Wall clock time and date at job start Tue Mar 31 2020 13:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35724 * 117.00241 * 2 1 4 4 C 1.41860 * 126.78962 * 179.97438 * 3 2 1 5 5 C 1.36667 * 103.81311 * 180.02562 * 4 3 2 6 6 C 1.47536 * 126.87944 * 179.97438 * 5 4 3 7 7 O 1.21575 * 120.00146 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99910 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99758 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.17587 * 35.44458 * 9 8 6 11 11 C 1.53037 * 109.32330 * 154.99918 * 9 8 6 12 12 C 1.53972 * 108.93047 * 175.74525 * 11 9 8 13 13 H 1.09001 * 112.99018 * 168.93356 * 12 11 9 14 14 C 1.55423 * 106.41517 * 293.74614 * 12 11 9 15 15 C 1.55170 * 100.35162 * 73.38278 * 14 12 11 16 16 H 1.09004 * 112.48724 * 163.35063 * 15 14 12 17 17 C 1.53269 * 109.50104 * 275.80366 * 9 8 6 18 18 N 1.47795 * 104.25640 * 40.55180 * 15 14 12 19 19 C 1.36937 * 125.85711 * 153.52745 * 18 15 14 20 20 H 1.08002 * 120.00152 * 353.84116 * 19 18 15 21 21 C 1.38814 * 119.99596 * 173.83806 * 19 18 15 22 22 N 1.31611 * 120.00066 * 6.76337 * 21 19 18 23 23 Si 1.86801 * 119.99564 * 186.76312 * 21 19 18 24 24 H 1.48505 * 109.46907 * 94.98815 * 23 21 19 25 25 H 1.48496 * 109.47022 * 214.98124 * 23 21 19 26 26 H 1.48495 * 109.47513 * 334.98729 * 23 21 19 27 27 C 1.49340 * 108.53823 * 333.48453 * 18 15 14 28 28 O 1.34661 * 106.23989 * 0.24146 * 5 4 3 29 29 N 1.20880 * 111.63384 * 359.57133 * 28 5 4 30 30 H 1.08999 * 109.47077 * 299.99652 * 1 2 3 31 31 H 1.08997 * 109.46828 * 60.00294 * 1 2 3 32 32 H 1.08995 * 109.46767 * 179.97438 * 1 2 3 33 33 H 1.07996 * 128.09123 * 0.04391 * 4 3 2 34 34 H 0.96995 * 120.00361 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.57811 * 55.87105 * 11 9 8 36 36 H 1.09005 * 109.57513 * 295.61191 * 11 9 8 37 37 H 1.08999 * 111.23878 * 191.15627 * 14 12 11 38 38 H 1.08997 * 111.23710 * 315.56383 * 14 12 11 39 39 H 1.09003 * 109.49398 * 64.79732 * 17 9 8 40 40 H 1.08994 * 109.50191 * 304.61615 * 17 9 8 41 41 H 0.97002 * 120.00148 * 180.02562 * 22 21 19 42 42 H 1.09000 * 110.79951 * 242.03630 * 27 18 15 43 43 H 1.09001 * 110.25639 * 120.02728 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4432 1.4504 0.0005 5 6 3.5391 2.8137 0.0009 6 6 4.7785 3.6141 0.0020 7 8 5.8604 3.0594 0.0022 8 7 4.7114 4.9602 0.0027 9 6 5.9422 5.7549 0.0033 10 1 6.6980 5.2449 -0.5940 11 6 5.6576 7.1295 -0.6063 12 6 6.9276 7.9940 -0.5039 13 1 6.8643 8.9141 -1.0849 14 6 7.1689 8.2423 1.0113 15 6 7.6752 6.8415 1.4462 16 1 8.1773 6.8614 2.4135 17 6 6.4511 5.9090 1.4408 18 7 8.5626 6.4166 0.3433 19 6 9.6121 5.5434 0.4492 20 1 9.9139 5.1768 1.4193 21 6 10.2881 5.1293 -0.6903 22 7 10.0098 5.6748 -1.8552 23 14 11.5927 3.7978 -0.5701 24 1 10.9845 2.4793 -0.8817 25 1 12.6810 4.0822 -1.5396 26 1 12.1497 3.7731 0.8062 27 6 8.1226 7.0991 -0.9100 28 8 2.2759 3.2802 0.0060 29 7 1.4686 2.3805 0.0003 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.2442 0.7261 0.0003 34 1 3.8483 5.4028 0.0022 35 1 4.8443 7.6092 -0.0619 36 1 5.3779 7.0138 -1.6535 37 1 7.9318 9.0045 1.1699 38 1 6.2417 8.5035 1.5211 39 1 6.7352 4.9323 1.8327 40 1 5.6641 6.3370 2.0615 41 1 10.4819 5.3852 -2.6516 42 1 7.8055 6.3708 -1.6565 43 1 8.9297 7.7139 -1.3083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047055548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:44 Heat of formation + Delta-G solvation = 34.136607 kcal Electronic energy + Delta-G solvation = -27757.067869 eV Core-core repulsion = 23807.632028 eV Total energy + Delta-G solvation = -3949.435841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.13271 -40.10021 -39.14632 -38.65123 -34.73681 -33.36750 -32.86270 -32.00293 -30.69106 -29.57627 -28.29564 -27.93450 -25.28381 -24.28398 -23.46748 -23.12858 -21.62001 -20.61234 -19.57554 -19.26518 -18.25486 -18.11702 -17.06694 -17.01802 -16.15118 -15.98528 -15.82117 -15.19863 -14.75269 -14.53904 -14.36357 -13.96197 -13.81641 -13.51556 -12.93373 -12.75748 -12.55209 -12.20626 -12.06945 -11.82225 -11.77415 -11.66485 -11.54693 -11.22920 -10.72185 -10.67155 -10.57862 -10.21722 -9.98115 -9.93494 -9.78156 -9.76179 -9.58281 -9.57528 -9.32565 -8.74073 -8.52242 -6.77261 -5.64115 -2.94985 0.67474 1.90685 2.39688 2.53149 3.10190 3.39719 3.49229 3.54926 3.56095 3.89513 4.56841 4.58677 4.75686 4.79653 4.85025 5.02633 5.12831 5.18358 5.22859 5.41466 5.52326 5.55295 5.63635 5.86294 5.87453 6.02668 6.04875 6.07260 6.11608 6.22110 6.55248 6.55592 6.62891 6.63645 6.78026 6.85622 6.96575 6.99182 7.52068 7.58033 7.64586 7.86813 7.88637 8.20514 8.28194 9.26514 9.89433 10.55597 11.48714 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003568 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.066999 B = 7846.487713 C = 9144.513226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.281 6.281 3 C 0.205 3.795 4 C -0.160 4.160 5 C -0.047 4.047 6 C 0.594 3.406 7 O -0.487 6.487 8 N -0.708 5.708 9 C 0.145 3.855 10 H 0.120 0.880 11 C -0.112 4.112 12 C -0.119 4.119 13 H 0.082 0.918 14 C -0.129 4.129 15 C 0.160 3.840 16 H 0.066 0.934 17 C -0.137 4.137 18 N -0.598 5.598 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.922 5.922 23 Si 0.906 3.094 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.282 1.282 27 C 0.180 3.820 28 O 0.113 5.887 29 N -0.394 5.394 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.190 0.810 34 H 0.398 0.602 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.251 0.749 42 H 0.053 0.947 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.730 -2.087 3.590 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.187 6.187 3 C 0.007 3.993 4 C -0.183 4.183 5 C -0.113 4.113 6 C 0.375 3.625 7 O -0.360 6.360 8 N -0.358 5.358 9 C 0.043 3.957 10 H 0.137 0.863 11 C -0.150 4.150 12 C -0.139 4.139 13 H 0.100 0.900 14 C -0.167 4.167 15 C 0.052 3.948 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.323 5.323 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.569 5.569 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.208 1.208 27 C 0.057 3.943 28 O 0.048 5.952 29 N -0.119 5.119 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.208 0.792 34 H 0.232 0.768 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.883 -2.502 3.428 19.354 hybrid contribution 0.503 -1.083 -0.025 1.195 sum -18.379 -3.585 3.403 19.032 Atomic orbital electron populations 1.23091 0.76688 1.04218 1.02412 1.86226 1.22672 1.20453 1.89366 1.21894 0.90678 0.85783 1.00909 1.22215 0.94358 0.95166 1.06531 1.24399 0.86946 0.94042 1.05940 1.16521 0.84865 0.82472 0.78606 1.91007 1.25873 1.70868 1.48259 1.46148 1.11214 1.05051 1.73416 1.21412 0.84677 0.91033 0.98589 0.86261 1.21970 0.98158 0.94675 1.00238 1.22834 0.96257 0.98195 0.96583 0.90006 1.22994 0.99763 0.98080 0.95870 1.21449 0.89568 0.90938 0.92876 0.91615 1.22688 0.98615 1.01584 0.94970 1.45156 1.32799 1.51232 1.03144 1.19022 1.05754 1.17105 0.93112 0.90631 1.24726 1.00119 0.99815 0.95441 1.69928 1.44753 1.43992 0.98257 0.86181 0.80811 0.82349 0.76946 1.21593 1.22014 1.20776 1.21717 0.91298 0.92744 0.88585 1.84925 1.11973 1.29663 1.68665 1.73964 1.15979 0.96690 1.25301 0.92158 0.92153 0.87535 0.79234 0.76773 0.92530 0.91938 0.91855 0.92136 0.92054 0.93570 0.93910 0.92941 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.73 101.05 1.08 1.32 16 2 O -0.28 -3.16 10.57 -18.88 -0.20 -3.36 16 3 C 0.20 2.59 8.00 -16.71 -0.13 2.46 16 4 C -0.16 -2.09 10.97 -38.77 -0.43 -2.52 16 5 C -0.05 -0.64 7.29 -36.36 -0.26 -0.90 16 6 C 0.59 9.63 7.77 -12.47 -0.10 9.53 16 7 O -0.49 -10.17 16.57 5.30 0.09 -10.08 16 8 N -0.71 -10.21 5.08 -54.69 -0.28 -10.48 16 9 C 0.15 2.52 2.08 -67.77 -0.14 2.38 16 10 H 0.12 2.73 5.43 -51.93 -0.28 2.45 16 11 C -0.11 -1.67 4.93 -26.21 -0.13 -1.80 16 12 C -0.12 -2.02 4.27 -87.93 -0.38 -2.40 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 14 C -0.13 -2.09 6.19 -24.30 -0.15 -2.24 16 15 C 0.16 3.12 4.30 -65.61 -0.28 2.84 16 16 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.14 -2.44 5.29 -26.13 -0.14 -2.58 16 18 N -0.60 -14.52 2.47 -159.52 -0.39 -14.91 16 19 C -0.22 -6.12 10.28 -15.06 -0.15 -6.27 16 20 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 21 C 0.00 -0.14 5.48 -17.43 -0.10 -0.24 16 22 N -0.92 -26.93 10.40 55.49 0.58 -26.35 16 23 Si 0.91 22.75 29.56 -169.99 -5.02 17.73 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.18 4.13 4.19 -1.56 -0.01 4.13 16 28 O 0.11 1.42 11.03 15.50 0.17 1.59 16 29 N -0.39 -5.06 11.50 30.47 0.35 -4.71 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.40 4.38 8.42 -40.82 -0.34 4.04 16 35 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.05 1.34 6.11 -51.93 -0.32 1.02 16 43 H 0.04 1.11 7.60 -51.93 -0.39 0.72 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -32.18 350.88 -6.65 -38.83 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.92 Total: 2.76 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.31 Total: 3.70 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.26 Total: -56.46 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.06 Total: -11.86 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.18 -6.65 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047055548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.970 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds