Wall clock time and date at job start Tue Mar 31 2020 13:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35681 * 117.00065 * 2 1 4 4 C 1.38745 * 119.58234 * 179.97438 * 3 2 1 5 5 C 1.39719 * 119.07944 * 179.97438 * 4 3 2 6 6 C 1.48175 * 120.86518 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99623 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00190 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99783 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46781 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.73754 * 303.75803 * 10 9 8 12 12 C 1.53505 * 113.46622 * 172.94547 * 10 9 8 13 13 C 1.53501 * 83.33946 * 219.14903 * 12 10 9 14 14 N 1.47062 * 113.47048 * 74.50698 * 10 9 8 15 15 C 1.36938 * 136.05592 * 321.85973 * 14 10 9 16 16 H 1.07998 * 119.99894 * 0.02562 * 15 14 10 17 17 C 1.38809 * 120.00002 * 180.02562 * 15 14 10 18 18 N 1.31622 * 120.00086 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46693 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46966 * 120.00184 * 19 17 15 22 22 H 1.48495 * 109.47273 * 240.00362 * 19 17 15 23 23 C 1.39730 * 118.27392 * 359.97438 * 5 4 3 24 24 C 1.38737 * 119.07742 * 0.04427 * 23 5 4 25 25 O 1.35687 * 119.58317 * 179.97438 * 24 23 5 26 26 C 1.42900 * 116.99913 * 179.97438 * 25 24 23 27 27 N 1.32248 * 119.58486 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47161 * 300.00493 * 1 2 3 29 29 H 1.09001 * 109.47325 * 59.99935 * 1 2 3 30 30 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.45931 * 359.70421 * 4 3 2 32 32 H 0.96999 * 119.99570 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47514 * 300.00004 * 9 8 6 34 34 H 1.09000 * 109.47155 * 60.00645 * 9 8 6 35 35 H 1.08999 * 114.20403 * 332.73277 * 12 10 9 36 36 H 1.08995 * 114.21031 * 105.56345 * 12 10 9 37 37 H 1.08998 * 113.46877 * 271.28007 * 13 12 10 38 38 H 1.09000 * 113.51896 * 140.85331 * 13 12 10 39 39 H 0.97000 * 120.00311 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.45694 * 180.02562 * 23 5 4 41 41 H 1.09001 * 109.46650 * 179.97438 * 26 25 24 42 42 H 1.09004 * 109.46973 * 299.99585 * 26 25 24 43 43 H 1.09000 * 109.47103 * 59.99618 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4310 1.2714 0.0005 5 6 4.0544 2.5218 0.0000 6 6 5.5318 2.6347 0.0000 7 8 6.2177 1.6316 0.0000 8 7 6.1149 3.8498 -0.0011 9 6 7.5756 3.9612 -0.0005 10 6 7.9743 5.4384 -0.0013 11 1 7.5451 5.9901 -0.8377 12 6 9.4827 5.6645 0.1721 13 6 9.0247 6.8385 1.0485 14 7 7.7785 6.0986 1.2981 15 6 6.8457 6.0475 2.2994 16 1 5.9966 5.3858 2.2130 17 6 6.9916 6.8462 3.4252 18 7 8.0263 7.6530 3.5302 19 14 5.7196 6.7761 4.7915 20 1 4.6625 5.7964 4.4336 21 1 6.3747 6.3569 6.0566 22 1 5.1108 8.1186 4.9704 23 6 3.2484 3.6632 -0.0016 24 6 1.8690 3.5146 -0.0017 25 8 1.0765 4.6160 -0.0028 26 6 -0.3359 4.3990 -0.0033 27 7 1.3167 2.3128 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0199 0.3661 0.0058 32 1 5.5673 4.6504 -0.0015 33 1 7.9766 3.4775 0.8901 34 1 7.9774 3.4756 -0.8899 35 1 9.9935 4.8716 0.7184 36 1 9.9978 5.9627 -0.7410 37 1 8.8762 7.7638 0.4918 38 1 9.6333 6.9776 1.9421 39 1 8.1281 8.2114 4.3168 40 1 3.6930 4.6474 -0.0025 41 1 -0.8510 5.3596 -0.0037 42 1 -0.6165 3.8355 -0.8932 43 1 -0.6174 3.8364 0.8868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038462055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:41 Heat of formation + Delta-G solvation = -30.222453 kcal Electronic energy + Delta-G solvation = -27051.899104 eV Core-core repulsion = 23099.672445 eV Total energy + Delta-G solvation = -3952.226659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24242 -40.84932 -40.00740 -39.74386 -38.01144 -35.70325 -34.26228 -33.71026 -31.66887 -29.98263 -29.48954 -28.70416 -27.53396 -25.40342 -25.35818 -24.50166 -23.35109 -21.85040 -21.03625 -20.14384 -19.06138 -18.58392 -17.81308 -17.59486 -17.52773 -17.09355 -16.87064 -16.57603 -16.54389 -16.23469 -15.95393 -15.72655 -15.35914 -14.89419 -14.74674 -14.60659 -14.20083 -13.61661 -13.50587 -13.32791 -12.99771 -12.98049 -12.69973 -12.61516 -12.60241 -12.56973 -12.28955 -11.86188 -11.76991 -11.63087 -11.53206 -11.20842 -11.04279 -10.91258 -10.81572 -10.09679 -9.39063 -8.86866 -7.86233 -5.17292 -0.53670 -0.02644 1.43731 1.45403 1.53455 1.63323 1.69696 1.98000 2.15199 2.47596 2.59022 3.04442 3.36273 3.43859 3.57996 3.74383 3.88046 3.96087 4.06118 4.19364 4.36057 4.37637 4.38810 4.39157 4.41994 4.57746 4.66100 4.69576 4.72373 4.73793 4.87588 4.90649 4.96855 5.09412 5.11902 5.33554 5.37097 5.61817 5.70478 5.77269 5.99450 6.19456 6.38189 6.45920 6.95568 7.01180 7.66169 8.65574 9.31518 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.003788 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.985312 B = 7390.911086 C = 8611.072649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.308 6.308 3 C 0.357 3.643 4 C -0.179 4.179 5 C -0.021 4.021 6 C 0.559 3.441 7 O -0.563 6.563 8 N -0.697 5.697 9 C 0.128 3.872 10 C 0.132 3.868 11 H 0.072 0.928 12 C -0.133 4.133 13 C 0.142 3.858 14 N -0.629 5.629 15 C -0.204 4.204 16 H 0.087 0.913 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.962 3.038 20 H -0.268 1.268 21 H -0.299 1.299 22 H -0.293 1.293 23 C -0.198 4.198 24 C 0.356 3.644 25 O -0.310 6.310 26 C 0.034 3.966 27 N -0.576 5.576 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.410 0.590 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.023 0.977 38 H 0.035 0.965 39 H 0.245 0.755 40 H 0.157 0.843 41 H 0.123 0.877 42 H 0.065 0.935 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 -10.168 -11.670 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.215 6.215 3 C 0.178 3.822 4 C -0.201 4.201 5 C -0.031 4.031 6 C 0.345 3.655 7 O -0.443 6.443 8 N -0.347 5.347 9 C 0.003 3.997 10 C 0.026 3.974 11 H 0.090 0.910 12 C -0.172 4.172 13 C 0.016 3.984 14 N -0.356 5.356 15 C -0.333 4.333 16 H 0.105 0.895 17 C -0.261 4.261 18 N -0.602 5.602 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.226 1.226 22 H -0.220 1.220 23 C -0.219 4.219 24 C 0.178 3.822 25 O -0.216 6.216 26 C -0.061 4.061 27 N -0.317 5.317 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.173 0.827 32 H 0.246 0.754 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.175 0.825 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.666 -10.833 -11.366 22.180 hybrid contribution -0.375 0.854 1.216 1.533 sum -16.041 -9.980 -10.149 21.446 Atomic orbital electron populations 1.23175 0.75124 1.05159 1.02611 1.86294 1.24949 1.23028 1.87218 1.19181 0.88518 0.84018 0.90464 1.20950 0.92025 0.98900 1.08198 1.19771 0.92888 0.93059 0.97413 1.18148 0.86987 0.83642 0.76754 1.90743 1.65025 1.37059 1.51485 1.45877 1.08871 1.07747 1.72245 1.21766 0.78589 0.97692 1.01628 1.22598 0.95048 0.90799 0.88955 0.91046 1.23481 0.94588 0.98719 1.00375 1.22055 0.87174 0.93312 0.95842 1.46012 1.26429 1.46957 1.16153 1.19223 1.01380 1.17912 0.94734 0.89529 1.25456 1.00177 0.99717 1.00717 1.70004 1.31203 1.29620 1.29368 0.85242 0.78911 0.77109 0.79579 1.19210 1.22641 1.21992 1.21158 0.90973 1.00287 1.09488 1.19223 0.88471 0.84200 0.90328 1.86317 1.21149 1.27021 1.87160 1.23167 0.75545 1.04708 1.02647 1.66672 1.41620 0.98357 1.25059 0.92244 0.91834 0.85557 0.82695 0.75361 0.93280 0.89364 0.90134 0.88106 0.95926 0.94637 0.94624 0.82522 0.85861 0.91617 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.38 113.37 1.18 1.65 16 2 O -0.31 -6.78 10.47 -89.99 -0.94 -7.73 16 3 C 0.36 9.10 7.48 84.75 0.63 9.73 16 4 C -0.18 -4.99 9.60 22.75 0.22 -4.78 16 5 C -0.02 -0.63 5.90 -19.92 -0.12 -0.74 16 6 C 0.56 18.77 7.80 86.88 0.68 19.45 16 7 O -0.56 -21.96 16.44 -3.77 -0.06 -22.02 16 8 N -0.70 -22.56 5.29 -465.66 -2.46 -25.03 16 9 C 0.13 4.25 5.52 86.38 0.48 4.73 16 10 C 0.13 4.64 4.10 41.79 0.17 4.81 16 11 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 12 C -0.13 -4.38 8.03 30.93 0.25 -4.13 16 13 C 0.14 6.33 7.39 83.18 0.62 6.95 16 14 N -0.63 -29.66 3.65 -713.88 -2.61 -32.26 16 15 C -0.20 -10.75 10.55 84.03 0.89 -9.86 16 16 H 0.09 4.34 7.50 -2.91 -0.02 4.32 16 17 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 18 N -0.95 -56.85 11.51 21.65 0.25 -56.60 16 19 Si 0.96 45.76 29.55 68.60 2.03 47.79 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 C -0.20 -5.37 9.54 22.75 0.22 -5.15 16 24 C 0.36 9.26 7.48 84.75 0.63 9.89 16 25 O -0.31 -7.32 10.47 -90.06 -0.94 -8.27 16 26 C 0.03 0.52 10.38 113.37 1.18 1.70 16 27 N -0.58 -14.22 8.02 -422.19 -3.39 -17.61 16 28 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 29 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.16 4.30 7.74 -2.91 -0.02 4.27 16 32 H 0.41 12.56 6.50 -92.71 -0.60 11.95 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 36 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.04 1.83 7.12 -2.39 -0.02 1.82 16 39 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.16 3.98 6.53 -2.91 -0.02 3.96 16 41 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.07 0.92 8.10 -2.38 -0.02 0.90 16 43 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 Total: -1.00 -70.43 367.62 -0.21 -70.64 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.43 Total: 20.18 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: 7.48 Total: 30.91 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -8.21 Total: -131.51 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.95 Total: -38.02 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.43 -0.21 -70.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038462055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.420 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds