Wall clock time and date at job start Tue Mar 31 2020 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35512 * 117.00199 * 2 1 4 4 C 1.39218 * 120.89608 * 0.02562 * 3 2 1 5 5 C 1.37896 * 119.38526 * 179.97438 * 4 3 2 6 6 N 1.32080 * 121.29442 * 359.97438 * 5 4 3 7 7 C 1.32187 * 121.97838 * 359.72720 * 6 5 4 8 8 O 1.35422 * 119.78124 * 180.29396 * 7 6 5 9 9 C 1.42904 * 116.99888 * 0.24211 * 8 7 6 10 10 C 1.40299 * 120.44122 * 0.53444 * 7 6 5 11 11 C 1.47223 * 120.64910 * 179.75486 * 10 7 6 12 12 O 1.21631 * 120.00156 * 269.72491 * 11 10 7 13 13 N 1.34779 * 120.00408 * 89.72491 * 11 10 7 14 14 C 1.46497 * 120.00558 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47101 * 179.97438 * 14 13 11 16 16 H 1.08998 * 112.78462 * 303.71957 * 15 14 13 17 17 C 1.53497 * 113.46532 * 172.94044 * 15 14 13 18 18 C 1.53760 * 83.25962 * 218.98547 * 17 15 14 19 19 N 1.47066 * 87.88512 * 26.23865 * 18 17 15 20 20 C 1.36938 * 136.05453 * 152.96567 * 19 18 17 21 21 H 1.07998 * 119.99675 * 186.04779 * 20 19 18 22 22 C 1.38810 * 119.99898 * 6.04711 * 20 19 18 23 23 N 1.31612 * 120.00053 * 354.92509 * 22 20 19 24 24 Si 1.86804 * 119.99562 * 174.92666 * 22 20 19 25 25 H 1.48504 * 109.47105 * 275.01199 * 24 22 20 26 26 H 1.48497 * 109.47064 * 35.01394 * 24 22 20 27 27 H 1.48503 * 109.46691 * 155.01718 * 24 22 20 28 28 H 1.09006 * 109.47318 * 59.99953 * 1 2 3 29 29 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46986 * 299.99949 * 1 2 3 31 31 H 1.07998 * 120.30380 * 359.95229 * 4 3 2 32 32 H 1.08003 * 119.35601 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47375 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47171 * 300.00644 * 9 8 7 35 35 H 1.09008 * 109.46994 * 60.00047 * 9 8 7 36 36 H 0.97002 * 119.99357 * 359.97438 * 13 11 10 37 37 H 1.08998 * 109.46803 * 59.99872 * 14 13 11 38 38 H 1.09005 * 109.46821 * 300.00152 * 14 13 11 39 39 H 1.09004 * 114.20602 * 332.74037 * 17 15 14 40 40 H 1.09004 * 114.21002 * 105.36571 * 17 15 14 41 41 H 1.09003 * 113.46050 * 271.50579 * 18 17 15 42 42 H 1.09001 * 113.55120 * 140.99012 * 18 17 15 43 43 H 0.97005 * 119.99750 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3867 0.0005 5 6 1.9626 3.5984 0.0011 6 7 3.2819 3.6625 0.0016 7 6 4.0355 2.5766 0.0069 8 8 5.3846 2.6941 0.0132 9 6 5.9204 4.0189 0.0191 10 6 3.4471 1.3029 0.0011 11 6 4.2821 0.0904 0.0016 12 8 4.6275 -0.4106 -1.0515 13 7 4.6639 -0.4645 1.1690 14 6 5.4943 -1.6714 1.1696 15 6 5.7836 -2.0907 2.6122 16 1 6.2538 -1.2992 3.1957 17 6 6.5033 -3.4419 2.7233 18 6 5.5732 -3.6329 3.9327 19 7 4.6307 -2.7083 3.2849 20 6 3.2764 -2.5070 3.3043 21 1 2.8274 -1.7900 2.6330 22 6 2.4807 -3.2245 4.1868 23 7 3.0125 -4.1684 4.9340 24 14 0.6549 -2.8503 4.3138 25 1 0.4447 -1.7260 5.2610 26 1 0.1324 -2.4743 2.9756 27 1 -0.0638 -4.0530 4.8059 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2249 2.3528 0.0002 32 1 1.3882 4.5130 0.0010 33 1 7.0093 3.9705 0.0243 34 1 5.5841 4.5507 -0.8709 35 1 5.5763 4.5461 0.9090 36 1 4.3887 -0.0647 2.0089 37 1 6.4336 -1.4663 0.6559 38 1 4.9672 -2.4753 0.6558 39 1 6.3084 -4.1217 1.8938 40 1 7.5603 -3.3657 2.9786 41 1 5.9881 -3.2478 4.8643 42 1 5.1880 -4.6479 4.0300 43 1 2.4565 -4.6696 5.5510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038506551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:48 Heat of formation + Delta-G solvation = -5.723160 kcal Electronic energy + Delta-G solvation = -27931.024023 eV Core-core repulsion = 23979.859733 eV Total energy + Delta-G solvation = -3951.164290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13794 -39.24905 -38.96518 -37.88238 -37.38533 -33.86928 -32.24655 -31.96761 -30.89961 -28.07860 -28.05242 -27.60586 -26.87133 -24.44803 -23.43339 -22.60415 -21.91315 -20.40246 -19.29206 -18.99228 -17.82041 -17.53025 -16.63197 -16.43763 -16.39212 -15.73342 -15.45625 -15.28829 -15.13085 -14.73603 -14.31177 -13.97871 -13.91172 -13.61620 -13.39798 -13.16302 -12.99002 -12.63994 -12.01361 -11.81624 -11.78657 -11.58125 -11.49671 -11.28106 -11.06088 -10.94611 -10.77839 -10.56214 -10.25732 -9.96598 -9.81675 -9.53201 -9.11612 -9.02542 -8.79904 -8.72738 -8.43536 -6.86083 -5.76257 -3.07050 0.82873 1.16733 2.54862 2.97862 3.34078 3.35470 3.38649 3.42793 3.46032 3.70502 4.18473 4.44142 4.50049 4.80810 4.90477 4.97241 5.04831 5.12832 5.18791 5.22519 5.34400 5.42092 5.44269 5.44917 5.57123 5.60607 5.74661 5.82436 5.93260 5.97964 6.19064 6.38057 6.44931 6.64295 6.78968 6.99242 6.99655 7.06114 7.27325 7.41887 7.61309 7.64450 7.99259 8.01061 8.66147 9.05846 9.72102 10.66398 11.41767 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.005059 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.178814 B = 5533.759086 C = 7125.607133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.289 6.289 3 C 0.237 3.763 4 C -0.301 4.301 5 C 0.186 3.814 6 N -0.563 5.563 7 C 0.385 3.615 8 O -0.295 6.295 9 C 0.041 3.959 10 C -0.232 4.232 11 C 0.585 3.415 12 O -0.542 6.542 13 N -0.699 5.699 14 C 0.123 3.877 15 C 0.126 3.874 16 H 0.048 0.952 17 C -0.161 4.161 18 C 0.154 3.846 19 N -0.601 5.601 20 C -0.210 4.210 21 H 0.082 0.918 22 C -0.008 4.008 23 N -0.918 5.918 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.281 1.281 27 H -0.291 1.291 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.147 0.853 32 H 0.166 0.834 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.403 0.597 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.068 0.932 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 15.148 -8.442 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.198 6.198 3 C 0.182 3.818 4 C -0.322 4.322 5 C 0.031 3.969 6 N -0.291 5.291 7 C 0.206 3.794 8 O -0.200 6.200 9 C -0.054 4.054 10 C -0.239 4.239 11 C 0.369 3.631 12 O -0.419 6.419 13 N -0.348 5.348 14 C -0.002 4.002 15 C 0.019 3.981 16 H 0.066 0.934 17 C -0.200 4.200 18 C 0.029 3.971 19 N -0.327 5.327 20 C -0.337 4.337 21 H 0.100 0.900 22 C -0.204 4.204 23 N -0.565 5.565 24 Si 0.735 3.265 25 H -0.217 1.217 26 H -0.207 1.207 27 H -0.217 1.217 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.237 0.763 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.056 15.047 -9.075 17.572 hybrid contribution -1.969 0.084 0.722 2.099 sum -1.913 15.131 -8.354 17.389 Atomic orbital electron populations 1.23262 0.76913 1.05183 1.01580 1.86173 1.22468 1.25244 1.85956 1.18921 0.89975 0.85395 0.87548 1.21989 1.01830 0.92474 1.15928 1.22221 0.88456 0.97224 0.88961 1.67400 1.07953 1.30328 1.23440 1.19303 0.84435 0.87484 0.88166 1.86258 1.15360 1.31760 1.86638 1.22933 0.98673 0.81214 1.02588 1.18998 0.91466 0.93733 1.19711 1.17348 0.79118 0.82389 0.84279 1.90754 1.56430 1.63287 1.31471 1.45879 1.52316 1.28694 1.07938 1.21813 0.93600 0.86161 0.98581 1.22422 0.89873 0.94839 0.90995 0.93449 1.23717 0.97522 0.97328 1.01446 1.22025 0.86687 0.96683 0.91726 1.45691 0.99975 1.35837 1.51151 1.18893 0.79422 1.19764 1.15637 0.90020 1.24788 0.97851 0.99053 0.98726 1.69840 1.34515 1.24123 1.27994 0.86247 0.85378 0.77287 0.77612 1.21723 1.20673 1.21711 0.92096 0.87306 0.91871 0.83539 0.81740 0.88351 0.92071 0.91971 0.76307 0.92171 0.91071 0.90203 0.92365 0.95645 0.91327 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.84 101.05 0.99 1.28 16 2 O -0.29 -4.73 10.03 -18.23 -0.18 -4.92 16 3 C 0.24 3.65 6.74 -38.32 -0.26 3.40 16 4 C -0.30 -3.42 9.09 -39.34 -0.36 -3.78 16 5 C 0.19 1.99 11.15 -17.57 -0.20 1.79 16 6 N -0.56 -7.43 9.20 -13.06 -0.12 -7.55 16 7 C 0.39 5.96 7.51 -16.62 -0.12 5.84 16 8 O -0.29 -4.38 9.93 -17.96 -0.18 -4.56 16 9 C 0.04 0.42 10.38 101.05 1.05 1.47 16 10 C -0.23 -4.01 5.66 -104.58 -0.59 -4.60 16 11 C 0.58 11.70 6.42 -12.61 -0.08 11.62 16 12 O -0.54 -12.45 17.11 5.25 0.09 -12.36 16 13 N -0.70 -13.53 5.33 -61.45 -0.33 -13.86 16 14 C 0.12 2.40 5.52 -4.05 -0.02 2.37 16 15 C 0.13 2.54 4.10 -72.39 -0.30 2.24 16 16 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.16 -3.01 8.04 -26.08 -0.21 -3.21 16 18 C 0.15 3.59 7.33 -8.36 -0.06 3.53 16 19 N -0.60 -14.93 3.65 -176.81 -0.64 -15.57 16 20 C -0.21 -5.71 10.54 -15.06 -0.16 -5.86 16 21 H 0.08 2.18 7.61 -52.49 -0.40 1.78 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.06 11.61 55.49 0.64 -26.41 16 24 Si 0.90 21.79 29.56 -169.99 -5.02 16.76 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 31 H 0.15 1.20 6.45 -52.49 -0.34 0.86 16 32 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.06 0.59 8.11 -51.92 -0.42 0.17 16 36 H 0.40 7.64 8.46 -40.82 -0.35 7.30 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.77 7.30 -51.93 -0.38 1.39 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -35.19 368.48 -6.65 -41.84 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.04 Total: 5.34 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: -0.41 Total: 15.75 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.45 Total: -63.40 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.27 Total: -21.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.19 -6.65 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038506551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.115 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds