Wall clock time and date at job start Tue Mar 31 2020 13:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34788 * 120.00166 * 2 1 4 4 O 1.21684 * 120.00109 * 185.35307 * 3 2 1 5 5 C 1.46719 * 119.99682 * 5.35667 * 3 2 1 6 6 C 1.36340 * 126.64585 * 184.20598 * 5 3 2 7 7 N 1.33692 * 107.45512 * 179.83807 * 6 5 3 8 8 C 1.30608 * 108.99388 * 0.43286 * 7 6 5 9 9 C 1.50700 * 125.42161 * 179.71029 * 8 7 6 10 10 C 1.53002 * 117.50063 * 8.76703 * 9 8 7 11 11 C 1.53001 * 117.49706 * 300.10817 * 9 8 7 12 12 O 1.33665 * 109.15640 * 359.72938 * 8 7 6 13 13 C 1.46500 * 120.00293 * 180.02562 * 2 1 3 14 14 H 1.08995 * 110.64395 * 178.30734 * 13 2 1 15 15 C 1.54322 * 110.71934 * 301.45403 * 13 2 1 16 16 N 1.47019 * 107.26944 * 140.73102 * 15 13 2 17 17 C 1.36941 * 125.64627 * 181.07724 * 16 15 13 18 18 H 1.08006 * 119.99727 * 148.10853 * 17 16 15 19 19 C 1.38809 * 120.00187 * 328.10699 * 17 16 15 20 20 N 1.31618 * 119.99920 * 156.60284 * 19 17 16 21 21 Si 1.86801 * 119.99938 * 336.60495 * 19 17 16 22 22 H 1.48496 * 109.47209 * 89.61191 * 21 19 17 23 23 H 1.48503 * 109.46844 * 209.61173 * 21 19 17 24 24 H 1.48501 * 109.47121 * 329.61200 * 21 19 17 25 25 C 1.47423 * 108.70880 * 1.05866 * 16 15 13 26 26 C 1.54913 * 104.92302 * 335.81682 * 25 16 15 27 27 H 1.08997 * 111.00353 * 278.98563 * 26 25 16 28 28 O 1.42907 * 111.00315 * 155.13791 * 26 25 16 29 29 H 1.09008 * 109.46643 * 272.61333 * 1 2 3 30 30 H 1.08999 * 109.47474 * 32.60943 * 1 2 3 31 31 H 1.08997 * 109.46925 * 152.61399 * 1 2 3 32 32 H 1.08009 * 126.26877 * 359.97438 * 6 5 3 33 33 H 1.09006 * 115.55071 * 154.43658 * 9 8 7 34 34 H 1.08998 * 117.49314 * 0.02562 * 10 9 8 35 35 H 1.09004 * 117.49990 * 145.01987 * 10 9 8 36 36 H 1.09003 * 117.49549 * 214.98011 * 11 9 8 37 37 H 1.08997 * 117.50094 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.88005 * 21.31253 * 15 13 2 39 39 H 1.09005 * 110.01033 * 260.21929 * 15 13 2 40 40 H 0.97006 * 120.00095 * 180.02562 * 20 19 17 41 41 H 1.08996 * 110.36621 * 94.70452 * 25 16 15 42 42 H 1.08994 * 110.37186 * 216.92741 * 25 16 15 43 43 H 0.96698 * 113.99789 * 61.45170 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1696 -0.0983 5 6 1.4101 2.4351 0.1186 6 6 1.9421 3.6887 0.0536 7 7 0.9383 4.5587 0.2047 8 6 -0.1763 3.8976 0.3675 9 6 -1.5352 4.5146 0.5766 10 6 -1.6588 6.0290 0.3973 11 6 -1.7212 5.4163 1.7986 12 8 0.0803 2.5867 0.3197 13 6 2.1975 -1.2687 -0.0006 14 1 3.2726 -1.0916 -0.0306 15 6 1.8183 -2.1187 1.2304 16 7 1.7366 -3.5178 0.7863 17 6 1.4049 -4.5873 1.5746 18 1 0.8812 -5.4303 1.1485 19 6 1.7418 -4.5879 2.9212 20 7 1.0664 -5.3355 3.7681 21 14 3.1535 -3.5277 3.5313 22 1 2.6388 -2.1865 3.9073 23 1 3.7775 -4.1686 4.7167 24 1 4.1666 -3.3851 2.4549 25 6 2.0706 -3.5788 -0.6484 26 6 1.7543 -2.1632 -1.1921 27 1 0.6885 -2.0500 -1.3906 28 8 2.5240 -1.8802 -2.3625 29 1 -0.3633 0.0469 1.0267 30 1 -0.3634 0.8656 -0.5538 31 1 -0.3633 -0.9125 -0.4727 32 1 2.9834 3.9340 -0.0951 33 1 -2.3824 3.9007 0.2705 34 1 -0.7571 6.5790 0.1276 35 1 -2.5873 6.4116 -0.0266 36 1 -2.6908 5.3960 2.2962 37 1 -0.8608 5.5630 2.4515 38 1 0.8526 -1.7965 1.6201 39 1 2.5815 -2.0187 2.0022 40 1 1.3015 -5.3357 4.7093 41 1 3.1275 -3.8092 -0.7823 42 1 1.4539 -4.3244 -1.1501 43 1 2.3511 -2.4797 -3.1013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047413109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:44 Heat of formation + Delta-G solvation = -9.133459 kcal Electronic energy + Delta-G solvation = -27622.067852 eV Core-core repulsion = 23670.755680 eV Total energy + Delta-G solvation = -3951.312172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.64585 -41.41734 -39.62620 -38.25632 -36.95266 -36.71103 -35.79978 -34.19321 -31.94707 -30.62596 -29.45972 -28.14091 -26.58540 -25.67644 -24.52130 -23.29360 -22.66586 -22.27511 -21.80054 -20.92528 -19.36288 -19.04632 -18.52487 -18.14544 -17.90437 -17.76765 -17.02981 -16.40066 -15.99339 -15.93077 -15.68638 -15.50979 -15.27268 -14.81697 -14.67720 -14.45572 -14.34520 -13.89512 -13.73274 -13.51287 -13.40948 -13.27499 -12.90352 -12.75358 -12.69349 -12.42630 -12.35982 -12.04361 -11.97654 -11.86252 -11.68022 -11.60131 -11.48323 -11.10500 -10.74817 -10.16761 -9.81720 -9.03154 -8.31922 -5.65643 -0.42777 1.04025 1.14397 1.20485 1.30773 1.40272 1.66521 1.79895 2.30844 2.69112 2.78877 2.88523 3.00642 3.28372 3.37060 3.54180 3.67391 3.75855 3.80088 3.89014 3.94650 3.97735 4.05878 4.18200 4.29736 4.31741 4.44437 4.47414 4.60049 4.72346 4.78712 4.79286 4.84876 4.90059 5.00246 5.02665 5.13984 5.19686 5.25776 5.67324 5.94079 6.04066 6.37300 6.62301 6.66323 6.83024 7.40012 8.00138 8.87715 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.003571 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.919071 B = 7838.797902 C = 8521.640577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.591 5.591 3 C 0.605 3.395 4 O -0.550 6.550 5 C -0.125 4.125 6 C 0.062 3.938 7 N -0.505 5.505 8 C 0.255 3.745 9 C -0.106 4.106 10 C -0.134 4.134 11 C -0.146 4.146 12 O -0.178 6.178 13 C 0.142 3.858 14 H 0.095 0.905 15 C 0.120 3.880 16 N -0.615 5.615 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.009 4.009 20 N -0.936 5.936 21 Si 0.925 3.075 22 H -0.282 1.282 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.098 3.902 26 C 0.101 3.899 27 H 0.097 0.903 28 O -0.565 6.565 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.208 0.792 33 H 0.162 0.838 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 21.439 -10.665 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.321 5.321 3 C 0.394 3.606 4 O -0.430 6.430 5 C -0.180 4.180 6 C -0.082 4.082 7 N -0.234 5.234 8 C 0.051 3.949 9 C -0.125 4.125 10 C -0.171 4.171 11 C -0.184 4.184 12 O -0.066 6.066 13 C 0.037 3.963 14 H 0.113 0.887 15 C -0.006 4.006 16 N -0.344 5.344 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.755 3.245 22 H -0.209 1.209 23 H -0.226 1.226 24 H -0.202 1.202 25 C -0.027 4.027 26 C 0.041 3.959 27 H 0.115 0.885 28 O -0.373 6.373 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.225 0.775 33 H 0.179 0.821 34 H 0.115 0.885 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.040 22.357 -10.157 25.838 hybrid contribution 0.997 -1.340 0.572 1.765 sum -7.043 21.017 -9.585 24.149 Atomic orbital electron populations 1.22161 0.76630 1.04743 1.03410 1.47637 1.08703 1.04415 1.71321 1.16678 0.85789 0.81606 0.76541 1.90857 1.13522 1.86294 1.52321 1.22669 0.81512 0.96940 1.16894 1.23844 1.01041 0.86524 0.96768 1.70423 0.98207 1.34262 1.20505 1.26375 0.97512 0.76953 0.94091 1.20624 0.87347 0.95318 1.09180 1.23229 1.05376 0.89689 0.98764 1.23264 1.05035 0.99307 0.90761 1.84623 1.24401 1.29091 1.68447 1.21924 0.97581 0.82244 0.94522 0.88731 1.21819 0.98996 0.85203 0.94585 1.44528 1.81299 1.01376 1.07157 1.18506 1.29971 0.97679 0.90629 0.91311 1.25737 0.99452 0.98742 0.96702 1.69924 1.40244 1.44543 1.03293 0.86169 0.82814 0.78351 0.77137 1.20899 1.22554 1.20205 1.22527 0.98895 0.96445 0.84835 1.23160 0.95510 0.92560 0.84713 0.88543 1.86491 1.67127 1.59609 1.24107 0.91679 0.88726 0.88772 0.77542 0.82056 0.88479 0.84491 0.84622 0.89414 0.93123 0.97202 0.92426 0.94911 0.90774 0.74829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 8.30 127.77 1.06 2.82 16 2 N -0.59 -18.96 2.89 -820.05 -2.37 -21.32 16 3 C 0.61 20.48 7.64 86.46 0.66 21.14 16 4 O -0.55 -21.96 16.28 -4.30 -0.07 -22.03 16 5 C -0.13 -3.53 6.74 24.04 0.16 -3.37 16 6 C 0.06 1.58 11.66 83.97 0.98 2.56 16 7 N -0.51 -12.07 10.79 -302.88 -3.27 -15.34 16 8 C 0.25 5.29 7.86 88.29 0.69 5.98 16 9 C -0.11 -1.27 6.33 -11.54 -0.07 -1.34 16 10 C -0.13 -1.17 10.13 30.62 0.31 -0.86 16 11 C -0.15 -1.36 10.24 30.62 0.31 -1.05 16 12 O -0.18 -4.24 7.65 -7.09 -0.05 -4.30 16 13 C 0.14 5.22 3.10 46.28 0.14 5.36 16 14 H 0.09 3.95 7.00 -2.39 -0.02 3.94 16 15 C 0.12 5.20 5.68 86.73 0.49 5.70 16 16 N -0.62 -28.71 2.99 -692.00 -2.07 -30.78 16 17 C -0.24 -13.26 10.47 84.03 0.88 -12.38 16 18 H 0.07 4.04 8.06 -2.91 -0.02 4.01 16 19 C -0.01 -0.50 5.41 84.86 0.46 -0.04 16 20 N -0.94 -57.22 13.97 21.65 0.30 -56.92 16 21 Si 0.93 47.83 24.89 68.60 1.71 49.53 16 22 H -0.28 -14.25 6.83 99.48 0.68 -13.57 16 23 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 24 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 25 C 0.10 3.60 6.96 86.86 0.60 4.20 16 26 C 0.10 3.11 3.96 32.09 0.13 3.24 16 27 H 0.10 2.54 6.14 -2.39 -0.01 2.53 16 28 O -0.57 -15.68 13.48 -148.98 -2.01 -17.69 16 29 H 0.06 1.60 7.99 -2.38 -0.02 1.58 16 30 H 0.09 1.98 5.72 -2.39 -0.01 1.96 16 31 H 0.09 2.10 6.11 -2.39 -0.01 2.09 16 32 H 0.21 4.68 8.06 -2.91 -0.02 4.65 16 33 H 0.16 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.10 1.19 7.87 -2.39 -0.02 1.17 16 35 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 2.17 7.00 -2.39 -0.02 2.16 16 39 H 0.01 0.50 3.72 -2.38 -0.01 0.50 16 40 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.40 6.79 9.11 -74.06 -0.67 6.11 16 Total: -1.00 -75.60 352.41 -0.65 -76.25 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.36 Total: 10.62 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 6.81 Total: 31.98 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -7.40 Total: -124.36 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -2.13 Total: -44.02 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.71 Total: 49.53 kcal Total: -75.60 -0.65 -76.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047413109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.120 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds