Wall clock time and date at job start Tue Mar 31 2020 13:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35679 * 117.00242 * 2 1 4 4 C 1.38746 * 119.58613 * 179.97438 * 3 2 1 5 5 C 1.39722 * 119.08118 * 179.97438 * 4 3 2 6 6 C 1.48171 * 120.86122 * 180.02562 * 5 4 3 7 7 O 1.21507 * 120.00438 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99714 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99635 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47001 * 180.02562 * 9 8 6 11 11 H 1.08996 * 112.97031 * 53.31751 * 10 9 8 12 12 C 1.53946 * 113.77022 * 185.00333 * 10 9 8 13 13 C 1.53948 * 86.29225 * 137.90585 * 12 10 9 14 14 N 1.47584 * 113.76568 * 281.49515 * 10 9 8 15 15 C 1.36941 * 134.49563 * 41.05560 * 14 10 9 16 16 H 1.08001 * 119.99287 * 359.97438 * 15 14 10 17 17 C 1.38809 * 120.00115 * 180.02562 * 15 14 10 18 18 N 1.31621 * 120.00036 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46978 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47374 * 120.00237 * 19 17 15 22 22 H 1.48498 * 109.47308 * 240.00111 * 19 17 15 23 23 C 1.39722 * 118.27429 * 0.27272 * 5 4 3 24 24 C 1.38746 * 119.07864 * 359.46403 * 23 5 4 25 25 O 1.35677 * 119.58415 * 180.29628 * 24 23 5 26 26 C 1.42908 * 116.99793 * 180.25693 * 25 24 23 27 27 N 1.32256 * 119.58353 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47050 * 300.00116 * 1 2 3 29 29 H 1.08994 * 109.46637 * 59.99720 * 1 2 3 30 30 H 1.08991 * 109.47055 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.45648 * 359.97438 * 4 3 2 32 32 H 0.96995 * 120.00015 * 359.72530 * 8 6 5 33 33 H 1.09005 * 109.47306 * 299.99972 * 9 8 6 34 34 H 1.09002 * 109.47518 * 60.00210 * 9 8 6 35 35 H 1.09006 * 113.73557 * 252.24630 * 12 10 9 36 36 H 1.08991 * 113.74299 * 23.44771 * 12 10 9 37 37 H 1.08997 * 113.76965 * 90.69239 * 13 12 10 38 38 H 1.08994 * 113.76772 * 222.09274 * 13 12 10 39 39 H 0.97004 * 120.00072 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.46506 * 179.72801 * 23 5 4 41 41 H 1.08990 * 109.47301 * 59.99786 * 26 25 24 42 42 H 1.09003 * 109.46611 * 179.97438 * 26 25 24 43 43 H 1.09007 * 109.46600 * 299.99324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4311 1.2714 0.0005 5 6 4.0545 2.5219 0.0000 6 6 5.5319 2.6346 0.0000 7 8 6.2178 1.6317 0.0009 8 7 6.1150 3.8498 -0.0011 9 6 7.5757 3.9613 -0.0006 10 6 7.9744 5.4384 -0.0013 11 1 7.5062 6.0058 0.8029 12 6 9.4912 5.6716 -0.1237 13 6 9.1368 6.8058 -1.1025 14 7 7.8701 6.0819 -1.3254 15 6 6.9626 6.0287 -2.3495 16 1 6.0886 5.4000 -2.2643 17 6 7.1665 6.7821 -3.4974 18 7 8.2325 7.5471 -3.6018 19 14 5.9290 6.7089 -4.8947 20 1 4.8276 5.7810 -4.5324 21 1 5.3739 8.0650 -5.1358 22 1 6.6012 6.2231 -6.1265 23 6 3.2485 3.6632 0.0048 24 6 1.8690 3.5146 -0.0015 25 8 1.0767 4.6160 -0.0030 26 6 -0.3358 4.3990 -0.0039 27 7 1.3167 2.3128 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0200 0.3660 0.0014 32 1 5.5675 4.6504 -0.0059 33 1 7.9767 3.4775 0.8902 34 1 7.9775 3.4756 -0.8898 35 1 9.9577 6.0178 0.7986 36 1 10.0268 4.8424 -0.5856 37 1 9.0096 7.7763 -0.6229 38 1 9.7807 6.8452 -1.9810 39 1 8.3752 8.0733 -4.4041 40 1 3.6931 4.6474 0.0089 41 1 -0.6176 3.8368 0.8863 42 1 -0.8509 5.3596 -0.0046 43 1 -0.6162 3.8352 -0.8937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038462052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:38 Heat of formation + Delta-G solvation = -8.661997 kcal Electronic energy + Delta-G solvation = -26996.015515 eV Core-core repulsion = 23044.723788 eV Total energy + Delta-G solvation = -3951.291727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20296 -39.48609 -39.10326 -37.98552 -36.99858 -34.28048 -32.67612 -32.16190 -30.69067 -28.43801 -27.97632 -27.62473 -26.74995 -24.22951 -23.46859 -23.38130 -22.01517 -20.63433 -19.42648 -18.78075 -18.12338 -16.96551 -16.60567 -16.47983 -16.46382 -15.76334 -15.75016 -15.35544 -15.31341 -15.04847 -14.63311 -14.11910 -13.89415 -13.72293 -13.43655 -13.29043 -12.95660 -12.49715 -12.33076 -11.93960 -11.83919 -11.83314 -11.45633 -11.14205 -11.04193 -10.86406 -10.75286 -10.55776 -10.37450 -10.07185 -9.98071 -9.80425 -9.74466 -9.42389 -8.81514 -8.69809 -8.38224 -6.91008 -5.77820 -3.10493 0.59170 1.01608 2.63550 2.86701 2.92803 3.35396 3.38470 3.44239 3.45716 3.71577 4.01621 4.41865 4.68262 4.80251 4.93688 4.97397 5.01284 5.02809 5.06612 5.10762 5.14240 5.30418 5.36060 5.38490 5.57802 5.62941 5.67950 5.88412 5.92236 6.00961 6.05415 6.28453 6.38197 6.59021 6.59726 6.64715 6.78901 7.12652 7.23479 7.39166 7.46839 7.58501 7.71825 7.97191 8.33910 9.02916 9.69966 10.57408 11.38819 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.003702 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.858996 B = 7562.571251 C = 8717.752826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.355 3.645 4 C -0.171 4.171 5 C -0.013 4.013 6 C 0.557 3.443 7 O -0.533 6.533 8 N -0.700 5.700 9 C 0.122 3.878 10 C 0.125 3.875 11 H 0.051 0.949 12 C -0.155 4.155 13 C 0.159 3.841 14 N -0.603 5.603 15 C -0.220 4.220 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C -0.193 4.193 24 C 0.359 3.641 25 O -0.299 6.299 26 C 0.040 3.960 27 N -0.584 5.584 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.405 0.595 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.152 0.848 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 -9.105 10.484 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.177 3.823 4 C -0.193 4.193 5 C -0.024 4.024 6 C 0.341 3.659 7 O -0.411 6.411 8 N -0.350 5.350 9 C -0.002 4.002 10 C 0.017 3.983 11 H 0.068 0.932 12 C -0.194 4.194 13 C 0.033 3.967 14 N -0.329 5.329 15 C -0.348 4.348 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.736 3.264 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C -0.215 4.215 24 C 0.181 3.819 25 O -0.206 6.206 26 C -0.055 4.055 27 N -0.324 5.324 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.175 0.825 32 H 0.241 0.759 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.169 0.831 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.376 -9.763 10.157 20.128 hybrid contribution -0.822 0.628 -0.894 1.367 sum -15.198 -9.135 9.263 20.006 Atomic orbital electron populations 1.22869 0.77170 1.03083 1.02371 1.86287 1.22922 1.23939 1.87646 1.19142 0.88662 0.83396 0.91095 1.20919 0.91372 0.99213 1.07771 1.19977 0.94094 0.92276 0.96006 1.17901 0.86178 0.84129 0.77652 1.90764 1.64122 1.36217 1.49966 1.45908 1.09058 1.07521 1.72561 1.21878 0.78058 0.98472 1.01823 1.22524 0.94764 0.90747 0.90276 0.93174 1.23771 0.94769 1.01234 0.99615 1.22203 0.87489 0.91678 0.95291 1.46095 1.25116 1.50033 1.11647 1.18979 1.01271 1.21816 0.92687 0.90326 1.24741 0.98094 0.99226 0.98153 1.69827 1.27459 1.31284 1.27976 0.86147 0.80470 0.77234 0.82549 1.20489 1.21756 1.21717 1.21115 0.90578 1.00405 1.09392 1.19129 0.88345 0.83736 0.90702 1.86319 1.19427 1.27348 1.87472 1.22879 0.77401 1.02948 1.02257 1.66610 1.41926 0.98572 1.25305 0.92338 0.92283 0.88455 0.82521 0.75933 0.91696 0.90524 0.92754 0.90438 0.95530 0.90783 0.93733 0.83054 0.92372 0.88371 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.37 16 2 O -0.30 -3.55 10.47 -18.74 -0.20 -3.74 16 3 C 0.35 4.72 7.48 -17.18 -0.13 4.59 16 4 C -0.17 -2.42 9.60 -38.84 -0.37 -2.80 16 5 C -0.01 -0.20 5.90 -104.71 -0.62 -0.82 16 6 C 0.56 9.47 7.80 -12.18 -0.09 9.37 16 7 O -0.53 -10.44 16.44 5.36 0.09 -10.36 16 8 N -0.70 -11.64 5.49 -61.15 -0.34 -11.97 16 9 C 0.12 2.13 5.54 -4.04 -0.02 2.11 16 10 C 0.12 2.31 4.33 -66.86 -0.29 2.02 16 11 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.15 -2.74 7.86 -25.80 -0.20 -2.95 16 13 C 0.16 3.57 7.52 -2.97 -0.02 3.54 16 14 N -0.60 -14.37 3.57 -170.74 -0.61 -14.98 16 15 C -0.22 -5.83 10.51 -15.06 -0.16 -5.99 16 16 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 17 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 18 N -0.92 -26.71 11.38 55.49 0.63 -26.08 16 19 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.19 -2.69 9.54 -38.84 -0.37 -3.06 16 24 C 0.36 4.87 7.48 -17.18 -0.13 4.74 16 25 O -0.30 -3.75 10.47 -18.73 -0.20 -3.95 16 26 C 0.04 0.35 10.38 101.05 1.05 1.40 16 27 N -0.58 -7.61 8.02 -13.45 -0.11 -7.72 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.16 2.17 7.74 -52.48 -0.41 1.76 16 32 H 0.40 6.35 6.61 -40.82 -0.27 6.08 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 40 H 0.15 1.96 6.53 -52.49 -0.34 1.62 16 41 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -32.44 368.18 -6.61 -39.05 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.00 Total: 3.88 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -0.41 Total: 13.30 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.42 Total: -60.75 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.30 Total: -18.05 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.44 -6.61 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038462052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.384 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds