Wall clock time and date at job start Tue Mar 31 2020 13:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34788 * 120.00166 * 2 1 4 4 O 1.21684 * 120.00109 * 185.35307 * 3 2 1 5 5 C 1.46719 * 119.99682 * 5.35667 * 3 2 1 6 6 C 1.36340 * 126.64585 * 184.20598 * 5 3 2 7 7 N 1.33692 * 107.45512 * 179.83807 * 6 5 3 8 8 C 1.30608 * 108.99388 * 0.43286 * 7 6 5 9 9 C 1.50700 * 125.42161 * 179.71029 * 8 7 6 10 10 C 1.53002 * 117.50063 * 8.76703 * 9 8 7 11 11 C 1.53001 * 117.49706 * 300.10817 * 9 8 7 12 12 O 1.33665 * 109.15640 * 359.72938 * 8 7 6 13 13 C 1.46500 * 120.00293 * 180.02562 * 2 1 3 14 14 H 1.08995 * 110.64395 * 178.30734 * 13 2 1 15 15 C 1.54322 * 110.71934 * 301.45403 * 13 2 1 16 16 N 1.47019 * 107.26944 * 140.73102 * 15 13 2 17 17 C 1.36941 * 125.64627 * 181.07724 * 16 15 13 18 18 H 1.08006 * 119.99727 * 148.10853 * 17 16 15 19 19 C 1.38809 * 120.00187 * 328.10699 * 17 16 15 20 20 N 1.31618 * 119.99920 * 156.60284 * 19 17 16 21 21 Si 1.86801 * 119.99938 * 336.60495 * 19 17 16 22 22 H 1.48496 * 109.47209 * 89.61191 * 21 19 17 23 23 H 1.48503 * 109.46844 * 209.61173 * 21 19 17 24 24 H 1.48501 * 109.47121 * 329.61200 * 21 19 17 25 25 C 1.47423 * 108.70880 * 1.05866 * 16 15 13 26 26 C 1.54913 * 104.92302 * 335.81682 * 25 16 15 27 27 H 1.08997 * 111.00353 * 278.98563 * 26 25 16 28 28 O 1.42907 * 111.00315 * 155.13791 * 26 25 16 29 29 H 1.09008 * 109.46643 * 272.61333 * 1 2 3 30 30 H 1.08999 * 109.47474 * 32.60943 * 1 2 3 31 31 H 1.08997 * 109.46925 * 152.61399 * 1 2 3 32 32 H 1.08009 * 126.26877 * 359.97438 * 6 5 3 33 33 H 1.09006 * 115.55071 * 154.43658 * 9 8 7 34 34 H 1.08998 * 117.49314 * 0.02562 * 10 9 8 35 35 H 1.09004 * 117.49990 * 145.01987 * 10 9 8 36 36 H 1.09003 * 117.49549 * 214.98011 * 11 9 8 37 37 H 1.08997 * 117.50094 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.88005 * 21.31253 * 15 13 2 39 39 H 1.09005 * 110.01033 * 260.21929 * 15 13 2 40 40 H 0.97006 * 120.00095 * 180.02562 * 20 19 17 41 41 H 1.08996 * 110.36621 * 94.70452 * 25 16 15 42 42 H 1.08994 * 110.37186 * 216.92741 * 25 16 15 43 43 H 0.96698 * 113.99789 * 61.45170 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1696 -0.0983 5 6 1.4101 2.4351 0.1186 6 6 1.9421 3.6887 0.0536 7 7 0.9383 4.5587 0.2047 8 6 -0.1763 3.8976 0.3675 9 6 -1.5352 4.5146 0.5766 10 6 -1.6588 6.0290 0.3973 11 6 -1.7212 5.4163 1.7986 12 8 0.0803 2.5867 0.3197 13 6 2.1975 -1.2687 -0.0006 14 1 3.2726 -1.0916 -0.0306 15 6 1.8183 -2.1187 1.2304 16 7 1.7366 -3.5178 0.7863 17 6 1.4049 -4.5873 1.5746 18 1 0.8812 -5.4303 1.1485 19 6 1.7418 -4.5879 2.9212 20 7 1.0664 -5.3355 3.7681 21 14 3.1535 -3.5277 3.5313 22 1 2.6388 -2.1865 3.9073 23 1 3.7775 -4.1686 4.7167 24 1 4.1666 -3.3851 2.4549 25 6 2.0706 -3.5788 -0.6484 26 6 1.7543 -2.1632 -1.1921 27 1 0.6885 -2.0500 -1.3906 28 8 2.5240 -1.8802 -2.3625 29 1 -0.3633 0.0469 1.0267 30 1 -0.3634 0.8656 -0.5538 31 1 -0.3633 -0.9125 -0.4727 32 1 2.9834 3.9340 -0.0951 33 1 -2.3824 3.9007 0.2705 34 1 -0.7571 6.5790 0.1276 35 1 -2.5873 6.4116 -0.0266 36 1 -2.6908 5.3960 2.2962 37 1 -0.8608 5.5630 2.4515 38 1 0.8526 -1.7965 1.6201 39 1 2.5815 -2.0187 2.0022 40 1 1.3015 -5.3357 4.7093 41 1 3.1275 -3.8092 -0.7823 42 1 1.4539 -4.3244 -1.1501 43 1 2.3511 -2.4797 -3.1013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047413109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:45 Heat of formation + Delta-G solvation = 18.939579 kcal Electronic energy + Delta-G solvation = -27620.850514 eV Core-core repulsion = 23670.755680 eV Total energy + Delta-G solvation = -3950.094833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.67026 -40.05571 -38.18127 -37.68202 -35.69256 -35.27805 -34.65549 -32.18348 -30.73804 -29.09529 -27.91061 -26.94536 -25.27851 -24.32689 -23.37923 -22.81381 -21.22411 -21.01519 -20.71281 -19.59316 -18.02394 -17.50875 -17.25476 -17.05149 -16.88431 -16.20649 -15.38252 -15.24048 -15.03021 -14.92909 -14.43490 -14.06502 -13.66374 -13.61256 -13.25202 -12.84740 -12.80508 -12.75258 -12.35851 -12.20696 -12.05117 -12.00186 -11.82903 -11.77210 -11.24567 -11.16918 -11.10282 -10.89693 -10.74418 -10.50721 -10.37909 -10.18204 -9.81489 -9.59739 -9.10357 -8.65686 -8.54474 -7.05879 -6.10949 -3.49629 0.61543 2.05641 2.11624 2.85699 3.00328 3.29240 3.35041 3.43158 3.49723 3.62555 4.17482 4.23897 4.35375 4.45740 4.45938 4.60121 4.74772 4.90434 4.96094 5.05999 5.15165 5.19286 5.22376 5.29147 5.35072 5.36743 5.39286 5.52695 5.56849 5.69286 5.70340 5.77482 5.82089 5.98444 6.23616 6.29449 6.40572 6.54616 6.61930 7.17796 7.37368 7.67313 7.79796 7.93029 8.19721 8.70022 9.54266 10.05233 11.04534 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.003571 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.919071 B = 7838.797902 C = 8521.640577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.589 5.589 3 C 0.607 3.393 4 O -0.513 6.513 5 C -0.101 4.101 6 C 0.052 3.948 7 N -0.488 5.488 8 C 0.241 3.759 9 C -0.087 4.087 10 C -0.145 4.145 11 C -0.152 4.152 12 O -0.177 6.177 13 C 0.136 3.864 14 H 0.118 0.882 15 C 0.119 3.881 16 N -0.600 5.600 17 C -0.253 4.253 18 H 0.089 0.911 19 C 0.038 3.962 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.271 1.271 25 C 0.101 3.899 26 C 0.078 3.922 27 H 0.072 0.928 28 O -0.558 6.558 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.198 0.802 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.138 19.408 -9.259 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.320 5.320 3 C 0.393 3.607 4 O -0.390 6.390 5 C -0.156 4.156 6 C -0.091 4.091 7 N -0.217 5.217 8 C 0.037 3.963 9 C -0.107 4.107 10 C -0.182 4.182 11 C -0.190 4.190 12 O -0.064 6.064 13 C 0.033 3.967 14 H 0.135 0.865 15 C -0.007 4.007 16 N -0.329 5.329 17 C -0.380 4.380 18 H 0.107 0.893 19 C -0.164 4.164 20 N -0.537 5.537 21 Si 0.705 3.295 22 H -0.212 1.212 23 H -0.225 1.225 24 H -0.196 1.196 25 C -0.025 4.025 26 C 0.017 3.983 27 H 0.090 0.910 28 O -0.362 6.362 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.215 0.785 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.332 20.309 -8.705 22.986 hybrid contribution 0.547 -0.797 0.218 0.991 sum -5.785 19.512 -8.487 22.050 Atomic orbital electron populations 1.21984 0.78696 1.03369 1.02907 1.47601 1.07531 1.05353 1.71531 1.16428 0.86019 0.80856 0.77355 1.90890 1.11955 1.85585 1.50579 1.23190 0.80648 0.97875 1.13891 1.23572 1.00304 0.86721 0.98506 1.70345 0.97859 1.34289 1.19167 1.25424 0.96355 0.77520 0.97047 1.20181 0.88814 0.94187 1.07478 1.23128 1.04714 0.91312 0.99024 1.23166 1.04360 1.00518 0.90973 1.84647 1.25347 1.28315 1.68090 1.22265 0.98417 0.81273 0.94771 0.86457 1.21884 0.99802 0.85442 0.93566 1.44456 1.81357 1.01505 1.05592 1.18527 1.31630 0.97456 0.90400 0.89325 1.25295 0.97706 0.97166 0.96183 1.69848 1.38669 1.42193 1.02983 0.86982 0.85119 0.79489 0.77913 1.21178 1.22460 1.19644 1.22346 0.98873 0.93916 0.87374 1.23447 0.94314 0.95555 0.84949 0.91028 1.86524 1.67123 1.58759 1.23839 0.91677 0.90569 0.89790 0.78523 0.84495 0.86987 0.87298 0.87144 0.87877 0.93259 0.94698 0.92416 0.94382 0.92590 0.77680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 8.30 59.84 0.50 1.46 16 2 N -0.59 -9.76 2.89 -173.19 -0.50 -10.26 16 3 C 0.61 10.36 7.64 -12.83 -0.10 10.26 16 4 O -0.51 -10.11 16.28 5.20 0.08 -10.02 16 5 C -0.10 -1.46 6.74 -36.84 -0.25 -1.71 16 6 C 0.05 0.69 11.66 -17.43 -0.20 0.49 16 7 N -0.49 -6.14 10.79 -10.81 -0.12 -6.26 16 8 C 0.24 2.74 7.86 -12.80 -0.10 2.64 16 9 C -0.09 -0.66 6.33 -91.77 -0.58 -1.24 16 10 C -0.14 -0.85 10.13 -26.69 -0.27 -1.12 16 11 C -0.15 -0.93 10.24 -26.69 -0.27 -1.21 16 12 O -0.18 -2.26 7.65 4.42 0.03 -2.23 16 13 C 0.14 2.56 3.10 -65.94 -0.20 2.36 16 14 H 0.12 2.44 7.00 -51.93 -0.36 2.07 16 15 C 0.12 2.60 5.68 -3.07 -0.02 2.58 16 16 N -0.60 -14.18 2.99 -170.08 -0.51 -14.69 16 17 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 18 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 19 C 0.04 1.08 5.41 -17.43 -0.09 0.99 16 20 N -0.90 -26.93 13.97 55.49 0.78 -26.16 16 21 Si 0.88 22.69 24.89 -169.99 -4.23 18.46 16 22 H -0.28 -7.25 6.83 56.52 0.39 -6.87 16 23 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 24 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.10 1.93 6.96 -2.53 -0.02 1.91 16 26 C 0.08 1.29 3.96 -24.42 -0.10 1.19 16 27 H 0.07 1.07 6.14 -51.93 -0.32 0.76 16 28 O -0.56 -8.49 13.48 -35.23 -0.47 -8.96 16 29 H 0.06 0.86 7.99 -51.92 -0.41 0.44 16 30 H 0.08 0.89 5.72 -51.93 -0.30 0.59 16 31 H 0.08 1.06 6.11 -51.93 -0.32 0.74 16 32 H 0.20 2.26 8.06 -52.48 -0.42 1.84 16 33 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.80 7.87 -51.93 -0.41 0.39 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.07 7.00 -51.93 -0.36 0.71 16 39 H 0.04 0.85 3.72 -51.93 -0.19 0.66 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.38 3.84 9.11 45.56 0.42 4.25 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -34.43 352.41 -6.29 -40.71 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.79 Total: 2.62 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -1.87 Total: 11.47 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.35 Total: -57.36 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.36 Total: -21.21 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.23 Total: 18.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.43 -6.29 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047413109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.654 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds