Wall clock time and date at job start Tue Mar 31 2020 13:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35353 * 116.99618 * 2 1 4 4 N 1.30552 * 125.44696 * 179.97438 * 3 2 1 5 5 C 1.36330 * 108.38174 * 180.02562 * 4 3 2 6 6 C 1.47370 * 126.40816 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00015 * 187.47234 * 6 5 4 8 8 N 1.34775 * 120.00149 * 7.47188 * 6 5 4 9 9 C 1.46776 * 120.19408 * 177.50535 * 8 6 5 10 10 C 1.52962 * 107.45617 * 234.23577 * 9 8 6 11 11 C 1.53011 * 109.94581 * 298.79706 * 10 9 8 12 12 H 1.08999 * 110.43184 * 291.09845 * 11 10 9 13 13 C 1.52568 * 111.96800 * 54.61076 * 11 10 9 14 14 H 1.09001 * 107.36581 * 202.44982 * 13 11 10 15 15 C 1.54380 * 103.70434 * 89.17530 * 13 11 10 16 16 C 1.55269 * 100.52824 * 38.62553 * 15 13 11 17 17 N 1.47499 * 105.09520 * 323.72251 * 16 15 13 18 18 C 1.36939 * 125.59434 * 200.37431 * 17 16 15 19 19 H 1.08000 * 120.00193 * 173.87200 * 18 17 16 20 20 C 1.38814 * 119.99988 * 353.86984 * 18 17 16 21 21 N 1.31616 * 119.99794 * 4.73114 * 20 18 17 22 22 Si 1.86797 * 120.00092 * 184.73182 * 20 18 17 23 23 H 1.48495 * 109.47535 * 94.99765 * 22 20 18 24 24 H 1.48505 * 109.47091 * 214.99752 * 22 20 18 25 25 H 1.48501 * 109.47159 * 334.99188 * 22 20 18 26 26 C 1.44728 * 119.88611 * 358.24861 * 8 6 5 27 27 C 1.35912 * 107.17494 * 0.24084 * 5 4 3 28 28 O 1.34200 * 125.44793 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47224 * 299.99597 * 1 2 3 30 30 H 1.08997 * 109.47262 * 60.00282 * 1 2 3 31 31 H 1.09007 * 109.46690 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.85931 * 114.74812 * 9 8 6 33 33 H 1.08992 * 109.86057 * 353.72722 * 9 8 6 34 34 H 1.08995 * 109.39410 * 178.64563 * 10 9 8 35 35 H 1.08999 * 109.30946 * 58.88645 * 10 9 8 36 36 H 1.08999 * 111.21208 * 156.46108 * 15 13 11 37 37 H 1.09004 * 111.20788 * 280.79493 * 15 13 11 38 38 H 1.09004 * 110.31068 * 82.59561 * 16 15 13 39 39 H 1.09001 * 110.31040 * 204.77239 * 16 15 13 40 40 H 0.97007 * 119.99945 * 180.02562 * 21 20 18 41 41 H 1.09005 * 109.34184 * 20.99354 * 26 8 6 42 42 H 1.08997 * 106.99218 * 264.01127 * 26 8 6 43 43 H 1.08001 * 126.45119 * 179.72477 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3348 1.3979 0.0005 5 6 3.5699 2.7408 0.0009 6 6 4.8890 3.3978 0.0020 7 8 4.9677 4.6037 0.1392 8 7 6.0083 2.6624 -0.1490 9 6 7.3205 3.3179 -0.2034 10 6 8.0103 2.8579 -1.4888 11 6 8.2052 1.3405 -1.4624 12 1 8.9444 1.0648 -0.7103 13 6 6.8936 0.6008 -1.2166 14 1 7.1442 -0.3819 -0.8171 15 6 6.3239 0.3852 -2.6352 16 6 7.6262 0.0670 -3.4185 17 7 8.6592 0.9277 -2.8122 18 6 9.8427 1.2873 -3.4000 19 1 10.4910 2.0022 -2.9153 20 6 10.2090 0.7328 -4.6187 21 7 9.3785 -0.0663 -5.2543 22 14 11.8805 1.1209 -5.3567 23 1 12.8456 0.0555 -4.9842 24 1 11.7650 1.1890 -6.8356 25 1 12.3599 2.4268 -4.8371 26 6 5.9145 1.2236 -0.2741 27 6 2.3601 3.3600 0.0061 28 8 1.4226 2.3958 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 7.9163 3.0260 0.6615 33 1 7.1934 4.4003 -0.2182 34 1 8.9811 3.3461 -1.5732 35 1 7.3933 3.1286 -2.3456 36 1 5.6334 -0.4579 -2.6589 37 1 5.8489 1.2913 -3.0113 38 1 7.8921 -0.9835 -3.2999 39 1 7.5018 0.3098 -4.4739 40 1 9.6346 -0.4541 -6.1058 41 1 4.9082 0.9540 -0.5948 42 1 6.0789 0.8061 0.7193 43 1 2.1847 4.4257 0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036780029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:05 Heat of formation + Delta-G solvation = 11.034457 kcal Electronic energy + Delta-G solvation = -28028.063121 eV Core-core repulsion = 24077.625496 eV Total energy + Delta-G solvation = -3950.437625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.70653 -40.12832 -39.11103 -38.13099 -35.47184 -35.02014 -32.54197 -31.74929 -30.32914 -29.40565 -28.02659 -27.80595 -25.50757 -24.20035 -23.23816 -22.91727 -21.98977 -20.46346 -20.12988 -18.98885 -17.83067 -17.73949 -17.25929 -16.77616 -16.68049 -15.81371 -15.56765 -15.49545 -15.05970 -14.76852 -14.44024 -13.81462 -13.72375 -13.61475 -13.08108 -12.92956 -12.68625 -12.37370 -12.30394 -12.11951 -11.99826 -11.46560 -11.28289 -11.15877 -10.98786 -10.79740 -10.70240 -10.47782 -10.13265 -10.04967 -9.83397 -9.55756 -9.47762 -9.34946 -8.96522 -8.58022 -8.26946 -6.76846 -5.63379 -3.00421 0.92664 1.64126 1.85193 2.47628 3.07456 3.29356 3.43226 3.48435 3.50263 4.21814 4.47927 4.52748 4.57756 4.66928 4.81595 4.99603 5.15333 5.25724 5.35275 5.38478 5.46150 5.56822 5.61310 5.67436 5.86226 5.99913 6.08018 6.12383 6.21826 6.35833 6.41847 6.48691 6.64720 6.68071 6.75268 6.84725 7.04646 7.17784 7.26716 7.60064 7.62888 7.67261 7.90000 8.19163 8.36012 9.26755 9.87463 10.54850 11.44394 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.003420 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.138061 B = 8186.230501 C = 9129.268193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.243 6.243 3 C 0.379 3.621 4 N -0.447 5.447 5 C -0.038 4.038 6 C 0.596 3.404 7 O -0.545 6.545 8 N -0.575 5.575 9 C 0.110 3.890 10 C -0.138 4.138 11 C 0.169 3.831 12 H 0.040 0.960 13 C -0.106 4.106 14 H 0.070 0.930 15 C -0.137 4.137 16 C 0.166 3.834 17 N -0.601 5.601 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.098 3.902 27 C 0.000 4.000 28 O -0.226 6.226 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.085 0.915 40 H 0.251 0.749 41 H 0.133 0.867 42 H 0.050 0.950 43 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.246 2.207 12.304 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.151 6.151 3 C 0.134 3.866 4 N -0.193 5.193 5 C -0.157 4.157 6 C 0.383 3.617 7 O -0.424 6.424 8 N -0.305 5.305 9 C -0.012 4.012 10 C -0.178 4.178 11 C 0.062 3.938 12 H 0.058 0.942 13 C -0.125 4.125 14 H 0.089 0.911 15 C -0.176 4.176 16 C 0.041 3.959 17 N -0.325 5.325 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.207 1.207 26 C -0.025 4.025 27 C -0.072 4.072 28 O -0.118 6.118 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.150 0.850 42 H 0.069 0.931 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -18.615 2.001 12.167 22.329 hybrid contribution 0.220 0.467 -0.474 0.701 sum -18.395 2.468 11.693 21.936 Atomic orbital electron populations 1.23305 0.75187 1.05693 1.02945 1.86413 1.23611 1.15894 1.89135 1.23783 0.85902 0.79477 0.97464 1.71266 1.08557 1.15397 1.24125 1.21731 0.95917 0.88246 1.09757 1.16735 0.81886 0.85618 0.77441 1.90799 1.86294 1.13111 1.52194 1.47391 1.06064 1.08326 1.68687 1.21767 0.81900 0.98426 0.99107 1.22382 1.00429 0.99172 0.95860 1.20646 0.92458 0.91414 0.89259 0.94219 1.21154 0.95461 0.99617 0.96312 0.91121 1.23001 0.99427 1.00079 0.95081 1.21669 0.83452 0.92881 0.97866 1.44917 1.18723 1.57313 1.11592 1.19038 0.94416 1.19595 1.01823 0.90566 1.24792 0.98391 0.99531 0.97913 1.69926 1.34429 1.36117 1.16432 0.86117 0.83813 0.77677 0.78293 1.21753 1.21866 1.20676 1.21271 1.03982 0.78244 0.99002 1.24898 0.84811 0.93719 1.03810 1.84374 1.39588 1.15889 1.71902 0.91467 0.91368 0.86282 0.91362 0.89274 0.91097 0.91534 0.92219 0.92666 0.96443 0.89709 0.93882 0.85032 0.93140 0.74808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.73 101.05 1.08 1.19 16 2 O -0.24 -2.33 10.55 -40.98 -0.43 -2.76 16 3 C 0.38 4.33 8.98 52.22 0.47 4.80 16 4 N -0.45 -6.16 7.77 -11.71 -0.09 -6.25 16 5 C -0.04 -0.52 6.66 -82.99 -0.55 -1.07 16 6 C 0.60 9.56 7.66 -12.54 -0.10 9.46 16 7 O -0.55 -9.58 16.28 5.26 0.09 -9.50 16 8 N -0.58 -9.34 2.99 -178.26 -0.53 -9.88 16 9 C 0.11 1.77 6.44 -3.91 -0.03 1.74 16 10 C -0.14 -2.62 5.25 -26.74 -0.14 -2.76 16 11 C 0.17 3.51 3.36 -67.17 -0.23 3.28 16 12 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.11 -1.93 2.51 -91.85 -0.23 -2.16 16 14 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 15 C -0.14 -2.71 6.43 -24.81 -0.16 -2.87 16 16 C 0.17 4.10 5.58 -2.29 -0.01 4.09 16 17 N -0.60 -15.29 3.08 -162.35 -0.50 -15.79 16 18 C -0.22 -6.11 9.94 -15.06 -0.15 -6.26 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -27.18 10.27 55.49 0.57 -26.61 16 22 Si 0.91 22.32 29.56 -169.99 -5.02 17.30 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.10 1.57 5.38 -6.72 -0.04 1.53 16 27 C 0.00 0.00 11.94 29.90 0.36 0.35 16 28 O -0.23 -2.24 10.20 -17.74 -0.18 -2.42 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.12 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.43 6.99 -51.93 -0.36 1.06 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 2.36 6.40 -51.93 -0.33 2.02 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.13 2.11 3.96 -60.92 -0.24 1.87 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.24 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -33.29 347.61 -6.66 -39.95 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.98 Total: -0.22 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 0.19 Total: 10.94 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.55 Total: -58.53 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.53 Total: -14.67 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.29 -6.66 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036780029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.982 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds