Wall clock time and date at job start Tue Mar 31 2020 13:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35353 * 116.99618 * 2 1 4 4 N 1.30552 * 125.44696 * 179.97438 * 3 2 1 5 5 C 1.36330 * 108.38174 * 180.02562 * 4 3 2 6 6 C 1.47370 * 126.40816 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00015 * 187.47234 * 6 5 4 8 8 N 1.34775 * 120.00149 * 7.47188 * 6 5 4 9 9 C 1.46776 * 120.19408 * 177.50535 * 8 6 5 10 10 C 1.52962 * 107.45617 * 234.23577 * 9 8 6 11 11 C 1.53011 * 109.94581 * 298.79706 * 10 9 8 12 12 H 1.08999 * 110.43184 * 291.09845 * 11 10 9 13 13 C 1.52568 * 111.96800 * 54.61076 * 11 10 9 14 14 H 1.09001 * 107.36581 * 202.44982 * 13 11 10 15 15 C 1.54380 * 103.70434 * 89.17530 * 13 11 10 16 16 C 1.55269 * 100.52824 * 38.62553 * 15 13 11 17 17 N 1.47499 * 105.09520 * 323.72251 * 16 15 13 18 18 C 1.36939 * 125.59434 * 200.37431 * 17 16 15 19 19 H 1.08000 * 120.00193 * 173.87200 * 18 17 16 20 20 C 1.38814 * 119.99988 * 353.86984 * 18 17 16 21 21 N 1.31616 * 119.99794 * 4.73114 * 20 18 17 22 22 Si 1.86797 * 120.00092 * 184.73182 * 20 18 17 23 23 H 1.48495 * 109.47535 * 94.99765 * 22 20 18 24 24 H 1.48505 * 109.47091 * 214.99752 * 22 20 18 25 25 H 1.48501 * 109.47159 * 334.99188 * 22 20 18 26 26 C 1.44728 * 119.88611 * 358.24861 * 8 6 5 27 27 C 1.35912 * 107.17494 * 0.24084 * 5 4 3 28 28 O 1.34200 * 125.44793 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47224 * 299.99597 * 1 2 3 30 30 H 1.08997 * 109.47262 * 60.00282 * 1 2 3 31 31 H 1.09007 * 109.46690 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.85931 * 114.74812 * 9 8 6 33 33 H 1.08992 * 109.86057 * 353.72722 * 9 8 6 34 34 H 1.08995 * 109.39410 * 178.64563 * 10 9 8 35 35 H 1.08999 * 109.30946 * 58.88645 * 10 9 8 36 36 H 1.08999 * 111.21208 * 156.46108 * 15 13 11 37 37 H 1.09004 * 111.20788 * 280.79493 * 15 13 11 38 38 H 1.09004 * 110.31068 * 82.59561 * 16 15 13 39 39 H 1.09001 * 110.31040 * 204.77239 * 16 15 13 40 40 H 0.97007 * 119.99945 * 180.02562 * 21 20 18 41 41 H 1.09005 * 109.34184 * 20.99354 * 26 8 6 42 42 H 1.08997 * 106.99218 * 264.01127 * 26 8 6 43 43 H 1.08001 * 126.45119 * 179.72477 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3348 1.3979 0.0005 5 6 3.5699 2.7408 0.0009 6 6 4.8890 3.3978 0.0020 7 8 4.9677 4.6037 0.1392 8 7 6.0083 2.6624 -0.1490 9 6 7.3205 3.3179 -0.2034 10 6 8.0103 2.8579 -1.4888 11 6 8.2052 1.3405 -1.4624 12 1 8.9444 1.0648 -0.7103 13 6 6.8936 0.6008 -1.2166 14 1 7.1442 -0.3819 -0.8171 15 6 6.3239 0.3852 -2.6352 16 6 7.6262 0.0670 -3.4185 17 7 8.6592 0.9277 -2.8122 18 6 9.8427 1.2873 -3.4000 19 1 10.4910 2.0022 -2.9153 20 6 10.2090 0.7328 -4.6187 21 7 9.3785 -0.0663 -5.2543 22 14 11.8805 1.1209 -5.3567 23 1 12.8456 0.0555 -4.9842 24 1 11.7650 1.1890 -6.8356 25 1 12.3599 2.4268 -4.8371 26 6 5.9145 1.2236 -0.2741 27 6 2.3601 3.3600 0.0061 28 8 1.4226 2.3958 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 7.9163 3.0260 0.6615 33 1 7.1934 4.4003 -0.2182 34 1 8.9811 3.3461 -1.5732 35 1 7.3933 3.1286 -2.3456 36 1 5.6334 -0.4579 -2.6589 37 1 5.8489 1.2913 -3.0113 38 1 7.8921 -0.9835 -3.2999 39 1 7.5018 0.3098 -4.4739 40 1 9.6346 -0.4541 -6.1058 41 1 4.9082 0.9540 -0.5948 42 1 6.0789 0.8061 0.7193 43 1 2.1847 4.4257 0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036780029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:04 Heat of formation + Delta-G solvation = -12.823356 kcal Electronic energy + Delta-G solvation = -28029.097674 eV Core-core repulsion = 24077.625496 eV Total energy + Delta-G solvation = -3951.472178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.55580 -41.45147 -39.86304 -39.55297 -36.85990 -36.09145 -34.43780 -33.26446 -31.45685 -30.95089 -29.70905 -28.27881 -27.05168 -25.75129 -24.71170 -23.93880 -23.12450 -22.07373 -21.52679 -20.14063 -19.06894 -18.68810 -18.57281 -18.44491 -17.43195 -17.03924 -16.80496 -16.55079 -16.29863 -16.07653 -15.89194 -15.58058 -15.01510 -14.66016 -14.42501 -14.34509 -14.12199 -13.74396 -13.54554 -13.21998 -13.05686 -12.94945 -12.93460 -12.70369 -12.66399 -12.41504 -12.06274 -11.98569 -11.82641 -11.59569 -11.53473 -11.38762 -11.15282 -10.72525 -10.68028 -9.87913 -9.50350 -8.83926 -7.78198 -5.17128 0.04382 0.89047 0.92306 1.46397 1.47924 1.56640 1.70334 1.97102 2.18496 2.50679 3.20170 3.35102 3.56165 3.76239 3.79144 3.95088 4.05320 4.07986 4.23384 4.24073 4.27832 4.29089 4.41723 4.47330 4.55111 4.62076 4.68352 4.69202 4.76630 4.85129 4.91363 5.05059 5.15753 5.19063 5.35175 5.49433 5.55230 5.58585 5.68393 5.77650 5.81337 6.26642 6.28226 6.49577 6.99104 7.12842 7.80300 8.46763 9.28367 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.003420 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.138061 B = 8186.230501 C = 9129.268193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.255 6.255 3 C 0.384 3.616 4 N -0.477 5.477 5 C -0.076 4.076 6 C 0.597 3.403 7 O -0.566 6.566 8 N -0.583 5.583 9 C 0.120 3.880 10 C -0.125 4.125 11 C 0.163 3.837 12 H 0.043 0.957 13 C -0.094 4.094 14 H 0.076 0.924 15 C -0.119 4.119 16 C 0.171 3.829 17 N -0.621 5.621 18 C -0.228 4.228 19 H 0.081 0.919 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.976 3.024 23 H -0.289 1.289 24 H -0.297 1.297 25 H -0.268 1.268 26 C 0.107 3.893 27 C 0.033 3.967 28 O -0.214 6.214 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.048 0.952 38 H -0.008 1.008 39 H 0.047 0.953 40 H 0.244 0.756 41 H 0.139 0.861 42 H 0.065 0.935 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.907 2.809 14.009 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.163 6.163 3 C 0.138 3.862 4 N -0.224 5.224 5 C -0.193 4.193 6 C 0.386 3.614 7 O -0.447 6.447 8 N -0.312 5.312 9 C -0.003 4.003 10 C -0.165 4.165 11 C 0.057 3.943 12 H 0.061 0.939 13 C -0.114 4.114 14 H 0.095 0.905 15 C -0.158 4.158 16 C 0.046 3.954 17 N -0.346 5.346 18 C -0.358 4.358 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.601 5.601 22 Si 0.804 3.196 23 H -0.216 1.216 24 H -0.224 1.224 25 H -0.193 1.193 26 C -0.016 4.016 27 C -0.040 4.040 28 O -0.105 6.105 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.010 0.990 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -20.299 2.610 13.911 24.746 hybrid contribution 0.610 0.266 -0.980 1.185 sum -19.689 2.876 12.931 23.730 Atomic orbital electron populations 1.23700 0.72679 1.07709 1.03913 1.86438 1.26115 1.14963 1.88810 1.23763 0.85679 0.80253 0.96492 1.71016 1.10106 1.15614 1.25648 1.21467 0.95702 0.88788 1.13317 1.16988 0.82537 0.85401 0.76520 1.90777 1.86779 1.13928 1.53196 1.47438 1.06257 1.08404 1.69122 1.21655 0.82113 0.98535 0.97971 1.22152 1.00003 0.97722 0.96601 1.20881 0.93688 0.92700 0.87009 0.93929 1.21103 0.94575 0.99919 0.95791 0.90547 1.22810 0.97218 1.00577 0.95167 1.21414 0.85907 0.91403 0.96693 1.45205 1.18460 1.57320 1.13575 1.19402 0.95229 1.19209 1.01921 0.90075 1.25613 1.01824 1.00100 0.98678 1.70161 1.35965 1.37436 1.16506 0.85091 0.79656 0.77882 0.76931 1.21618 1.22368 1.19270 1.21184 1.03328 0.78162 0.98917 1.25508 0.83737 0.94758 0.99961 1.84424 1.39038 1.15507 1.71482 0.90248 0.90630 0.83827 0.89295 0.89045 0.91659 0.94210 0.89877 0.93291 0.99009 0.93452 0.94602 0.84456 0.91626 0.71673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.73 113.37 1.22 1.30 16 2 O -0.26 -4.31 10.55 -64.22 -0.68 -4.99 16 3 C 0.38 7.91 8.98 130.43 1.17 9.08 16 4 N -0.48 -12.25 7.77 -419.39 -3.26 -15.51 16 5 C -0.08 -1.92 6.66 40.31 0.27 -1.65 16 6 C 0.60 18.22 7.66 86.65 0.66 18.89 16 7 O -0.57 -19.08 16.28 -4.10 -0.07 -19.15 16 8 N -0.58 -18.09 2.99 -836.13 -2.50 -20.59 16 9 C 0.12 3.69 6.44 86.31 0.56 4.24 16 10 C -0.12 -4.70 5.25 30.59 0.16 -4.54 16 11 C 0.16 6.73 3.36 44.51 0.15 6.88 16 12 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 13 C -0.09 -3.36 2.51 -11.59 -0.03 -3.39 16 14 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 15 C -0.12 -4.71 6.43 31.84 0.20 -4.51 16 16 C 0.17 8.75 5.58 86.97 0.49 9.24 16 17 N -0.62 -32.33 3.08 -667.57 -2.05 -34.38 16 18 C -0.23 -12.91 9.94 84.03 0.84 -12.08 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 20 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 21 N -0.95 -58.21 10.27 21.65 0.22 -57.99 16 22 Si 0.98 46.73 29.56 68.60 2.03 48.76 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.11 3.24 5.38 85.59 0.46 3.70 16 27 C 0.03 0.59 11.94 67.28 0.80 1.39 16 28 O -0.21 -3.59 10.20 18.95 0.19 -3.40 16 29 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.14 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.09 2.82 6.99 -2.39 -0.02 2.80 16 34 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.88 8.14 -2.39 -0.02 2.87 16 37 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 38 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 39 H 0.05 2.77 6.40 -2.39 -0.02 2.75 16 40 H 0.24 14.59 8.31 -92.70 -0.77 13.81 16 41 H 0.14 4.18 3.96 -20.15 -0.08 4.10 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.27 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -74.03 347.61 2.26 -71.78 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.96 Total: 10.49 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 7.41 Total: 24.99 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -7.59 Total: -128.48 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.55 Total: -27.53 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.03 2.26 -71.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036780029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.955 kcal (2) G-P(sol) polarization free energy of solvation -74.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds