Wall clock time and date at job start Tue Mar 31 2020 13:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35355 * 117.00492 * 2 1 4 4 N 1.30544 * 125.44912 * 179.97438 * 3 2 1 5 5 C 1.36333 * 108.38304 * 180.02562 * 4 3 2 6 6 C 1.47365 * 126.41451 * 179.97438 * 5 4 3 7 7 O 1.21617 * 119.99995 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99613 * 0.02566 * 6 5 4 9 9 C 1.46502 * 119.99462 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.32637 * 34.65110 * 9 8 6 11 11 C 1.54491 * 109.19162 * 153.45697 * 9 8 6 12 12 C 1.53963 * 108.07475 * 175.05454 * 11 9 8 13 13 H 1.09003 * 112.99561 * 169.18647 * 12 11 9 14 14 C 1.55425 * 107.20262 * 294.57544 * 12 11 9 15 15 C 1.55177 * 100.35000 * 73.66396 * 14 12 11 16 16 H 1.09002 * 112.48517 * 163.35085 * 15 14 12 17 17 C 1.52984 * 109.32787 * 275.00007 * 9 8 6 18 18 N 1.47868 * 104.25530 * 40.57388 * 15 14 12 19 19 C 1.36938 * 125.89874 * 153.49999 * 18 15 14 20 20 H 1.08005 * 120.00404 * 0.02562 * 19 18 15 21 21 C 1.38815 * 120.00117 * 180.02562 * 19 18 15 22 22 N 1.31620 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00108 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47678 * 59.99612 * 23 21 19 25 25 H 1.48504 * 109.47163 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47072 * 299.99466 * 23 21 19 27 27 C 1.47080 * 108.24539 * 333.50192 * 18 15 14 28 28 C 1.35912 * 107.17086 * 0.22664 * 5 4 3 29 29 O 1.34204 * 125.44241 * 0.03617 * 3 2 1 30 30 H 1.09001 * 109.47582 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47378 * 300.00486 * 1 2 3 32 32 H 1.09007 * 109.47225 * 60.00307 * 1 2 3 33 33 H 0.96998 * 120.00347 * 0.02562 * 8 6 5 34 34 H 1.09005 * 109.04151 * 56.00517 * 11 9 8 35 35 H 1.09004 * 110.85790 * 295.15885 * 11 9 8 36 36 H 1.08997 * 111.23619 * 191.43950 * 14 12 11 37 37 H 1.08998 * 111.23586 * 315.84434 * 14 12 11 38 38 H 1.08999 * 109.53140 * 64.75949 * 17 9 8 39 39 H 1.09001 * 109.53107 * 304.53414 * 17 9 8 40 40 H 0.96997 * 120.00058 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.97671 * 241.75951 * 27 18 15 42 42 H 1.09000 * 109.97448 * 120.51558 * 27 18 15 43 43 H 1.08004 * 126.45485 * 179.74696 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5701 2.7405 0.0009 6 6 4.8892 3.3975 0.0020 7 8 4.9640 4.6114 0.0027 8 7 6.0128 2.6531 0.0022 9 6 7.3241 3.3062 0.0028 10 1 7.2696 4.2243 0.5878 11 6 8.3605 2.3642 0.6549 12 6 9.7476 3.0203 0.5300 13 1 10.5111 2.5186 1.1246 14 6 10.0929 3.0807 -0.9842 15 6 9.1476 4.2235 -1.4404 16 1 9.4260 4.6321 -2.4118 17 6 7.7217 3.6449 -1.4351 18 7 9.2279 5.2195 -0.3503 19 6 9.0121 6.5659 -0.4754 20 1 8.7573 6.9850 -1.4377 21 6 9.1210 7.3924 0.6346 22 7 9.4311 6.8818 1.8074 23 14 8.8260 9.2290 0.4640 24 1 7.4439 9.4653 -0.0249 25 1 9.0017 9.8834 1.7855 26 1 9.7976 9.7987 -0.5039 27 6 9.5795 4.5151 0.8920 28 6 2.3603 3.3599 0.0058 29 8 1.4227 2.3958 0.0007 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 5.9531 1.6849 0.0013 34 1 8.3579 1.4115 0.1252 35 1 8.1275 2.1998 1.7070 36 1 11.1383 3.3469 -1.1404 37 1 9.8486 2.1426 -1.4825 38 1 7.0281 4.3811 -1.8412 39 1 7.6930 2.7410 -2.0437 40 1 9.5068 7.4592 2.5830 41 1 8.7819 4.6331 1.6256 42 1 10.5140 4.9089 1.2917 43 1 2.1850 4.4256 0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047119834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:45 Heat of formation + Delta-G solvation = -4.611754 kcal Electronic energy + Delta-G solvation = -27716.943994 eV Core-core repulsion = 23765.827898 eV Total energy + Delta-G solvation = -3951.116096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.61186 -39.93327 -39.15207 -38.43606 -35.06956 -34.44266 -32.71969 -30.61347 -30.40834 -29.44014 -28.20094 -27.78579 -25.23177 -24.39849 -23.04292 -22.67541 -21.49595 -20.30696 -19.44989 -19.20214 -18.37351 -17.73726 -17.21748 -16.90057 -16.53843 -15.79233 -15.56474 -15.47862 -14.64127 -14.44988 -14.27699 -13.78922 -13.72882 -13.45691 -12.81832 -12.67772 -12.63189 -12.30316 -11.98670 -11.76098 -11.70855 -11.52570 -11.17603 -11.15861 -10.95974 -10.67209 -10.61121 -10.46240 -9.98583 -9.93742 -9.68679 -9.63542 -9.47444 -9.24485 -8.89277 -8.50844 -8.46638 -6.71359 -5.57861 -2.89966 1.02432 1.67250 1.94827 2.52426 3.39130 3.50682 3.51236 3.55264 3.56771 4.41753 4.49948 4.56056 4.62328 4.76150 4.88125 5.09121 5.26439 5.32660 5.34451 5.48894 5.62651 5.68671 5.70515 5.95523 5.98378 6.11717 6.16372 6.17896 6.21259 6.31179 6.36135 6.64184 6.69230 6.75408 6.92357 6.95320 7.04926 7.11111 7.32578 7.68433 7.69778 7.89986 7.94755 8.37416 8.52737 9.34945 9.95311 10.61754 11.54066 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003451 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.867370 B = 8110.537335 C = 9260.447446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.246 6.246 3 C 0.375 3.625 4 N -0.454 5.454 5 C -0.040 4.040 6 C 0.593 3.407 7 O -0.516 6.516 8 N -0.707 5.707 9 C 0.145 3.855 10 H 0.116 0.884 11 C -0.111 4.111 12 C -0.119 4.119 13 H 0.081 0.919 14 C -0.128 4.128 15 C 0.158 3.842 16 H 0.065 0.935 17 C -0.135 4.135 18 N -0.595 5.595 19 C -0.220 4.220 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.924 5.924 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.287 1.287 27 C 0.180 3.820 28 C -0.002 4.002 29 O -0.227 6.227 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 -15.449 -3.454 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.153 6.153 3 C 0.128 3.872 4 N -0.200 5.200 5 C -0.159 4.159 6 C 0.376 3.624 7 O -0.391 6.391 8 N -0.356 5.356 9 C 0.042 3.958 10 H 0.134 0.866 11 C -0.149 4.149 12 C -0.139 4.139 13 H 0.099 0.901 14 C -0.167 4.167 15 C 0.049 3.951 16 H 0.083 0.917 17 C -0.176 4.176 18 N -0.319 5.319 19 C -0.348 4.348 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.572 5.572 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.214 1.214 27 C 0.055 3.945 28 C -0.074 4.074 29 O -0.118 6.118 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.417 -15.072 -3.281 21.114 hybrid contribution -1.164 0.976 -0.016 1.519 sum -15.581 -14.095 -3.297 21.268 Atomic orbital electron populations 1.23286 0.75240 1.05543 1.03007 1.86371 1.23554 1.16000 1.89418 1.23368 0.85714 0.79557 0.98529 1.71100 1.09642 1.15989 1.23293 1.21946 0.96357 0.88058 1.09515 1.16678 0.81848 0.86253 0.77591 1.90947 1.86242 1.12345 1.49611 1.46041 1.05987 1.10204 1.73356 1.21565 0.78841 0.97438 0.97943 0.86597 1.22206 0.95342 0.97369 0.99977 1.22832 0.94859 0.99752 0.96471 0.90110 1.22978 0.99629 0.98103 0.95963 1.21510 0.91360 0.89185 0.93046 0.91682 1.22593 1.00460 0.99323 0.95226 1.44614 1.81594 1.02572 1.03138 1.18967 1.39936 0.81131 0.94774 0.90669 1.24729 1.02084 0.97917 0.95579 1.69933 1.54868 1.33462 0.98890 0.86235 0.78018 0.85327 0.76430 1.21183 1.21783 1.21400 1.21315 0.99949 0.84545 0.88655 1.25022 0.84936 0.93777 1.03624 1.84372 1.39592 1.15845 1.72018 0.86373 0.91431 0.91439 0.76535 0.92758 0.91817 0.91855 0.92196 0.92163 0.93677 0.93910 0.93554 0.93783 0.74671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.73 101.05 1.08 1.20 16 2 O -0.25 -2.37 10.55 -40.99 -0.43 -2.80 16 3 C 0.37 4.50 8.98 52.22 0.47 4.97 16 4 N -0.45 -6.50 11.10 -11.72 -0.13 -6.63 16 5 C -0.04 -0.59 6.99 -82.99 -0.58 -1.17 16 6 C 0.59 10.72 7.77 -12.54 -0.10 10.62 16 7 O -0.52 -11.38 16.54 5.26 0.09 -11.29 16 8 N -0.71 -11.94 5.06 -54.14 -0.27 -12.22 16 9 C 0.14 2.78 2.09 -67.16 -0.14 2.64 16 10 H 0.12 2.85 5.36 -51.93 -0.28 2.57 16 11 C -0.11 -1.84 5.11 -25.45 -0.13 -1.97 16 12 C -0.12 -2.19 4.27 -87.93 -0.38 -2.57 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.13 -2.24 6.19 -24.29 -0.15 -2.39 16 15 C 0.16 3.25 4.30 -65.57 -0.28 2.97 16 16 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.13 -2.60 5.30 -26.28 -0.14 -2.74 16 18 N -0.59 -15.06 2.43 -161.31 -0.39 -15.45 16 19 C -0.22 -6.24 10.30 -15.06 -0.16 -6.39 16 20 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -27.67 10.35 55.49 0.57 -27.10 16 23 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.18 4.34 4.09 -2.83 -0.01 4.32 16 28 C 0.00 -0.02 11.93 29.90 0.36 0.34 16 29 O -0.23 -2.49 10.20 -17.74 -0.18 -2.67 16 30 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.40 5.85 8.34 -40.82 -0.34 5.51 16 34 H 0.05 0.77 8.01 -51.93 -0.42 0.35 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.05 1.25 6.14 -51.93 -0.32 0.93 16 42 H 0.04 1.19 7.39 -51.93 -0.38 0.80 16 43 H 0.24 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -34.30 351.00 -6.64 -40.94 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.91 Total: 4.37 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -0.25 Total: 9.52 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.22 Total: -61.39 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.53 Total: -16.76 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.30 -6.64 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047119834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.326 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds