Wall clock time and date at job start Tue Mar 31 2020 13:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35681 * 117.00065 * 2 1 4 4 C 1.38745 * 119.58234 * 179.97438 * 3 2 1 5 5 C 1.39719 * 119.07944 * 179.97438 * 4 3 2 6 6 C 1.48175 * 120.86518 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99623 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00190 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99783 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46781 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.73754 * 303.75803 * 10 9 8 12 12 C 1.53505 * 113.46622 * 172.94547 * 10 9 8 13 13 C 1.53501 * 83.33946 * 219.14903 * 12 10 9 14 14 N 1.47062 * 113.47048 * 74.50698 * 10 9 8 15 15 C 1.36938 * 136.05592 * 321.85973 * 14 10 9 16 16 H 1.07998 * 119.99894 * 0.02562 * 15 14 10 17 17 C 1.38809 * 120.00002 * 180.02562 * 15 14 10 18 18 N 1.31622 * 120.00086 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46693 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46966 * 120.00184 * 19 17 15 22 22 H 1.48495 * 109.47273 * 240.00362 * 19 17 15 23 23 C 1.39730 * 118.27392 * 359.97438 * 5 4 3 24 24 C 1.38737 * 119.07742 * 0.04427 * 23 5 4 25 25 O 1.35687 * 119.58317 * 179.97438 * 24 23 5 26 26 C 1.42900 * 116.99913 * 179.97438 * 25 24 23 27 27 N 1.32248 * 119.58486 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47161 * 300.00493 * 1 2 3 29 29 H 1.09001 * 109.47325 * 59.99935 * 1 2 3 30 30 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.45931 * 359.70421 * 4 3 2 32 32 H 0.96999 * 119.99570 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47514 * 300.00004 * 9 8 6 34 34 H 1.09000 * 109.47155 * 60.00645 * 9 8 6 35 35 H 1.08999 * 114.20403 * 332.73277 * 12 10 9 36 36 H 1.08995 * 114.21031 * 105.56345 * 12 10 9 37 37 H 1.08998 * 113.46877 * 271.28007 * 13 12 10 38 38 H 1.09000 * 113.51896 * 140.85331 * 13 12 10 39 39 H 0.97000 * 120.00311 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.45694 * 180.02562 * 23 5 4 41 41 H 1.09001 * 109.46650 * 179.97438 * 26 25 24 42 42 H 1.09004 * 109.46973 * 299.99585 * 26 25 24 43 43 H 1.09000 * 109.47103 * 59.99618 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4310 1.2714 0.0005 5 6 4.0544 2.5218 0.0000 6 6 5.5318 2.6347 0.0000 7 8 6.2177 1.6316 0.0000 8 7 6.1149 3.8498 -0.0011 9 6 7.5756 3.9612 -0.0005 10 6 7.9743 5.4384 -0.0013 11 1 7.5451 5.9901 -0.8377 12 6 9.4827 5.6645 0.1721 13 6 9.0247 6.8385 1.0485 14 7 7.7785 6.0986 1.2981 15 6 6.8457 6.0475 2.2994 16 1 5.9966 5.3858 2.2130 17 6 6.9916 6.8462 3.4252 18 7 8.0263 7.6530 3.5302 19 14 5.7196 6.7761 4.7915 20 1 4.6625 5.7964 4.4336 21 1 6.3747 6.3569 6.0566 22 1 5.1108 8.1186 4.9704 23 6 3.2484 3.6632 -0.0016 24 6 1.8690 3.5146 -0.0017 25 8 1.0765 4.6160 -0.0028 26 6 -0.3359 4.3990 -0.0033 27 7 1.3167 2.3128 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0199 0.3661 0.0058 32 1 5.5673 4.6504 -0.0015 33 1 7.9766 3.4775 0.8901 34 1 7.9774 3.4756 -0.8899 35 1 9.9935 4.8716 0.7184 36 1 9.9978 5.9627 -0.7410 37 1 8.8762 7.7638 0.4918 38 1 9.6333 6.9776 1.9421 39 1 8.1281 8.2114 4.3168 40 1 3.6930 4.6474 -0.0025 41 1 -0.8510 5.3596 -0.0037 42 1 -0.6165 3.8355 -0.8932 43 1 -0.6174 3.8364 0.8868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038462055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:41 Heat of formation + Delta-G solvation = -5.188107 kcal Electronic energy + Delta-G solvation = -27050.813533 eV Core-core repulsion = 23099.672445 eV Total energy + Delta-G solvation = -3951.141088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19305 -39.50010 -39.09255 -38.16124 -36.99382 -34.26779 -32.66562 -32.20484 -30.68044 -28.42672 -28.02908 -27.60682 -26.73781 -24.18768 -23.49803 -23.45014 -21.88984 -20.61808 -19.46988 -18.84207 -18.11290 -16.96304 -16.59629 -16.47507 -16.46302 -15.75539 -15.74058 -15.36258 -15.29776 -15.03698 -14.62698 -14.11424 -13.88503 -13.72662 -13.42323 -13.27627 -12.94014 -12.48376 -12.32193 -11.96097 -11.82957 -11.82193 -11.56710 -11.14537 -11.02224 -10.85576 -10.79286 -10.58685 -10.36458 -10.04722 -9.97035 -9.84573 -9.79779 -9.28148 -8.84005 -8.67429 -8.37138 -6.92753 -5.79520 -3.12394 0.60266 1.02721 2.64578 2.87814 2.93884 3.36003 3.38410 3.43443 3.44877 3.72630 4.02748 4.41051 4.69543 4.81497 4.94855 4.98286 5.01961 5.04032 5.07578 5.14657 5.17459 5.31067 5.36844 5.38001 5.52695 5.63132 5.68769 5.87804 5.93379 6.02234 6.06377 6.28872 6.37159 6.56640 6.60521 6.65334 6.78289 7.13740 7.20252 7.36420 7.47909 7.55752 7.73342 7.94927 8.35143 9.00121 9.67747 10.59653 11.37563 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.003788 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.985312 B = 7390.911086 C = 8611.072649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.355 3.645 4 C -0.171 4.171 5 C -0.013 4.013 6 C 0.556 3.444 7 O -0.534 6.534 8 N -0.700 5.700 9 C 0.120 3.880 10 C 0.126 3.874 11 H 0.050 0.950 12 C -0.160 4.160 13 C 0.151 3.849 14 N -0.601 5.601 15 C -0.215 4.215 16 H 0.081 0.919 17 C -0.005 4.005 18 N -0.917 5.917 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C -0.193 4.193 24 C 0.359 3.641 25 O -0.299 6.299 26 C 0.040 3.960 27 N -0.584 5.584 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.405 0.595 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.253 0.747 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.537 -9.299 -10.205 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.177 3.823 4 C -0.193 4.193 5 C -0.024 4.024 6 C 0.341 3.659 7 O -0.412 6.412 8 N -0.350 5.350 9 C -0.004 4.004 10 C 0.018 3.982 11 H 0.067 0.933 12 C -0.199 4.199 13 C 0.026 3.974 14 N -0.327 5.327 15 C -0.343 4.343 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.564 5.564 19 Si 0.737 3.263 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.215 4.215 24 C 0.181 3.819 25 O -0.205 6.205 26 C -0.055 4.055 27 N -0.324 5.324 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.175 0.825 32 H 0.241 0.759 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.170 0.830 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.908 -9.948 -9.863 19.740 hybrid contribution -0.818 0.637 0.844 1.337 sum -14.726 -9.312 -9.019 19.619 Atomic orbital electron populations 1.22870 0.77182 1.03072 1.02371 1.86286 1.22913 1.23945 1.87660 1.19138 0.88661 0.83395 0.91125 1.20916 0.91368 0.99205 1.07788 1.19980 0.94101 0.92272 0.96014 1.17907 0.86180 0.84140 0.77657 1.90764 1.64135 1.36219 1.50048 1.45907 1.09066 1.07531 1.72471 1.21925 0.78100 0.98647 1.01733 1.22440 0.94324 0.90566 0.90856 0.93313 1.23661 0.94833 1.01455 0.99971 1.22032 0.87562 0.91556 0.96296 1.45696 1.26500 1.46070 1.14472 1.18885 1.01482 1.19501 0.94383 0.90150 1.24758 0.98287 0.98824 0.98325 1.69835 1.29329 1.28136 1.29063 0.86133 0.80643 0.77279 0.82276 1.20433 1.21688 1.21708 1.21122 0.90584 1.00429 1.09315 1.19128 0.88346 0.83731 0.90710 1.86322 1.19414 1.27340 1.87471 1.22877 0.77418 1.02944 1.02246 1.66605 1.41928 0.98572 1.25302 0.92295 0.92334 0.88461 0.82530 0.75860 0.90650 0.91796 0.90133 0.92271 0.95704 0.90945 0.93709 0.83030 0.88372 0.92374 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.30 -3.57 10.47 -18.74 -0.20 -3.77 16 3 C 0.35 4.76 7.48 -17.19 -0.13 4.63 16 4 C -0.17 -2.44 9.60 -38.84 -0.37 -2.82 16 5 C -0.01 -0.20 5.90 -104.71 -0.62 -0.82 16 6 C 0.56 9.54 7.80 -12.18 -0.09 9.44 16 7 O -0.53 -10.50 16.44 5.35 0.09 -10.41 16 8 N -0.70 -11.75 5.29 -61.15 -0.32 -12.07 16 9 C 0.12 2.10 5.52 -4.04 -0.02 2.08 16 10 C 0.13 2.34 4.10 -72.40 -0.30 2.05 16 11 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.16 -2.82 8.03 -26.21 -0.21 -3.04 16 13 C 0.15 3.38 7.39 -8.51 -0.06 3.32 16 14 N -0.60 -14.31 3.65 -176.99 -0.65 -14.96 16 15 C -0.22 -5.68 10.55 -15.06 -0.16 -5.84 16 16 H 0.08 2.04 7.50 -52.49 -0.39 1.65 16 17 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 18 N -0.92 -26.64 11.51 55.49 0.64 -26.00 16 19 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C -0.19 -2.73 9.54 -38.84 -0.37 -3.10 16 24 C 0.36 4.93 7.48 -17.18 -0.13 4.80 16 25 O -0.30 -3.81 10.47 -18.77 -0.20 -4.01 16 26 C 0.04 0.36 10.38 101.05 1.05 1.41 16 27 N -0.58 -7.69 8.02 -13.45 -0.11 -7.80 16 28 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.16 2.18 7.74 -52.48 -0.41 1.78 16 32 H 0.41 6.49 6.50 -40.82 -0.27 6.23 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.42 8.12 -51.93 -0.42 0.99 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.15 2.01 6.53 -52.49 -0.34 1.67 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 43 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -32.32 367.62 -6.67 -38.99 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.98 Total: 4.29 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -0.46 Total: 13.27 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.44 Total: -60.83 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.30 Total: -18.19 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.32 -6.67 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038462055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.802 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds