Wall clock time and date at job start Tue Mar 31 2020 13:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35355 * 117.00492 * 2 1 4 4 N 1.30544 * 125.44912 * 179.97438 * 3 2 1 5 5 C 1.36333 * 108.38304 * 180.02562 * 4 3 2 6 6 C 1.47365 * 126.41451 * 179.97438 * 5 4 3 7 7 O 1.21617 * 119.99995 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99613 * 0.02566 * 6 5 4 9 9 C 1.46502 * 119.99462 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.32637 * 34.65110 * 9 8 6 11 11 C 1.54491 * 109.19162 * 153.45697 * 9 8 6 12 12 C 1.53963 * 108.07475 * 175.05454 * 11 9 8 13 13 H 1.09003 * 112.99561 * 169.18647 * 12 11 9 14 14 C 1.55425 * 107.20262 * 294.57544 * 12 11 9 15 15 C 1.55177 * 100.35000 * 73.66396 * 14 12 11 16 16 H 1.09002 * 112.48517 * 163.35085 * 15 14 12 17 17 C 1.52984 * 109.32787 * 275.00007 * 9 8 6 18 18 N 1.47868 * 104.25530 * 40.57388 * 15 14 12 19 19 C 1.36938 * 125.89874 * 153.49999 * 18 15 14 20 20 H 1.08005 * 120.00404 * 0.02562 * 19 18 15 21 21 C 1.38815 * 120.00117 * 180.02562 * 19 18 15 22 22 N 1.31620 * 119.99777 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00108 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47678 * 59.99612 * 23 21 19 25 25 H 1.48504 * 109.47163 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47072 * 299.99466 * 23 21 19 27 27 C 1.47080 * 108.24539 * 333.50192 * 18 15 14 28 28 C 1.35912 * 107.17086 * 0.22664 * 5 4 3 29 29 O 1.34204 * 125.44241 * 0.03617 * 3 2 1 30 30 H 1.09001 * 109.47582 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47378 * 300.00486 * 1 2 3 32 32 H 1.09007 * 109.47225 * 60.00307 * 1 2 3 33 33 H 0.96998 * 120.00347 * 0.02562 * 8 6 5 34 34 H 1.09005 * 109.04151 * 56.00517 * 11 9 8 35 35 H 1.09004 * 110.85790 * 295.15885 * 11 9 8 36 36 H 1.08997 * 111.23619 * 191.43950 * 14 12 11 37 37 H 1.08998 * 111.23586 * 315.84434 * 14 12 11 38 38 H 1.08999 * 109.53140 * 64.75949 * 17 9 8 39 39 H 1.09001 * 109.53107 * 304.53414 * 17 9 8 40 40 H 0.96997 * 120.00058 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.97671 * 241.75951 * 27 18 15 42 42 H 1.09000 * 109.97448 * 120.51558 * 27 18 15 43 43 H 1.08004 * 126.45485 * 179.74696 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5701 2.7405 0.0009 6 6 4.8892 3.3975 0.0020 7 8 4.9640 4.6114 0.0027 8 7 6.0128 2.6531 0.0022 9 6 7.3241 3.3062 0.0028 10 1 7.2696 4.2243 0.5878 11 6 8.3605 2.3642 0.6549 12 6 9.7476 3.0203 0.5300 13 1 10.5111 2.5186 1.1246 14 6 10.0929 3.0807 -0.9842 15 6 9.1476 4.2235 -1.4404 16 1 9.4260 4.6321 -2.4118 17 6 7.7217 3.6449 -1.4351 18 7 9.2279 5.2195 -0.3503 19 6 9.0121 6.5659 -0.4754 20 1 8.7573 6.9850 -1.4377 21 6 9.1210 7.3924 0.6346 22 7 9.4311 6.8818 1.8074 23 14 8.8260 9.2290 0.4640 24 1 7.4439 9.4653 -0.0249 25 1 9.0017 9.8834 1.7855 26 1 9.7976 9.7987 -0.5039 27 6 9.5795 4.5151 0.8920 28 6 2.3603 3.3599 0.0058 29 8 1.4227 2.3958 0.0007 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 5.9531 1.6849 0.0013 34 1 8.3579 1.4115 0.1252 35 1 8.1275 2.1998 1.7070 36 1 11.1383 3.3469 -1.1404 37 1 9.8486 2.1426 -1.4825 38 1 7.0281 4.3811 -1.8412 39 1 7.6930 2.7410 -2.0437 40 1 9.5068 7.4592 2.5830 41 1 8.7819 4.6331 1.6256 42 1 10.5140 4.9089 1.2917 43 1 2.1850 4.4256 0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047119834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:44 Heat of formation + Delta-G solvation = -32.693149 kcal Electronic energy + Delta-G solvation = -27718.161695 eV Core-core repulsion = 23765.827898 eV Total energy + Delta-G solvation = -3952.333796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.57618 -41.47266 -40.12968 -39.69957 -36.19012 -35.99214 -34.64093 -32.34223 -31.59739 -30.98107 -29.77929 -28.30587 -27.17309 -25.59397 -24.88906 -23.63695 -22.74798 -21.65483 -21.19553 -20.49153 -19.71060 -18.88406 -18.60706 -18.35202 -17.47003 -17.32902 -16.60532 -16.34939 -16.23044 -16.07120 -15.74634 -15.42631 -15.18598 -14.74761 -14.31755 -14.12137 -13.77918 -13.43389 -13.36409 -13.24269 -13.10277 -12.97075 -12.96575 -12.60105 -12.49733 -12.17850 -12.09214 -11.96970 -11.87439 -11.62049 -11.53873 -11.17617 -11.11169 -10.86585 -10.63618 -10.09086 -9.77118 -8.79383 -7.78632 -5.10573 -0.00998 0.83703 0.89946 1.42376 1.47420 1.52011 1.66367 2.13033 2.19144 2.52765 3.35168 3.40176 3.67383 3.72000 3.83496 3.90674 4.08013 4.14082 4.20248 4.25167 4.39147 4.40332 4.45300 4.53980 4.59457 4.65069 4.68218 4.69469 4.80215 4.85681 5.12296 5.21148 5.29424 5.36591 5.38257 5.50162 5.53805 5.57390 5.63541 5.76553 5.87804 6.26831 6.30136 6.60689 7.17580 7.18089 7.86511 8.51252 9.31287 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003451 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.867370 B = 8110.537335 C = 9260.447446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.252 6.252 3 C 0.384 3.616 4 N -0.478 5.478 5 C -0.069 4.069 6 C 0.592 3.408 7 O -0.569 6.569 8 N -0.695 5.695 9 C 0.152 3.848 10 H 0.054 0.946 11 C -0.101 4.101 12 C -0.107 4.107 13 H 0.109 0.891 14 C -0.111 4.111 15 C 0.142 3.858 16 H 0.066 0.934 17 C -0.123 4.123 18 N -0.613 5.613 19 C -0.228 4.228 20 H 0.073 0.927 21 C -0.067 4.067 22 N -0.950 5.950 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.189 3.811 28 C 0.024 3.976 29 O -0.213 6.213 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.084 0.916 40 H 0.243 0.757 41 H 0.005 0.995 42 H 0.003 0.997 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.103 -18.380 -4.740 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.160 6.160 3 C 0.137 3.863 4 N -0.224 5.224 5 C -0.187 4.187 6 C 0.377 3.623 7 O -0.448 6.448 8 N -0.344 5.344 9 C 0.048 3.952 10 H 0.072 0.928 11 C -0.139 4.139 12 C -0.127 4.127 13 H 0.127 0.873 14 C -0.149 4.149 15 C 0.035 3.965 16 H 0.084 0.916 17 C -0.163 4.163 18 N -0.337 5.337 19 C -0.357 4.357 20 H 0.091 0.909 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.798 3.202 24 H -0.213 1.213 25 H -0.220 1.220 26 H -0.200 1.200 27 C 0.064 3.936 28 C -0.049 4.049 29 O -0.104 6.104 30 H 0.166 0.834 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.043 0.957 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -15.609 -18.080 -4.604 24.325 hybrid contribution -0.959 1.823 0.347 2.089 sum -16.568 -16.257 -4.257 23.599 Atomic orbital electron populations 1.23721 0.72585 1.07864 1.03876 1.86419 1.26147 1.14519 1.88944 1.23476 0.85504 0.80345 0.97005 1.70977 1.11135 1.15456 1.24867 1.21464 0.95469 0.88917 1.12870 1.17065 0.83159 0.85740 0.76308 1.90916 1.87182 1.14617 1.52103 1.45863 1.05077 1.10777 1.72732 1.21248 0.80723 0.96145 0.97126 0.92789 1.22154 0.92948 0.98126 1.00643 1.22785 0.96849 0.95361 0.97661 0.87333 1.22937 0.98759 0.98361 0.94870 1.21852 0.93227 0.89494 0.91905 0.91576 1.22424 0.98445 0.99821 0.95657 1.44843 1.81298 1.02472 1.05127 1.19293 1.38664 0.83197 0.94591 0.90932 1.25502 1.03025 1.01931 0.95532 1.70162 1.56366 1.34214 0.99202 0.85292 0.77809 0.80812 0.76323 1.21342 1.21996 1.20019 1.21054 0.96234 0.88661 0.87665 1.25447 0.84200 0.94689 1.00589 1.84417 1.38853 1.15515 1.71639 0.83378 0.90617 0.90516 0.74785 0.88240 0.91547 0.91683 0.87701 0.95695 0.89753 0.94816 0.97697 0.97851 0.72495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.73 113.37 1.22 1.30 16 2 O -0.25 -4.24 10.55 -64.24 -0.68 -4.92 16 3 C 0.38 8.47 8.98 130.43 1.17 9.64 16 4 N -0.48 -13.06 11.10 -419.40 -4.65 -17.71 16 5 C -0.07 -2.04 6.99 40.31 0.28 -1.76 16 6 C 0.59 21.89 7.77 86.65 0.67 22.57 16 7 O -0.57 -26.48 16.54 -4.08 -0.07 -26.54 16 8 N -0.69 -23.25 5.06 -443.46 -2.24 -25.49 16 9 C 0.15 5.82 2.09 45.49 0.09 5.91 16 10 H 0.05 2.81 5.36 -2.39 -0.01 2.80 16 11 C -0.10 -3.11 5.11 31.43 0.16 -2.95 16 12 C -0.11 -3.73 4.27 -9.05 -0.04 -3.77 16 13 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 14 C -0.11 -3.52 6.19 32.18 0.20 -3.32 16 15 C 0.14 5.78 4.30 45.77 0.20 5.97 16 16 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 17 C -0.12 -4.64 5.30 30.89 0.16 -4.47 16 18 N -0.61 -32.18 2.43 -664.25 -1.62 -33.80 16 19 C -0.23 -13.53 10.30 84.03 0.87 -12.67 16 20 H 0.07 4.21 7.83 -2.91 -0.02 4.18 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 22 N -0.95 -60.21 10.35 21.65 0.22 -59.99 16 23 Si 0.97 49.35 29.55 68.60 2.03 51.37 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 25 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 26 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 27 C 0.19 9.48 4.09 86.85 0.36 9.83 16 28 C 0.02 0.54 11.93 67.28 0.80 1.34 16 29 O -0.21 -4.23 10.20 18.94 0.19 -4.04 16 30 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.42 11.39 8.34 -92.71 -0.77 10.62 16 34 H 0.10 2.27 8.01 -2.38 -0.02 2.25 16 35 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.10 2.47 7.79 -2.39 -0.02 2.46 16 38 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 2.53 8.00 -2.39 -0.02 2.51 16 40 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.00 0.28 6.14 -2.39 -0.01 0.27 16 42 H 0.00 0.19 7.39 -2.39 -0.02 0.17 16 43 H 0.26 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -81.90 351.00 0.07 -81.84 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.27 Total: 15.26 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 6.61 Total: 24.01 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -8.29 Total: -136.99 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.55 Total: -35.50 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.03 Total: 51.37 kcal Total: -81.90 0.07 -81.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047119834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.143 kcal (2) G-P(sol) polarization free energy of solvation -81.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds