Wall clock time and date at job start Tue Mar 31 2020 13:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 O 1.20917 * 124.56899 * 2 1 4 4 C 1.34171 * 112.19123 * 179.97438 * 3 2 1 5 5 C 1.48205 * 126.38545 * 179.97438 * 4 3 2 6 6 O 1.21495 * 120.00029 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99846 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99775 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.17979 * 34.55983 * 8 7 5 10 10 C 1.53030 * 109.32431 * 154.11344 * 8 7 5 11 11 C 1.53973 * 108.82626 * 175.67783 * 10 8 7 12 12 H 1.09002 * 112.99183 * 169.00355 * 11 10 8 13 13 C 1.55425 * 106.41581 * 293.81933 * 11 10 8 14 14 C 1.55175 * 100.35374 * 73.37717 * 13 11 10 15 15 H 1.08999 * 113.04903 * 162.99026 * 14 13 11 16 16 C 1.52985 * 109.32741 * 275.00176 * 8 7 5 17 17 N 1.47789 * 104.25247 * 40.55426 * 14 13 11 18 18 C 1.36929 * 125.85634 * 153.50524 * 17 14 13 19 19 H 1.07997 * 119.99916 * 5.76031 * 18 17 14 20 20 C 1.38809 * 120.00276 * 185.75240 * 18 17 14 21 21 N 1.31622 * 119.99732 * 7.26741 * 20 18 17 22 22 Si 1.86805 * 120.00383 * 187.26278 * 20 18 17 23 23 H 1.48492 * 109.47167 * 265.01564 * 22 20 18 24 24 H 1.48498 * 109.46807 * 25.01935 * 22 20 18 25 25 H 1.48498 * 109.46925 * 145.01237 * 22 20 18 26 26 C 1.47087 * 108.28737 * 333.77193 * 17 14 13 27 27 C 1.36316 * 107.22876 * 0.22737 * 4 3 2 28 28 C 1.34828 * 124.56323 * 179.97438 * 2 1 3 29 29 O 1.21984 * 127.14643 * 0.05644 * 28 2 1 30 30 H 1.09001 * 109.46894 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47483 * 120.02355 * 1 2 3 32 32 H 1.08998 * 109.47416 * 240.03199 * 1 2 3 33 33 H 0.96996 * 120.00200 * 0.02562 * 7 5 4 34 34 H 1.09005 * 109.58100 * 295.48090 * 10 8 7 35 35 H 1.08994 * 109.57863 * 55.74202 * 10 8 7 36 36 H 1.09002 * 111.23275 * 315.60476 * 13 11 10 37 37 H 1.08994 * 111.23116 * 191.15548 * 13 11 10 38 38 H 1.09001 * 109.53200 * 64.75873 * 16 8 7 39 39 H 1.09000 * 109.59363 * 304.56758 * 16 8 7 40 40 H 0.97005 * 119.99904 * 180.02562 * 21 20 18 41 41 H 1.08992 * 109.97545 * 120.22255 * 26 17 14 42 42 H 1.08999 * 109.97732 * 241.51076 * 26 17 14 43 43 H 1.08007 * 127.99489 * 179.73515 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7081 0.0006 5 6 4.5761 1.6850 0.0002 6 8 5.7265 1.2942 0.0003 7 7 4.3134 3.0069 -0.0003 8 6 5.4151 3.9726 -0.0001 9 1 6.2435 3.5709 -0.5836 10 6 4.9398 5.2832 -0.6311 11 6 6.0702 6.3235 -0.5268 12 1 5.8810 7.2186 -1.1195 13 6 6.2559 6.6201 0.9875 14 6 6.9545 5.3119 1.4442 15 1 7.4460 5.4062 2.4126 16 6 5.8782 4.2121 1.4382 17 7 7.9064 5.0084 0.3552 18 6 9.0700 4.2978 0.4819 19 1 9.3144 3.8250 1.4216 20 6 9.9355 4.1851 -0.5975 21 7 9.7116 4.8758 -1.6954 22 14 11.4178 3.0533 -0.4921 23 1 12.6086 3.8350 -0.0727 24 1 11.1532 1.9825 0.5022 25 1 11.6698 2.4425 -1.8219 26 6 7.3926 5.6060 -0.8867 27 6 3.5769 -0.6502 -0.0042 28 6 2.2299 -1.1103 0.0005 29 8 1.8471 -2.2685 0.0001 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3634 -0.5142 -0.8897 32 1 -0.3634 -0.5133 0.8902 33 1 3.3950 3.3189 0.0000 34 1 4.6933 5.1156 -1.6796 35 1 4.0582 5.6447 -0.1020 36 1 5.2948 6.7489 1.4853 37 1 6.8986 7.4863 1.1441 38 1 6.2962 3.2911 1.8446 39 1 5.0311 4.5278 2.0472 40 1 10.3162 4.7968 -2.4498 41 1 8.1126 6.3234 -1.2803 42 1 7.2021 4.8262 -1.6241 43 1 4.4812 -1.2407 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047060531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:19 Heat of formation + Delta-G solvation = 24.633466 kcal Electronic energy + Delta-G solvation = -27949.541014 eV Core-core repulsion = 23999.693087 eV Total energy + Delta-G solvation = -3949.847928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.26062 -41.64685 -40.26812 -39.39193 -36.32925 -35.43347 -34.71801 -33.43029 -32.34734 -31.47616 -30.14023 -28.72265 -27.16934 -25.28262 -24.89636 -24.54729 -22.79195 -21.60330 -21.18324 -20.40084 -19.58944 -19.52341 -18.89967 -18.29561 -17.61394 -16.74212 -16.52798 -16.25338 -16.13464 -16.00901 -15.60326 -15.24532 -15.05642 -14.86655 -14.55787 -14.24579 -14.12068 -13.82851 -13.66062 -13.46308 -13.37048 -13.19485 -12.96887 -12.61065 -12.48155 -12.18646 -11.93466 -11.82761 -11.63241 -11.42375 -11.19491 -11.15667 -11.11298 -10.91713 -10.66459 -10.17693 -9.71330 -8.79241 -7.78555 -5.13220 -0.64724 0.47862 1.35442 1.41773 1.44896 1.52803 1.56708 1.81834 2.21767 2.51229 3.35693 3.38386 3.63326 3.69178 3.82208 3.84683 3.93407 4.13445 4.28524 4.33812 4.40296 4.42012 4.53227 4.61032 4.61826 4.67132 4.70180 4.79600 4.84099 4.88630 5.11941 5.15952 5.25961 5.31799 5.39160 5.52096 5.55152 5.60202 5.72708 5.90626 6.17621 6.28562 6.43426 6.78877 6.91351 7.17295 7.86320 8.49599 9.28173 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.003680 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.926398 B = 7606.155110 C = 8871.936045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.442 5.442 3 O 0.022 5.978 4 C 0.049 3.951 5 C 0.597 3.403 6 O -0.533 6.533 7 N -0.684 5.684 8 C 0.151 3.849 9 H 0.057 0.943 10 C -0.102 4.102 11 C -0.104 4.104 12 H 0.110 0.890 13 C -0.112 4.112 14 C 0.140 3.860 15 H 0.062 0.938 16 C -0.127 4.127 17 N -0.614 5.614 18 C -0.226 4.226 19 H 0.071 0.929 20 C -0.063 4.063 21 N -0.945 5.945 22 Si 0.961 3.039 23 H -0.284 1.284 24 H -0.278 1.278 25 H -0.297 1.297 26 C 0.180 3.820 27 C -0.256 4.256 28 C 0.472 3.528 29 O -0.563 6.563 30 H 0.135 0.865 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.422 0.578 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.094 0.906 40 H 0.243 0.757 41 H 0.017 0.983 42 H -0.006 1.006 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.786 1.406 4.443 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.203 5.203 3 O 0.010 5.990 4 C -0.011 4.011 5 C 0.378 3.622 6 O -0.409 6.409 7 N -0.335 5.335 8 C 0.047 3.953 9 H 0.075 0.925 10 C -0.140 4.140 11 C -0.124 4.124 12 H 0.128 0.872 13 C -0.150 4.150 14 C 0.034 3.966 15 H 0.080 0.920 16 C -0.167 4.167 17 N -0.338 5.338 18 C -0.355 4.355 19 H 0.089 0.911 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.790 3.210 23 H -0.211 1.211 24 H -0.204 1.204 25 H -0.224 1.224 26 C 0.055 3.945 27 C -0.281 4.281 28 C 0.270 3.730 29 O -0.448 6.448 30 H 0.153 0.847 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.112 0.888 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.012 0.988 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.348 0.689 4.318 23.754 hybrid contribution 1.454 -1.091 -0.353 1.852 sum -21.894 -0.402 3.965 22.254 Atomic orbital electron populations 1.22639 0.67530 1.07882 1.05759 1.46380 1.07147 0.98986 1.67750 1.84009 1.14284 1.20620 1.80085 1.23069 0.81856 0.95505 1.00627 1.16886 0.85049 0.82397 0.77838 1.90997 1.20344 1.79094 1.50470 1.45913 1.11899 1.03863 1.71870 1.21068 0.87812 0.88893 0.97512 0.92524 1.21931 0.98713 0.92081 1.01233 1.22759 0.94037 0.98062 0.97528 0.87150 1.22967 1.01068 0.95930 0.95062 1.21870 0.89217 0.93851 0.91711 0.91975 1.22476 0.99434 0.99142 0.95697 1.44867 1.21528 1.62139 1.05262 1.19280 0.95896 1.23041 0.97326 0.91138 1.25416 1.01466 1.01992 0.96761 1.70145 1.39307 1.44861 1.05213 0.85312 0.80264 0.78972 0.76402 1.21080 1.20353 1.22392 1.21129 0.92013 0.93876 0.87442 1.23414 0.99970 0.94075 1.10661 1.18321 0.86998 0.85678 0.81955 1.90936 1.79667 1.17323 1.56866 0.84709 0.88303 0.88195 0.73924 0.91196 0.87181 0.87207 0.92296 0.95496 0.88789 0.94781 0.96483 0.98783 0.79467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.18 127.77 1.43 2.14 16 2 N -0.44 -7.88 3.68 -492.74 -1.82 -9.69 16 3 O 0.02 0.38 10.69 70.39 0.75 1.13 16 4 C 0.05 1.16 7.25 24.47 0.18 1.34 16 5 C 0.60 17.59 7.80 86.89 0.68 18.26 16 6 O -0.53 -22.03 16.54 -3.70 -0.06 -22.09 16 7 N -0.68 -16.16 5.06 -445.06 -2.25 -18.41 16 8 C 0.15 4.68 2.08 45.00 0.09 4.77 16 9 H 0.06 2.55 5.38 -2.39 -0.01 2.54 16 10 C -0.10 -2.41 4.96 30.93 0.15 -2.26 16 11 C -0.10 -3.14 4.32 -9.05 -0.04 -3.18 16 12 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 13 C -0.11 -3.11 6.18 32.17 0.20 -2.91 16 14 C 0.14 5.16 4.30 45.79 0.20 5.36 16 15 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 16 C -0.13 -4.03 5.28 30.89 0.16 -3.86 16 17 N -0.61 -30.27 2.42 -664.48 -1.61 -31.88 16 18 C -0.23 -12.91 10.28 84.03 0.86 -12.04 16 19 H 0.07 3.98 7.84 -2.91 -0.02 3.96 16 20 C -0.06 -3.73 5.45 84.86 0.46 -3.27 16 21 N -0.95 -57.90 10.48 21.65 0.23 -57.67 16 22 Si 0.96 48.45 29.56 68.60 2.03 50.48 16 23 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 26 C 0.18 8.38 4.17 86.85 0.36 8.75 16 27 C -0.26 -6.82 10.94 22.84 0.25 -6.57 16 28 C 0.47 12.46 8.02 85.25 0.68 13.15 16 29 O -0.56 -18.68 17.92 -5.26 -0.09 -18.78 16 30 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.42 5.92 8.42 -92.71 -0.78 5.14 16 34 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.11 1.58 7.98 -2.39 -0.02 1.56 16 36 H 0.11 2.05 7.75 -2.39 -0.02 2.03 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 2.14 8.00 -2.39 -0.02 2.12 16 40 H 0.24 14.60 8.31 -92.70 -0.77 13.83 16 41 H 0.02 0.93 6.92 -2.39 -0.02 0.91 16 42 H -0.01 -0.32 6.63 -2.39 -0.02 -0.33 16 43 H 0.19 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -83.50 350.33 3.11 -80.39 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.27 Total: 6.83 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 5.67 Total: 19.68 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -5.45 Total: -117.65 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: 0.60 Total: -39.73 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -83.50 3.11 -80.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047060531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.021 kcal (2) G-P(sol) polarization free energy of solvation -83.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds