Wall clock time and date at job start Tue Mar 31 2020 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35512 * 117.00199 * 2 1 4 4 C 1.39218 * 120.89608 * 0.02562 * 3 2 1 5 5 C 1.37896 * 119.38526 * 179.97438 * 4 3 2 6 6 N 1.32080 * 121.29442 * 359.97438 * 5 4 3 7 7 C 1.32187 * 121.97838 * 359.72720 * 6 5 4 8 8 O 1.35422 * 119.78124 * 180.29396 * 7 6 5 9 9 C 1.42904 * 116.99888 * 0.24211 * 8 7 6 10 10 C 1.40299 * 120.44122 * 0.53444 * 7 6 5 11 11 C 1.47223 * 120.64910 * 179.75486 * 10 7 6 12 12 O 1.21631 * 120.00156 * 269.72491 * 11 10 7 13 13 N 1.34779 * 120.00408 * 89.72491 * 11 10 7 14 14 C 1.46497 * 120.00558 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47101 * 179.97438 * 14 13 11 16 16 H 1.08998 * 112.78462 * 303.71957 * 15 14 13 17 17 C 1.53497 * 113.46532 * 172.94044 * 15 14 13 18 18 C 1.53760 * 83.25962 * 218.98547 * 17 15 14 19 19 N 1.47066 * 87.88512 * 26.23865 * 18 17 15 20 20 C 1.36938 * 136.05453 * 152.96567 * 19 18 17 21 21 H 1.07998 * 119.99675 * 186.04779 * 20 19 18 22 22 C 1.38810 * 119.99898 * 6.04711 * 20 19 18 23 23 N 1.31612 * 120.00053 * 354.92509 * 22 20 19 24 24 Si 1.86804 * 119.99562 * 174.92666 * 22 20 19 25 25 H 1.48504 * 109.47105 * 275.01199 * 24 22 20 26 26 H 1.48497 * 109.47064 * 35.01394 * 24 22 20 27 27 H 1.48503 * 109.46691 * 155.01718 * 24 22 20 28 28 H 1.09006 * 109.47318 * 59.99953 * 1 2 3 29 29 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46986 * 299.99949 * 1 2 3 31 31 H 1.07998 * 120.30380 * 359.95229 * 4 3 2 32 32 H 1.08003 * 119.35601 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47375 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47171 * 300.00644 * 9 8 7 35 35 H 1.09008 * 109.46994 * 60.00047 * 9 8 7 36 36 H 0.97002 * 119.99357 * 359.97438 * 13 11 10 37 37 H 1.08998 * 109.46803 * 59.99872 * 14 13 11 38 38 H 1.09005 * 109.46821 * 300.00152 * 14 13 11 39 39 H 1.09004 * 114.20602 * 332.74037 * 17 15 14 40 40 H 1.09004 * 114.21002 * 105.36571 * 17 15 14 41 41 H 1.09003 * 113.46050 * 271.50579 * 18 17 15 42 42 H 1.09001 * 113.55120 * 140.99012 * 18 17 15 43 43 H 0.97005 * 119.99750 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3867 0.0005 5 6 1.9626 3.5984 0.0011 6 7 3.2819 3.6625 0.0016 7 6 4.0355 2.5766 0.0069 8 8 5.3846 2.6941 0.0132 9 6 5.9204 4.0189 0.0191 10 6 3.4471 1.3029 0.0011 11 6 4.2821 0.0904 0.0016 12 8 4.6275 -0.4106 -1.0515 13 7 4.6639 -0.4645 1.1690 14 6 5.4943 -1.6714 1.1696 15 6 5.7836 -2.0907 2.6122 16 1 6.2538 -1.2992 3.1957 17 6 6.5033 -3.4419 2.7233 18 6 5.5732 -3.6329 3.9327 19 7 4.6307 -2.7083 3.2849 20 6 3.2764 -2.5070 3.3043 21 1 2.8274 -1.7900 2.6330 22 6 2.4807 -3.2245 4.1868 23 7 3.0125 -4.1684 4.9340 24 14 0.6549 -2.8503 4.3138 25 1 0.4447 -1.7260 5.2610 26 1 0.1324 -2.4743 2.9756 27 1 -0.0638 -4.0530 4.8059 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2249 2.3528 0.0002 32 1 1.3882 4.5130 0.0010 33 1 7.0093 3.9705 0.0243 34 1 5.5841 4.5507 -0.8709 35 1 5.5763 4.5461 0.9090 36 1 4.3887 -0.0647 2.0089 37 1 6.4336 -1.4663 0.6559 38 1 4.9672 -2.4753 0.6558 39 1 6.3084 -4.1217 1.8938 40 1 7.5603 -3.3657 2.9786 41 1 5.9881 -3.2478 4.8643 42 1 5.1880 -4.6479 4.0300 43 1 2.4565 -4.6696 5.5510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038506551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:48 Heat of formation + Delta-G solvation = -33.811951 kcal Electronic energy + Delta-G solvation = -27932.242044 eV Core-core repulsion = 23979.859733 eV Total energy + Delta-G solvation = -3952.382311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.20662 -40.53762 -40.27689 -39.56752 -38.37307 -35.50397 -34.24822 -33.12945 -31.85952 -29.96898 -29.20780 -28.93470 -27.77647 -25.62611 -25.38241 -23.59702 -23.51886 -21.87055 -21.02884 -20.05671 -19.13291 -18.74531 -18.21085 -17.65583 -17.55219 -17.06686 -16.89584 -16.68713 -16.21988 -16.03588 -15.89642 -15.55287 -15.20737 -14.93596 -14.62378 -14.56721 -14.28991 -13.85878 -13.58477 -13.34385 -12.94295 -12.81357 -12.69621 -12.66847 -12.60207 -12.49926 -12.32425 -12.16918 -11.87900 -11.66836 -11.49598 -11.07499 -10.84422 -10.65938 -10.10141 -10.05819 -9.73043 -8.87663 -7.87495 -5.18585 -0.17543 0.14833 1.41440 1.44669 1.48558 1.52649 1.60203 2.16684 2.40566 2.48370 2.57075 3.27595 3.33371 3.44126 3.57249 3.76430 3.91020 3.92895 4.08843 4.18133 4.24813 4.29836 4.32592 4.38955 4.44016 4.54902 4.62783 4.66562 4.68372 4.74725 4.85948 4.89225 5.05306 5.07853 5.10431 5.33306 5.41711 5.58768 5.72549 5.96882 6.03862 6.09352 6.46312 6.68228 6.95097 7.13376 7.64555 8.65077 9.30564 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.005059 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.178814 B = 5533.759086 C = 7125.607133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.221 3.779 4 C -0.289 4.289 5 C 0.196 3.804 6 N -0.564 5.564 7 C 0.380 3.620 8 O -0.319 6.319 9 C 0.036 3.964 10 C -0.272 4.272 11 C 0.586 3.414 12 O -0.583 6.583 13 N -0.698 5.698 14 C 0.131 3.869 15 C 0.132 3.868 16 H 0.066 0.934 17 C -0.133 4.133 18 C 0.148 3.852 19 N -0.628 5.628 20 C -0.207 4.207 21 H 0.081 0.919 22 C -0.070 4.070 23 N -0.953 5.953 24 Si 0.965 3.035 25 H -0.285 1.285 26 H -0.265 1.265 27 H -0.298 1.298 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.184 0.816 32 H 0.215 0.785 33 H 0.120 0.880 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.404 0.596 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.023 0.977 42 H 0.034 0.966 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 17.965 -8.991 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.166 3.834 4 C -0.310 4.310 5 C 0.042 3.958 6 N -0.292 5.292 7 C 0.200 3.800 8 O -0.225 6.225 9 C -0.058 4.058 10 C -0.279 4.279 11 C 0.372 3.628 12 O -0.464 6.464 13 N -0.346 5.346 14 C 0.007 3.993 15 C 0.025 3.975 16 H 0.084 0.916 17 C -0.171 4.171 18 C 0.022 3.978 19 N -0.355 5.355 20 C -0.335 4.335 21 H 0.099 0.901 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.794 3.206 25 H -0.212 1.212 26 H -0.190 1.190 27 H -0.225 1.225 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.201 0.799 32 H 0.232 0.768 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.761 17.902 -9.633 20.344 hybrid contribution -1.691 -0.718 0.856 2.027 sum -2.452 17.184 -8.777 19.451 Atomic orbital electron populations 1.23563 0.74688 1.05847 1.03828 1.86110 1.25041 1.26546 1.86253 1.19210 0.89618 0.86444 0.88095 1.22383 1.03444 0.91007 1.14150 1.23115 0.87774 0.98857 0.86091 1.67546 1.09107 1.29014 1.23576 1.19364 0.84922 0.87402 0.88273 1.86220 1.15465 1.34291 1.86548 1.23202 0.99838 0.79595 1.03146 1.19013 0.92348 0.93113 1.23455 1.17816 0.78563 0.82909 0.83503 1.90705 1.58135 1.64845 1.32690 1.45897 1.52180 1.28415 1.08067 1.21652 0.94047 0.85613 0.98026 1.22560 0.88201 0.95945 0.90753 0.91622 1.23539 0.98986 0.95831 0.98784 1.22034 0.87656 0.94607 0.93503 1.46001 1.00309 1.37291 1.51851 1.19149 0.81023 1.18600 1.14760 0.90103 1.25578 1.02088 0.99430 0.99177 1.70027 1.35648 1.25466 1.29075 0.85271 0.80499 0.76685 0.78170 1.21152 1.19009 1.22491 0.89121 0.87630 0.90239 0.79869 0.76824 0.86204 0.91511 0.91301 0.76172 0.90311 0.93939 0.90152 0.88092 0.95900 0.94730 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.84 113.37 1.12 1.40 16 2 O -0.33 -10.64 10.03 -88.14 -0.88 -11.52 16 3 C 0.22 6.59 6.74 23.09 0.16 6.75 16 4 C -0.29 -5.60 9.09 22.42 0.20 -5.40 16 5 C 0.20 3.39 11.15 84.57 0.94 4.34 16 6 N -0.56 -13.48 9.20 -308.27 -2.84 -16.31 16 7 C 0.38 11.45 7.51 85.14 0.64 12.09 16 8 O -0.32 -9.35 9.93 -87.17 -0.87 -10.22 16 9 C 0.04 0.68 10.38 113.37 1.18 1.86 16 10 C -0.27 -9.42 5.66 -19.84 -0.11 -9.53 16 11 C 0.59 24.03 6.42 86.60 0.56 24.59 16 12 O -0.58 -27.74 17.11 -4.13 -0.07 -27.81 16 13 N -0.70 -27.40 5.33 -466.57 -2.49 -29.88 16 14 C 0.13 5.13 5.52 86.38 0.48 5.61 16 15 C 0.13 5.19 4.10 41.79 0.17 5.36 16 16 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 17 C -0.13 -4.77 8.04 31.02 0.25 -4.52 16 18 C 0.15 6.94 7.33 83.27 0.61 7.55 16 19 N -0.63 -31.59 3.65 -713.31 -2.60 -34.19 16 20 C -0.21 -11.44 10.54 84.03 0.89 -10.56 16 21 H 0.08 4.38 7.61 -2.91 -0.02 4.36 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.95 -57.87 11.61 21.65 0.25 -57.62 16 24 Si 0.97 45.34 29.56 68.60 2.03 47.36 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H 0.09 1.25 7.71 -2.38 -0.02 1.24 16 29 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 1.32 7.71 -2.38 -0.02 1.30 16 31 H 0.18 2.08 6.45 -2.91 -0.02 2.06 16 32 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.07 1.18 8.11 -2.38 -0.02 1.17 16 36 H 0.40 15.54 8.46 -92.71 -0.78 14.76 16 37 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.04 1.90 8.14 -2.38 -0.02 1.89 16 39 H 0.08 2.90 8.12 -2.38 -0.02 2.88 16 40 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.03 1.84 7.30 -2.39 -0.02 1.82 16 43 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -80.52 368.48 0.33 -80.19 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.25 Total: 24.01 kcal Atomic # 6 Polarization: 28.46 SS G_CDS: 7.54 Total: 36.00 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -7.67 Total: -138.01 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -1.82 Total: -49.55 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -80.52 0.33 -80.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038506551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.375 kcal (2) G-P(sol) polarization free energy of solvation -80.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds