Wall clock time and date at job start Tue Mar 31 2020 13:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35724 * 117.00241 * 2 1 4 4 C 1.41860 * 126.78962 * 179.97438 * 3 2 1 5 5 C 1.36667 * 103.81311 * 180.02562 * 4 3 2 6 6 C 1.47536 * 126.87944 * 179.97438 * 5 4 3 7 7 O 1.21575 * 120.00146 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99910 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99758 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.17587 * 35.44458 * 9 8 6 11 11 C 1.53037 * 109.32330 * 154.99918 * 9 8 6 12 12 C 1.53972 * 108.93047 * 175.74525 * 11 9 8 13 13 H 1.09001 * 112.99018 * 168.93356 * 12 11 9 14 14 C 1.55423 * 106.41517 * 293.74614 * 12 11 9 15 15 C 1.55170 * 100.35162 * 73.38278 * 14 12 11 16 16 H 1.09004 * 112.48724 * 163.35063 * 15 14 12 17 17 C 1.53269 * 109.50104 * 275.80366 * 9 8 6 18 18 N 1.47795 * 104.25640 * 40.55180 * 15 14 12 19 19 C 1.36937 * 125.85711 * 153.52745 * 18 15 14 20 20 H 1.08002 * 120.00152 * 353.84116 * 19 18 15 21 21 C 1.38814 * 119.99596 * 173.83806 * 19 18 15 22 22 N 1.31611 * 120.00066 * 6.76337 * 21 19 18 23 23 Si 1.86801 * 119.99564 * 186.76312 * 21 19 18 24 24 H 1.48505 * 109.46907 * 94.98815 * 23 21 19 25 25 H 1.48496 * 109.47022 * 214.98124 * 23 21 19 26 26 H 1.48495 * 109.47513 * 334.98729 * 23 21 19 27 27 C 1.49340 * 108.53823 * 333.48453 * 18 15 14 28 28 O 1.34661 * 106.23989 * 0.24146 * 5 4 3 29 29 N 1.20880 * 111.63384 * 359.57133 * 28 5 4 30 30 H 1.08999 * 109.47077 * 299.99652 * 1 2 3 31 31 H 1.08997 * 109.46828 * 60.00294 * 1 2 3 32 32 H 1.08995 * 109.46767 * 179.97438 * 1 2 3 33 33 H 1.07996 * 128.09123 * 0.04391 * 4 3 2 34 34 H 0.96995 * 120.00361 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.57811 * 55.87105 * 11 9 8 36 36 H 1.09005 * 109.57513 * 295.61191 * 11 9 8 37 37 H 1.08999 * 111.23878 * 191.15627 * 14 12 11 38 38 H 1.08997 * 111.23710 * 315.56383 * 14 12 11 39 39 H 1.09003 * 109.49398 * 64.79732 * 17 9 8 40 40 H 1.08994 * 109.50191 * 304.61615 * 17 9 8 41 41 H 0.97002 * 120.00148 * 180.02562 * 22 21 19 42 42 H 1.09000 * 110.79951 * 242.03630 * 27 18 15 43 43 H 1.09001 * 110.25639 * 120.02728 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4432 1.4504 0.0005 5 6 3.5391 2.8137 0.0009 6 6 4.7785 3.6141 0.0020 7 8 5.8604 3.0594 0.0022 8 7 4.7114 4.9602 0.0027 9 6 5.9422 5.7549 0.0033 10 1 6.6980 5.2449 -0.5940 11 6 5.6576 7.1295 -0.6063 12 6 6.9276 7.9940 -0.5039 13 1 6.8643 8.9141 -1.0849 14 6 7.1689 8.2423 1.0113 15 6 7.6752 6.8415 1.4462 16 1 8.1773 6.8614 2.4135 17 6 6.4511 5.9090 1.4408 18 7 8.5626 6.4166 0.3433 19 6 9.6121 5.5434 0.4492 20 1 9.9139 5.1768 1.4193 21 6 10.2881 5.1293 -0.6903 22 7 10.0098 5.6748 -1.8552 23 14 11.5927 3.7978 -0.5701 24 1 10.9845 2.4793 -0.8817 25 1 12.6810 4.0822 -1.5396 26 1 12.1497 3.7731 0.8062 27 6 8.1226 7.0991 -0.9100 28 8 2.2759 3.2802 0.0060 29 7 1.4686 2.3805 0.0003 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.2442 0.7261 0.0003 34 1 3.8483 5.4028 0.0022 35 1 4.8443 7.6092 -0.0619 36 1 5.3779 7.0138 -1.6535 37 1 7.9318 9.0045 1.1699 38 1 6.2417 8.5035 1.5211 39 1 6.7352 4.9323 1.8327 40 1 5.6641 6.3370 2.0615 41 1 10.4819 5.3852 -2.6516 42 1 7.8055 6.3708 -1.6565 43 1 8.9297 7.7139 -1.3083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047055548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:43 Heat of formation + Delta-G solvation = 9.955493 kcal Electronic energy + Delta-G solvation = -27758.116440 eV Core-core repulsion = 23807.632028 eV Total energy + Delta-G solvation = -3950.484412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.15260 -41.51710 -40.12780 -39.96795 -36.21910 -34.73261 -34.37827 -33.15417 -32.29809 -31.16573 -29.82168 -28.61740 -27.12136 -25.45764 -24.88172 -24.48892 -22.83122 -21.82229 -21.21437 -20.60678 -19.60352 -19.12967 -18.87316 -18.00334 -17.52196 -17.20507 -16.64758 -16.53529 -16.31931 -16.01603 -15.73051 -15.43791 -15.19282 -14.87796 -14.42782 -14.12433 -13.73728 -13.41050 -13.35138 -13.20318 -13.17869 -13.00000 -12.93272 -12.64095 -12.59002 -12.48803 -12.12184 -11.84264 -11.66546 -11.56986 -11.17112 -11.13125 -11.06979 -10.86814 -10.63981 -10.50558 -10.09749 -8.77482 -7.79775 -5.08977 -0.43292 0.89470 1.34931 1.42210 1.47286 1.52328 1.54188 1.84428 2.25372 2.52910 2.92275 3.39939 3.59167 3.65582 3.74820 3.88522 3.94363 3.97219 4.16145 4.23687 4.26330 4.42646 4.45919 4.53374 4.56994 4.61431 4.64334 4.71914 4.85345 4.90121 5.16412 5.20709 5.28748 5.36464 5.38528 5.54035 5.55838 5.63462 5.77722 5.79542 5.89758 6.25479 6.31277 6.84428 7.01236 7.16562 7.85431 8.51905 9.31192 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003568 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.066999 B = 7846.487713 C = 9144.513226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.290 6.290 3 C 0.206 3.794 4 C -0.162 4.162 5 C -0.049 4.049 6 C 0.598 3.402 7 O -0.544 6.544 8 N -0.689 5.689 9 C 0.151 3.849 10 H 0.057 0.943 11 C -0.103 4.103 12 C -0.107 4.107 13 H 0.109 0.891 14 C -0.112 4.112 15 C 0.144 3.856 16 H 0.064 0.936 17 C -0.126 4.126 18 N -0.617 5.617 19 C -0.224 4.224 20 H 0.072 0.928 21 C -0.064 4.064 22 N -0.946 5.946 23 Si 0.960 3.040 24 H -0.299 1.299 25 H -0.293 1.293 26 H -0.269 1.269 27 C 0.187 3.813 28 O 0.125 5.875 29 N -0.394 5.394 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.137 0.863 33 H 0.195 0.805 34 H 0.420 0.580 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.025 0.975 40 H 0.090 0.910 41 H 0.242 0.758 42 H 0.014 0.986 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.009 -0.932 4.942 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.197 6.197 3 C 0.009 3.991 4 C -0.184 4.184 5 C -0.115 4.115 6 C 0.381 3.619 7 O -0.421 6.421 8 N -0.340 5.340 9 C 0.048 3.952 10 H 0.075 0.925 11 C -0.140 4.140 12 C -0.127 4.127 13 H 0.127 0.873 14 C -0.150 4.150 15 C 0.037 3.963 16 H 0.082 0.918 17 C -0.167 4.167 18 N -0.342 5.342 19 C -0.354 4.354 20 H 0.090 0.910 21 C -0.257 4.257 22 N -0.596 5.596 23 Si 0.790 3.210 24 H -0.227 1.227 25 H -0.220 1.220 26 H -0.193 1.193 27 C 0.063 3.937 28 O 0.059 5.941 29 N -0.118 5.118 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.212 0.788 34 H 0.259 0.741 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.044 0.956 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.033 0.967 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -22.236 -1.317 4.820 22.790 hybrid contribution 1.433 -1.505 -0.395 2.115 sum -20.803 -2.822 4.426 21.455 Atomic orbital electron populations 1.23417 0.74602 1.06395 1.02690 1.86240 1.24738 1.19637 1.89065 1.21913 0.90468 0.86243 1.00494 1.22389 0.95083 0.95219 1.05738 1.23792 0.86635 0.93783 1.07308 1.16709 0.84867 0.82900 0.77455 1.90988 1.28264 1.71981 1.50899 1.45887 1.11447 1.04402 1.72248 1.21079 0.84399 0.92203 0.97539 0.92519 1.21929 0.98339 0.92518 1.01263 1.22776 0.94183 0.98190 0.97508 0.87264 1.22958 1.01691 0.95326 0.95000 1.21803 0.89426 0.93633 0.91469 0.91799 1.22523 0.98965 0.99516 0.95702 1.45397 1.32743 1.50809 1.05282 1.19314 1.06239 1.17042 0.92813 0.91022 1.25413 1.02667 1.02060 0.95525 1.70132 1.45858 1.45192 0.98422 0.85313 0.78749 0.79549 0.77376 1.22679 1.22004 1.19344 1.21466 0.92498 0.92122 0.87654 1.84926 1.11208 1.29460 1.68537 1.73937 1.15751 0.96836 1.25308 0.91784 0.91899 0.84543 0.78821 0.74150 0.87479 0.91387 0.92033 0.87395 0.95627 0.89156 0.94852 0.96744 0.98066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.73 113.37 1.22 1.51 16 2 O -0.29 -6.04 10.57 -90.47 -0.96 -6.99 16 3 C 0.21 4.91 8.00 85.78 0.69 5.59 16 4 C -0.16 -4.14 10.97 22.80 0.25 -3.89 16 5 C -0.05 -1.29 7.29 24.36 0.18 -1.11 16 6 C 0.60 19.42 7.77 86.70 0.67 20.10 16 7 O -0.54 -23.87 16.57 -3.95 -0.07 -23.93 16 8 N -0.69 -18.75 5.08 -445.22 -2.26 -21.01 16 9 C 0.15 5.12 2.08 45.09 0.09 5.22 16 10 H 0.06 2.72 5.43 -2.39 -0.01 2.71 16 11 C -0.10 -2.70 4.93 30.93 0.15 -2.54 16 12 C -0.11 -3.37 4.27 -9.05 -0.04 -3.41 16 13 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 14 C -0.11 -3.21 6.19 32.17 0.20 -3.01 16 15 C 0.14 5.44 4.30 45.78 0.20 5.64 16 16 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 17 C -0.13 -4.29 5.29 30.98 0.16 -4.13 16 18 N -0.62 -30.92 2.47 -658.61 -1.63 -32.55 16 19 C -0.22 -12.94 10.28 84.03 0.86 -12.07 16 20 H 0.07 4.06 7.84 -2.91 -0.02 4.04 16 21 C -0.06 -3.79 5.48 84.86 0.47 -3.33 16 22 N -0.95 -58.58 10.40 21.65 0.23 -58.36 16 23 Si 0.96 48.85 29.56 68.60 2.03 50.88 16 24 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 25 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 27 C 0.19 8.86 4.19 86.41 0.36 9.22 16 28 O 0.12 2.87 11.03 65.64 0.72 3.59 16 29 N -0.39 -9.29 11.50 -172.00 -1.98 -11.27 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.19 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.42 7.74 8.42 -92.71 -0.78 6.96 16 35 H 0.11 1.86 7.97 -2.39 -0.02 1.84 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 2.18 7.75 -2.39 -0.02 2.17 16 39 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 2.29 8.00 -2.39 -0.02 2.27 16 41 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.01 0.78 6.11 -2.39 -0.01 0.77 16 43 H 0.00 0.06 7.60 -2.39 -0.02 0.04 16 Total: -1.00 -77.14 350.88 1.82 -75.32 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.27 Total: 10.54 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 5.46 Total: 13.77 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -5.64 Total: -123.18 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.30 Total: -27.33 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Total: -77.14 1.82 -75.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047055548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.276 kcal (2) G-P(sol) polarization free energy of solvation -77.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds