Wall clock time and date at job start Tue Mar 31 2020 13:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 O 1.20917 * 124.56899 * 2 1 4 4 C 1.34171 * 112.19123 * 179.97438 * 3 2 1 5 5 C 1.48205 * 126.38545 * 179.97438 * 4 3 2 6 6 O 1.21495 * 120.00029 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99846 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99775 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.17979 * 34.55983 * 8 7 5 10 10 C 1.53030 * 109.32431 * 154.11344 * 8 7 5 11 11 C 1.53973 * 108.82626 * 175.67783 * 10 8 7 12 12 H 1.09002 * 112.99183 * 169.00355 * 11 10 8 13 13 C 1.55425 * 106.41581 * 293.81933 * 11 10 8 14 14 C 1.55175 * 100.35374 * 73.37717 * 13 11 10 15 15 H 1.08999 * 113.04903 * 162.99026 * 14 13 11 16 16 C 1.52985 * 109.32741 * 275.00176 * 8 7 5 17 17 N 1.47789 * 104.25247 * 40.55426 * 14 13 11 18 18 C 1.36929 * 125.85634 * 153.50524 * 17 14 13 19 19 H 1.07997 * 119.99916 * 5.76031 * 18 17 14 20 20 C 1.38809 * 120.00276 * 185.75240 * 18 17 14 21 21 N 1.31622 * 119.99732 * 7.26741 * 20 18 17 22 22 Si 1.86805 * 120.00383 * 187.26278 * 20 18 17 23 23 H 1.48492 * 109.47167 * 265.01564 * 22 20 18 24 24 H 1.48498 * 109.46807 * 25.01935 * 22 20 18 25 25 H 1.48498 * 109.46925 * 145.01237 * 22 20 18 26 26 C 1.47087 * 108.28737 * 333.77193 * 17 14 13 27 27 C 1.36316 * 107.22876 * 0.22737 * 4 3 2 28 28 C 1.34828 * 124.56323 * 179.97438 * 2 1 3 29 29 O 1.21984 * 127.14643 * 0.05644 * 28 2 1 30 30 H 1.09001 * 109.46894 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47483 * 120.02355 * 1 2 3 32 32 H 1.08998 * 109.47416 * 240.03199 * 1 2 3 33 33 H 0.96996 * 120.00200 * 0.02562 * 7 5 4 34 34 H 1.09005 * 109.58100 * 295.48090 * 10 8 7 35 35 H 1.08994 * 109.57863 * 55.74202 * 10 8 7 36 36 H 1.09002 * 111.23275 * 315.60476 * 13 11 10 37 37 H 1.08994 * 111.23116 * 191.15548 * 13 11 10 38 38 H 1.09001 * 109.53200 * 64.75873 * 16 8 7 39 39 H 1.09000 * 109.59363 * 304.56758 * 16 8 7 40 40 H 0.97005 * 119.99904 * 180.02562 * 21 20 18 41 41 H 1.08992 * 109.97545 * 120.22255 * 26 17 14 42 42 H 1.08999 * 109.97732 * 241.51076 * 26 17 14 43 43 H 1.08007 * 127.99489 * 179.73515 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7081 0.0006 5 6 4.5761 1.6850 0.0002 6 8 5.7265 1.2942 0.0003 7 7 4.3134 3.0069 -0.0003 8 6 5.4151 3.9726 -0.0001 9 1 6.2435 3.5709 -0.5836 10 6 4.9398 5.2832 -0.6311 11 6 6.0702 6.3235 -0.5268 12 1 5.8810 7.2186 -1.1195 13 6 6.2559 6.6201 0.9875 14 6 6.9545 5.3119 1.4442 15 1 7.4460 5.4062 2.4126 16 6 5.8782 4.2121 1.4382 17 7 7.9064 5.0084 0.3552 18 6 9.0700 4.2978 0.4819 19 1 9.3144 3.8250 1.4216 20 6 9.9355 4.1851 -0.5975 21 7 9.7116 4.8758 -1.6954 22 14 11.4178 3.0533 -0.4921 23 1 12.6086 3.8350 -0.0727 24 1 11.1532 1.9825 0.5022 25 1 11.6698 2.4425 -1.8219 26 6 7.3926 5.6060 -0.8867 27 6 3.5769 -0.6502 -0.0042 28 6 2.2299 -1.1103 0.0005 29 8 1.8471 -2.2685 0.0001 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3634 -0.5142 -0.8897 32 1 -0.3634 -0.5133 0.8902 33 1 3.3950 3.3189 0.0000 34 1 4.6933 5.1156 -1.6796 35 1 4.0582 5.6447 -0.1020 36 1 5.2948 6.7489 1.4853 37 1 6.8986 7.4863 1.1441 38 1 6.2962 3.2911 1.8446 39 1 5.0311 4.5278 2.0472 40 1 10.3162 4.7968 -2.4498 41 1 8.1126 6.3234 -1.2803 42 1 7.2021 4.8262 -1.6241 43 1 4.4812 -1.2407 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047060531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:20 Heat of formation + Delta-G solvation = 49.107580 kcal Electronic energy + Delta-G solvation = -27948.479737 eV Core-core repulsion = 23999.693087 eV Total energy + Delta-G solvation = -3948.786651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -45.28133 -40.29400 -38.87430 -38.31724 -34.89847 -34.52116 -32.90510 -32.40062 -30.76207 -30.01492 -28.67793 -27.83642 -25.36000 -24.24272 -23.53366 -23.19082 -21.56221 -20.35940 -19.54208 -19.17141 -18.59082 -18.44285 -17.33953 -16.99635 -16.22925 -15.56511 -15.13223 -14.95357 -14.73082 -14.45048 -14.18429 -13.96219 -13.82631 -13.64394 -13.60987 -13.27245 -13.06578 -12.83687 -12.17469 -11.92233 -11.87486 -11.65586 -11.25607 -10.79245 -10.72849 -10.66952 -10.50281 -10.26671 -10.16333 -9.99541 -9.88013 -9.79400 -9.60855 -9.45610 -8.89880 -8.73995 -8.58422 -6.81156 -5.65631 -3.01366 0.42506 1.36690 2.45015 2.67416 2.97767 3.29436 3.45398 3.52183 3.54741 4.41427 4.46087 4.55171 4.73135 4.81916 4.87453 5.01977 5.10497 5.14209 5.33492 5.47262 5.57618 5.61037 5.68489 5.76521 5.80796 5.93515 5.96056 5.99474 6.03981 6.14190 6.41433 6.47790 6.55669 6.70382 6.76712 6.87588 6.90440 7.28094 7.45857 7.48214 7.67194 7.75013 7.84524 8.01175 8.28757 9.24807 9.85889 10.50940 11.43675 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.003680 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.926398 B = 7606.155110 C = 8871.936045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.456 5.456 3 O -0.007 6.007 4 C 0.039 3.961 5 C 0.592 3.408 6 O -0.476 6.476 7 N -0.707 5.707 8 C 0.145 3.855 9 H 0.119 0.881 10 C -0.112 4.112 11 C -0.116 4.116 12 H 0.084 0.916 13 C -0.129 4.129 14 C 0.157 3.843 15 H 0.067 0.933 16 C -0.138 4.138 17 N -0.594 5.594 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.280 1.280 25 H -0.291 1.291 26 C 0.173 3.827 27 C -0.243 4.243 28 C 0.482 3.518 29 O -0.524 6.524 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.398 0.602 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.251 0.749 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.760 -0.385 3.242 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.220 5.220 3 O -0.018 6.018 4 C -0.019 4.019 5 C 0.372 3.628 6 O -0.348 6.348 7 N -0.357 5.357 8 C 0.042 3.958 9 H 0.136 0.864 10 C -0.151 4.151 11 C -0.136 4.136 12 H 0.102 0.898 13 C -0.167 4.167 14 C 0.049 3.951 15 H 0.085 0.915 16 C -0.179 4.179 17 N -0.318 5.318 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.206 1.206 25 H -0.217 1.217 26 C 0.049 3.951 27 C -0.267 4.267 28 C 0.280 3.720 29 O -0.405 6.405 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -19.209 -1.155 3.079 19.489 hybrid contribution 0.278 -0.558 -0.030 0.624 sum -18.931 -1.714 3.049 19.252 Atomic orbital electron populations 1.22095 0.70809 1.05086 1.04662 1.46043 1.05802 0.99948 1.70193 1.83989 1.15448 1.21055 1.81348 1.23784 0.81344 0.96711 1.00052 1.16763 0.85364 0.81754 0.78880 1.91009 1.17751 1.78094 1.47941 1.46228 1.11309 1.05024 1.73171 1.21405 0.88384 0.87374 0.98587 0.86352 1.21977 0.98252 0.94713 1.00117 1.22818 0.96976 0.97131 0.96667 0.89778 1.23003 0.99320 0.98563 0.95838 1.21509 0.89394 0.90977 0.93262 0.91465 1.22645 0.98868 1.01547 0.94845 1.44642 1.21676 1.62515 1.03004 1.19011 0.94772 1.23532 0.97794 0.90558 1.24746 0.98756 1.00119 0.96581 1.69936 1.38622 1.43393 1.04894 0.86157 0.82572 0.80455 0.76986 1.21834 1.20563 1.21710 1.21367 0.89523 0.95727 0.88495 1.23352 0.99626 0.93533 1.10233 1.18349 0.86730 0.85472 0.81461 1.90961 1.79127 1.15901 1.54539 0.88373 0.89284 0.89300 0.76801 0.91937 0.92498 0.92200 0.91704 0.92027 0.93435 0.93893 0.92034 0.94930 0.78936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.62 11.18 59.85 0.67 1.29 16 2 N -0.46 -4.71 3.68 -69.77 -0.26 -4.96 16 3 O -0.01 -0.07 10.69 16.83 0.18 0.11 16 4 C 0.04 0.49 7.25 -36.18 -0.26 0.23 16 5 C 0.59 8.90 7.80 -12.16 -0.09 8.81 16 6 O -0.48 -9.40 16.54 5.37 0.09 -9.31 16 7 N -0.71 -9.28 5.06 -54.63 -0.28 -9.56 16 8 C 0.14 2.36 2.08 -67.92 -0.14 2.22 16 9 H 0.12 2.57 5.38 -51.93 -0.28 2.29 16 10 C -0.11 -1.58 4.96 -26.21 -0.13 -1.71 16 11 C -0.12 -1.91 4.32 -87.93 -0.38 -2.29 16 12 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.13 -2.04 6.18 -24.29 -0.15 -2.19 16 14 C 0.16 2.99 4.30 -65.61 -0.28 2.70 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.14 -2.33 5.28 -26.28 -0.14 -2.47 16 17 N -0.59 -14.20 2.42 -161.38 -0.39 -14.59 16 18 C -0.22 -6.08 10.28 -15.06 -0.15 -6.24 16 19 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 20 C -0.01 -0.16 5.45 -17.43 -0.10 -0.26 16 21 N -0.92 -26.66 10.48 55.49 0.58 -26.08 16 22 Si 0.91 22.54 29.56 -169.99 -5.02 17.52 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 C 0.17 3.91 4.17 -2.83 -0.01 3.90 16 27 C -0.24 -3.23 10.94 -38.70 -0.42 -3.65 16 28 C 0.48 6.57 8.02 -14.66 -0.12 6.45 16 29 O -0.52 -8.71 17.92 4.93 0.09 -8.62 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 3.80 8.42 -40.82 -0.34 3.46 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.64 7.98 -51.93 -0.41 0.23 16 36 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.67 8.00 -51.93 -0.42 0.25 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.06 1.59 6.92 -51.93 -0.36 1.23 16 42 H 0.03 0.82 6.63 -51.93 -0.34 0.47 16 43 H 0.19 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -34.11 350.33 -7.35 -41.47 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.91 Total: 1.97 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.71 Total: 6.79 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.34 Total: -55.20 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.36 Total: -17.83 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.11 -7.35 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047060531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.577 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds