Wall clock time and date at job start Tue Mar 31 2020 13:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35679 * 117.00242 * 2 1 4 4 C 1.38746 * 119.58613 * 179.97438 * 3 2 1 5 5 C 1.39722 * 119.08118 * 179.97438 * 4 3 2 6 6 C 1.48171 * 120.86122 * 180.02562 * 5 4 3 7 7 O 1.21507 * 120.00438 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99714 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99635 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47001 * 180.02562 * 9 8 6 11 11 H 1.08996 * 112.97031 * 53.31751 * 10 9 8 12 12 C 1.53946 * 113.77022 * 185.00333 * 10 9 8 13 13 C 1.53948 * 86.29225 * 137.90585 * 12 10 9 14 14 N 1.47584 * 113.76568 * 281.49515 * 10 9 8 15 15 C 1.36941 * 134.49563 * 41.05560 * 14 10 9 16 16 H 1.08001 * 119.99287 * 359.97438 * 15 14 10 17 17 C 1.38809 * 120.00115 * 180.02562 * 15 14 10 18 18 N 1.31621 * 120.00036 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46978 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47374 * 120.00237 * 19 17 15 22 22 H 1.48498 * 109.47308 * 240.00111 * 19 17 15 23 23 C 1.39722 * 118.27429 * 0.27272 * 5 4 3 24 24 C 1.38746 * 119.07864 * 359.46403 * 23 5 4 25 25 O 1.35677 * 119.58415 * 180.29628 * 24 23 5 26 26 C 1.42908 * 116.99793 * 180.25693 * 25 24 23 27 27 N 1.32256 * 119.58353 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47050 * 300.00116 * 1 2 3 29 29 H 1.08994 * 109.46637 * 59.99720 * 1 2 3 30 30 H 1.08991 * 109.47055 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.45648 * 359.97438 * 4 3 2 32 32 H 0.96995 * 120.00015 * 359.72530 * 8 6 5 33 33 H 1.09005 * 109.47306 * 299.99972 * 9 8 6 34 34 H 1.09002 * 109.47518 * 60.00210 * 9 8 6 35 35 H 1.09006 * 113.73557 * 252.24630 * 12 10 9 36 36 H 1.08991 * 113.74299 * 23.44771 * 12 10 9 37 37 H 1.08997 * 113.76965 * 90.69239 * 13 12 10 38 38 H 1.08994 * 113.76772 * 222.09274 * 13 12 10 39 39 H 0.97004 * 120.00072 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.46506 * 179.72801 * 23 5 4 41 41 H 1.08990 * 109.47301 * 59.99786 * 26 25 24 42 42 H 1.09003 * 109.46611 * 179.97438 * 26 25 24 43 43 H 1.09007 * 109.46600 * 299.99324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4311 1.2714 0.0005 5 6 4.0545 2.5219 0.0000 6 6 5.5319 2.6346 0.0000 7 8 6.2178 1.6317 0.0009 8 7 6.1150 3.8498 -0.0011 9 6 7.5757 3.9613 -0.0006 10 6 7.9744 5.4384 -0.0013 11 1 7.5062 6.0058 0.8029 12 6 9.4912 5.6716 -0.1237 13 6 9.1368 6.8058 -1.1025 14 7 7.8701 6.0819 -1.3254 15 6 6.9626 6.0287 -2.3495 16 1 6.0886 5.4000 -2.2643 17 6 7.1665 6.7821 -3.4974 18 7 8.2325 7.5471 -3.6018 19 14 5.9290 6.7089 -4.8947 20 1 4.8276 5.7810 -4.5324 21 1 5.3739 8.0650 -5.1358 22 1 6.6012 6.2231 -6.1265 23 6 3.2485 3.6632 0.0048 24 6 1.8690 3.5146 -0.0015 25 8 1.0767 4.6160 -0.0030 26 6 -0.3358 4.3990 -0.0039 27 7 1.3167 2.3128 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 4.0200 0.3660 0.0014 32 1 5.5675 4.6504 -0.0059 33 1 7.9767 3.4775 0.8902 34 1 7.9775 3.4756 -0.8898 35 1 9.9577 6.0178 0.7986 36 1 10.0268 4.8424 -0.5856 37 1 9.0096 7.7763 -0.6229 38 1 9.7807 6.8452 -1.9810 39 1 8.3752 8.0733 -4.4041 40 1 3.6931 4.6474 0.0089 41 1 -0.6176 3.8368 0.8863 42 1 -0.8509 5.3596 -0.0046 43 1 -0.6162 3.8352 -0.8937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038462052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:37 Heat of formation + Delta-G solvation = -33.790168 kcal Electronic energy + Delta-G solvation = -26997.105155 eV Core-core repulsion = 23044.723788 eV Total energy + Delta-G solvation = -3952.381367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.24037 -40.81410 -40.00666 -39.58042 -38.00952 -35.71377 -34.22698 -33.70461 -31.66805 -29.93035 -29.50393 -28.71892 -27.53484 -25.43358 -25.26637 -24.50794 -23.46099 -21.85666 -20.93902 -20.12254 -19.06121 -18.57547 -17.80912 -17.59842 -17.52709 -17.08513 -16.87124 -16.57558 -16.54715 -16.24066 -15.95607 -15.70984 -15.38493 -14.90940 -14.74967 -14.61772 -14.20148 -13.59101 -13.50423 -13.27423 -12.99712 -12.96381 -12.68543 -12.60938 -12.59816 -12.56690 -12.26883 -11.86368 -11.76987 -11.60780 -11.46398 -11.29349 -11.04154 -10.97349 -10.81808 -10.10964 -9.38919 -8.85633 -7.85176 -5.16109 -0.53584 -0.02528 1.43604 1.45298 1.53244 1.63079 1.69776 1.97980 2.14829 2.48207 2.59127 3.04266 3.34642 3.40483 3.56997 3.74461 3.88074 4.01396 4.06177 4.18619 4.36144 4.38594 4.38886 4.39206 4.42066 4.57666 4.65471 4.69800 4.73659 4.74631 4.87556 4.90478 4.96949 5.10204 5.12201 5.33754 5.37816 5.64644 5.70555 5.78298 6.01031 6.19500 6.38052 6.46010 6.97671 7.01385 7.67955 8.62341 9.31814 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.003702 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.858996 B = 7562.571251 C = 8717.752826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C 0.356 3.644 4 C -0.179 4.179 5 C -0.021 4.021 6 C 0.559 3.441 7 O -0.563 6.563 8 N -0.698 5.698 9 C 0.130 3.870 10 C 0.131 3.869 11 H 0.074 0.926 12 C -0.129 4.129 13 C 0.149 3.851 14 N -0.630 5.630 15 C -0.210 4.210 16 H 0.085 0.915 17 C -0.068 4.068 18 N -0.953 5.953 19 Si 0.961 3.039 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.299 1.299 23 C -0.197 4.197 24 C 0.356 3.644 25 O -0.310 6.310 26 C 0.034 3.966 27 N -0.577 5.577 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.410 0.590 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.038 0.962 39 H 0.244 0.756 40 H 0.158 0.842 41 H 0.065 0.935 42 H 0.123 0.877 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.850 -9.868 11.978 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.215 6.215 3 C 0.178 3.822 4 C -0.201 4.201 5 C -0.031 4.031 6 C 0.345 3.655 7 O -0.443 6.443 8 N -0.348 5.348 9 C 0.005 3.995 10 C 0.025 3.975 11 H 0.092 0.908 12 C -0.168 4.168 13 C 0.024 3.976 14 N -0.356 5.356 15 C -0.338 4.338 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.227 1.227 23 C -0.219 4.219 24 C 0.178 3.822 25 O -0.216 6.216 26 C -0.061 4.061 27 N -0.317 5.317 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.173 0.827 32 H 0.247 0.753 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.176 0.824 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.225 -10.539 11.690 22.605 hybrid contribution -0.360 0.814 -1.277 1.556 sum -16.584 -9.726 10.414 21.865 Atomic orbital electron populations 1.23172 0.75122 1.05154 1.02612 1.86294 1.24951 1.23051 1.87218 1.19181 0.88517 0.84016 0.90472 1.20952 0.92028 0.98920 1.08215 1.19763 0.92863 0.93069 0.97425 1.18146 0.86991 0.83629 0.76734 1.90743 1.65028 1.37090 1.51429 1.45870 1.08811 1.07768 1.72321 1.21707 0.78615 0.97483 1.01662 1.22708 0.95549 0.91016 0.88190 0.90822 1.23561 0.94512 0.98929 0.99790 1.22179 0.86941 0.93205 0.95313 1.46443 1.25071 1.50769 1.13337 1.19318 1.01190 1.20112 0.93212 0.89762 1.25435 0.99869 1.00207 1.00577 1.69996 1.29262 1.32839 1.28173 0.85259 0.78862 0.77005 0.79806 1.19301 1.22039 1.22659 1.21161 0.90939 1.00300 1.09461 1.19230 0.88490 0.84194 0.90319 1.86315 1.21140 1.27007 1.87157 1.23166 0.75548 1.04710 1.02639 1.66676 1.41628 0.98370 1.25060 0.91837 0.92231 0.85575 0.82729 0.75335 0.89255 0.93302 0.88680 0.90249 0.95943 0.94352 0.94642 0.82405 0.91641 0.85850 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.38 113.37 1.18 1.64 16 2 O -0.31 -6.75 10.47 -89.97 -0.94 -7.69 16 3 C 0.36 9.03 7.48 84.75 0.63 9.66 16 4 C -0.18 -4.97 9.60 22.75 0.22 -4.75 16 5 C -0.02 -0.61 5.90 -19.92 -0.12 -0.73 16 6 C 0.56 18.62 7.80 86.88 0.68 19.30 16 7 O -0.56 -21.89 16.44 -3.74 -0.06 -21.95 16 8 N -0.70 -22.27 5.49 -465.66 -2.55 -24.83 16 9 C 0.13 4.31 5.54 86.38 0.48 4.79 16 10 C 0.13 4.60 4.33 45.09 0.20 4.79 16 11 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 12 C -0.13 -4.28 7.86 31.25 0.25 -4.04 16 13 C 0.15 6.68 7.52 86.48 0.65 7.33 16 14 N -0.63 -29.71 3.57 -694.11 -2.48 -32.19 16 15 C -0.21 -11.08 10.51 84.03 0.88 -10.20 16 16 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 17 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 18 N -0.95 -56.91 11.38 21.65 0.25 -56.67 16 19 Si 0.96 45.93 29.55 68.60 2.03 47.96 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 C -0.20 -5.25 9.54 22.75 0.22 -5.03 16 24 C 0.36 9.11 7.48 84.75 0.63 9.75 16 25 O -0.31 -7.18 10.47 -89.95 -0.94 -8.12 16 26 C 0.03 0.51 10.38 113.37 1.18 1.69 16 27 N -0.58 -14.08 8.02 -422.18 -3.39 -17.46 16 28 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 29 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 30 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.16 4.27 7.74 -2.91 -0.02 4.25 16 32 H 0.41 12.24 6.61 -92.71 -0.61 11.63 16 33 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.04 1.98 7.15 -2.39 -0.02 1.96 16 39 H 0.24 14.35 8.31 -92.70 -0.77 13.58 16 40 H 0.16 3.88 6.53 -2.91 -0.02 3.86 16 41 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 42 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 0.90 8.10 -2.38 -0.02 0.88 16 Total: -1.00 -70.66 368.18 -0.13 -70.79 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.42 Total: 19.32 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 7.54 Total: 30.84 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -8.18 Total: -131.15 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.95 Total: -37.76 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -70.66 -0.13 -70.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038462052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.003 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds