.151 6.151 3 C 0.133 3.867 4 N -0.194 5.194 5 C -0.158 4.158 6 C 0.381 3.619 7 O -0.424 6.424 8 N -0.316 5.316 9 C -0.031 4.031 10 C -0.167 4.167 11 C 0.058 3.942 12 H 0.037 0.963 13 C -0.145 4.145 14 H 0.098 0.902 15 C -0.173 4.173 16 C 0.044 3.956 17 N -0.318 5.318 18 C -0.351 4.351 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.004 3.996 27 C -0.072 4.072 28 O -0.118 6.118 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -20.642 2.532 -10.008 23.080 hybrid contribution -0.493 -0.445 0.604 0.897 sum -21.135 2.088 -9.404 23.226 Atomic orbital electron populations 1.23303 0.75164 1.05693 1.02955 1.86409 1.23626 1.15906 1.89144 1.23756 0.85891 0.79487 0.97557 1.71272 1.08627 1.15498 1.24024 1.21773 0.96005 0.88222 1.09758 1.16823 0.82049 0.85712 0.77297 1.90802 1.86356 1.12913 1.52281 1.48283 1.05490 1.10524 1.67256 1.22578 1.03788 0.78411 0.98291 1.21899 0.95643 1.01693 0.97480 1.20717 0.88528 0.91452 0.93462 0.96260 1.22665 0.95546 0.99039 0.97212 0.90209 1.22681 0.94293 0.99947 1.00334 1.21639 0.90928 0.85765 0.97242 1.44228 1.20421 1.21971 1.45161 1.19009 1.09317 0.94608 1.12159 0.90388 1.24785 0.98754 0.97707 0.99339 1.69933 1.20410 1.28233 1.38201 0.86152 0.77191 0.82950 0.79810 1.21766 1.21724 1.20658 1.21767 0.81046 0.98580 0.98166 1.24924 0.84834 0.93731 1.03750 1.84379 1.39594 1.15891 1.71926 0.91383 0.91442 0.86283 0.91938 0.85601 0.90620 0.91764 0.92020 0.92434 0.91266 0.95476 0.93864 0.88845 0.91246 0.74797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.73 101.05 1.08 1.19 16 2 O -0.24 -2.27 10.55 -40.96 -0.43 -2.70 16 3 C 0.38 4.23 8.98 52.22 0.47 4.69 16 4 N -0.45 -6.05 7.85 -11.72 -0.09 -6.14 16 5 C -0.04 -0.52 6.61 -82.99 -0.55 -1.07 16 6 C 0.59 9.36 7.63 -12.55 -0.10 9.27 16 7 O -0.54 -9.43 16.22 5.25 0.09 -9.35 16 8 N -0.59 -9.42 3.03 -173.50 -0.52 -9.95 16 9 C 0.09 1.46 5.86 -3.49 -0.02 1.44 16 10 C -0.13 -2.39 5.50 -26.98 -0.15 -2.54 16 11 C 0.17 3.49 2.57 -67.84 -0.17 3.31 16 12 H 0.02 0.42 7.98 -51.92 -0.41 0.01 16 13 C -0.12 -2.32 2.84 -89.21 -0.25 -2.57 16 14 H 0.08 1.62 8.13 -51.93 -0.42 1.20 16 15 C -0.13 -2.54 6.53 -25.13 -0.16 -2.71 16 16 C 0.17 4.13 5.57 -1.92 -0.01 4.12 16 17 N -0.59 -15.19 3.35 -162.93 -0.55 -15.74 16 18 C -0.22 -6.19 9.84 -15.06 -0.15 -6.34 16 19 H 0.08 2.09 7.28 -52.49 -0.38 1.71 16 20 C -0.01 -0.28 5.46 -17.43 -0.10 -0.37 16 21 N -0.92 -27.26 10.54 55.49 0.58 -26.67 16 22 Si 0.91 22.29 29.56 -169.99 -5.03 17.26 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.13 2.02 5.98 -3.57 -0.02 2.00 16 27 C 0.00 0.00 11.94 29.90 0.36 0.35 16 28 O -0.23 -2.18 10.20 -17.78 -0.18 -2.36 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.13 1.96 4.24 -58.21 -0.25 1.71 16 34 H 0.08 1.43 7.64 -51.93 -0.40 1.03 16 35 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 38 H 0.07 1.90 6.76 -51.93 -0.35 1.54 16 39 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.09 1.48 6.99 -51.93 -0.36 1.12 16 42 H 0.07 1.05 8.12 -51.92 -0.42 0.63 16 43 H 0.24 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -33.48 347.22 -6.60 -40.08 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.93 Total: -0.45 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 0.23 Total: 10.79 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.58 Total: -58.51 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.53 Total: -14.41 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.48 -6.60 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036780028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.255 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds