Wall clock time and date at job start Tue Mar 31 2020 13:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.99874 * 2 1 4 4 O 1.21492 * 119.99742 * 175.85795 * 3 2 1 5 5 C 1.48329 * 119.99925 * 355.85690 * 3 2 1 6 6 C 1.42264 * 126.93852 * 185.81413 * 5 3 2 7 7 C 1.35319 * 103.92351 * 179.97438 * 6 5 3 8 8 C 1.50697 * 126.66759 * 179.97438 * 7 6 5 9 9 C 1.52995 * 117.50100 * 188.75236 * 8 7 6 10 10 C 1.52997 * 117.49772 * 120.08965 * 8 7 6 11 11 O 1.34008 * 106.66639 * 0.02562 * 7 6 5 12 12 N 1.20902 * 111.84779 * 359.70404 * 11 7 6 13 13 C 1.46494 * 120.00343 * 180.02562 * 2 1 3 14 14 H 1.09005 * 110.64402 * 178.31106 * 13 2 1 15 15 C 1.54326 * 110.72101 * 301.45130 * 13 2 1 16 16 N 1.47016 * 107.27306 * 140.73298 * 15 13 2 17 17 C 1.36938 * 125.64508 * 181.08352 * 16 15 13 18 18 H 1.08001 * 120.00722 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99647 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00277 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47225 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47208 * 119.99944 * 21 19 17 24 24 H 1.48504 * 109.47291 * 240.00012 * 21 19 17 25 25 C 1.47417 * 108.70647 * 1.06136 * 16 15 13 26 26 C 1.54915 * 104.92805 * 335.81690 * 25 16 15 27 27 H 1.09001 * 111.00508 * 278.99349 * 26 25 16 28 28 O 1.42898 * 111.00602 * 155.13750 * 26 25 16 29 29 H 1.08997 * 109.46728 * 275.66454 * 1 2 3 30 30 H 1.08999 * 109.47256 * 35.66736 * 1 2 3 31 31 H 1.09001 * 109.46836 * 155.66405 * 1 2 3 32 32 H 1.08003 * 128.04115 * 0.02562 * 6 5 3 33 33 H 1.08996 * 115.55052 * 334.42300 * 8 7 6 34 34 H 1.09000 * 117.49864 * 0.02562 * 9 8 7 35 35 H 1.09002 * 117.50281 * 145.02347 * 9 8 7 36 36 H 1.09002 * 117.50359 * 214.98022 * 10 8 7 37 37 H 1.09002 * 117.49873 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.87976 * 21.31430 * 15 13 2 39 39 H 1.09002 * 110.00906 * 260.22865 * 15 13 2 40 40 H 0.96999 * 120.00355 * 180.02562 * 20 19 17 41 41 H 1.09006 * 110.37074 * 94.70847 * 25 16 15 42 42 H 1.09004 * 110.37216 * 216.92557 * 25 16 15 43 43 H 0.96694 * 113.99883 * 61.45217 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3514 1.1686 0.0760 5 6 1.4001 2.4501 -0.0928 6 6 1.9599 3.7518 -0.2203 7 6 0.8809 4.5673 -0.2644 8 6 0.8924 6.0686 -0.3950 9 6 -0.4380 6.8032 -0.2185 10 6 0.1886 6.6774 -1.6095 11 8 -0.1997 3.7807 -0.1682 12 7 0.1004 2.6129 -0.0793 13 6 2.1975 -1.2686 -0.0006 14 1 3.2727 -1.0916 -0.0306 15 6 1.8184 -2.1187 1.2304 16 7 1.7368 -3.5178 0.7864 17 6 1.4050 -4.5872 1.5748 18 1 1.1759 -4.4375 2.6196 19 6 1.3642 -5.8639 1.0314 20 7 1.6438 -6.0465 -0.2417 21 14 0.9123 -7.3228 2.1069 22 1 0.6452 -6.8539 3.4904 23 1 -0.3030 -7.9809 1.5635 24 1 2.0361 -8.2935 2.1221 25 6 2.0707 -3.5788 -0.6481 26 6 1.7544 -2.1632 -1.1921 27 1 0.6886 -2.0500 -1.3905 28 8 2.5241 -1.8804 -2.3624 29 1 -0.3633 0.1014 1.0226 30 1 -0.3634 0.8349 -0.5992 31 1 -0.3633 -0.9364 -0.4235 32 1 3.0034 4.0255 -0.2711 33 1 1.7931 6.5650 -0.0342 34 1 -1.3215 6.2007 -0.0075 35 1 -0.4125 7.7832 0.2581 36 1 0.6260 7.5746 -2.0474 37 1 -0.2824 5.9920 -2.3142 38 1 0.8527 -1.7965 1.6201 39 1 2.5815 -2.0185 2.0023 40 1 1.6149 -6.9385 -0.6215 41 1 3.1277 -3.8093 -0.7822 42 1 1.4540 -4.3245 -1.1499 43 1 2.3513 -2.4799 -3.1011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047476421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:42 Heat of formation + Delta-G solvation = 58.899757 kcal Electronic energy + Delta-G solvation = -27229.940265 eV Core-core repulsion = 23281.578235 eV Total energy + Delta-G solvation = -3948.362030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.25860 -39.91803 -37.86396 -37.81050 -35.28376 -34.87256 -34.08194 -32.09503 -31.52403 -28.70248 -27.40484 -26.78090 -25.22411 -24.33712 -23.75032 -22.86398 -22.41307 -20.52723 -20.06476 -18.88615 -17.97163 -17.62390 -17.31513 -17.10242 -16.54222 -16.03050 -15.73409 -15.09781 -14.85699 -14.73223 -13.99649 -13.85022 -13.72394 -13.27481 -13.07327 -12.86749 -12.79197 -12.62535 -12.17595 -12.06263 -11.79623 -11.65905 -11.52743 -11.30198 -11.24565 -11.01984 -10.94719 -10.87393 -10.56662 -10.19148 -10.10047 -9.97764 -9.72980 -9.45766 -9.31864 -8.75788 -8.43053 -6.96637 -5.75444 -3.18679 0.95220 1.46723 2.60321 2.88864 3.17350 3.34646 3.35254 3.41121 3.43517 3.81989 3.95404 4.27845 4.38958 4.41922 4.57356 4.65454 4.86353 4.99865 5.11380 5.15928 5.27843 5.32527 5.36040 5.39066 5.50305 5.52998 5.60793 5.64163 5.66769 5.74204 5.85766 6.01585 6.08403 6.11754 6.45523 6.56356 6.83166 7.29417 7.40421 7.50852 7.68370 7.82426 8.11754 8.14728 8.23833 9.09867 9.70235 10.32425 11.28619 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030035 B = 0.002629 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.017436 B =10649.086816 C =10971.149480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.582 5.582 3 C 0.594 3.406 4 O -0.523 6.523 5 C -0.012 4.012 6 C -0.175 4.175 7 C -0.005 4.005 8 C -0.086 4.086 9 C -0.166 4.166 10 C -0.162 4.162 11 O 0.113 5.887 12 N -0.325 5.325 13 C 0.136 3.864 14 H 0.114 0.886 15 C 0.131 3.869 16 N -0.599 5.599 17 C -0.223 4.223 18 H 0.081 0.919 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.918 3.082 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.128 3.872 26 C 0.063 3.937 27 H 0.063 0.937 28 O -0.564 6.564 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.113 0.887 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 24.236 -3.458 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.314 5.314 3 C 0.380 3.620 4 O -0.398 6.398 5 C -0.171 4.171 6 C -0.197 4.197 7 C -0.068 4.068 8 C -0.105 4.105 9 C -0.203 4.203 10 C -0.199 4.199 11 O 0.041 5.959 12 N -0.029 5.029 13 C 0.033 3.967 14 H 0.132 0.868 15 C 0.005 3.995 16 N -0.326 5.326 17 C -0.351 4.351 18 H 0.099 0.901 19 C -0.206 4.206 20 N -0.572 5.572 21 Si 0.749 3.251 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.002 3.998 26 C 0.003 3.997 27 H 0.080 0.920 28 O -0.369 6.369 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.198 0.802 33 H 0.158 0.842 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.131 0.869 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.888 23.569 -2.934 24.249 hybrid contribution 0.320 -0.977 0.203 1.048 sum -4.568 22.592 -2.731 23.211 Atomic orbital electron populations 1.22136 0.78730 1.03944 1.02626 1.47647 1.07583 1.05340 1.70792 1.16916 0.86213 0.81445 0.77470 1.90785 1.12604 1.86270 1.50161 1.23525 0.89956 0.96855 1.06737 1.22322 1.01465 0.89567 1.06371 1.23380 0.85597 0.94333 1.03482 1.20442 0.99565 0.84353 1.06166 1.23104 0.95469 1.02064 0.99660 1.23143 1.02707 1.02875 0.91193 1.84765 1.33454 1.11899 1.65812 1.74368 1.15767 0.96085 1.16661 1.22311 0.98083 0.80944 0.95399 0.86808 1.21534 0.98661 0.85816 0.93537 1.44274 1.81211 1.00782 1.06368 1.19142 1.38963 0.84718 0.92267 0.90092 1.24814 1.01753 0.97494 0.96519 1.69743 1.55374 1.20899 1.11151 0.85942 0.77680 0.82315 0.79210 1.20434 1.21646 1.21633 1.22591 0.99998 0.91868 0.85311 1.23820 0.93629 0.97632 0.84638 0.91973 1.86419 1.67438 1.58856 1.24205 0.92170 0.89496 0.90156 0.80188 0.84206 0.87668 0.87516 0.87415 0.88053 0.94870 0.94814 0.93587 0.95594 0.86903 0.77665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 8.45 59.85 0.51 1.54 16 2 N -0.58 -10.37 2.89 -172.59 -0.50 -10.87 16 3 C 0.59 10.70 7.70 -12.10 -0.09 10.60 16 4 O -0.52 -10.79 16.34 5.37 0.09 -10.70 16 5 C -0.01 -0.18 6.88 -82.53 -0.57 -0.74 16 6 C -0.17 -2.05 10.93 -39.08 -0.43 -2.48 16 7 C -0.01 -0.05 6.93 -35.35 -0.24 -0.29 16 8 C -0.09 -0.52 6.26 -91.78 -0.57 -1.09 16 9 C -0.17 -0.79 10.18 -26.70 -0.27 -1.06 16 10 C -0.16 -0.78 10.24 -26.69 -0.27 -1.05 16 11 O 0.11 1.28 10.96 17.27 0.19 1.47 16 12 N -0.33 -4.40 8.68 33.29 0.29 -4.11 16 13 C 0.14 2.74 3.09 -65.94 -0.20 2.54 16 14 H 0.11 2.52 7.00 -51.93 -0.36 2.16 16 15 C 0.13 2.87 6.88 -3.07 -0.02 2.85 16 16 N -0.60 -15.32 3.39 -170.07 -0.58 -15.89 16 17 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.32 10.09 55.49 0.56 -25.76 16 21 Si 0.92 21.80 29.55 -169.99 -5.02 16.77 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.13 3.09 5.61 -2.53 -0.01 3.08 16 26 C 0.06 1.27 3.95 -24.42 -0.10 1.18 16 27 H 0.06 1.19 6.17 -51.93 -0.32 0.87 16 28 O -0.56 -10.64 13.48 -35.23 -0.47 -11.11 16 29 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.09 1.23 5.30 -51.93 -0.27 0.96 16 31 H 0.08 1.23 6.15 -51.93 -0.32 0.91 16 32 H 0.18 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.56 8.01 -51.93 -0.42 0.14 16 35 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.03 0.70 7.07 -51.93 -0.37 0.33 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16 43 H 0.38 5.50 9.11 45.56 0.42 5.91 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -33.09 355.39 -7.50 -40.59 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.88 Total: 5.86 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.53 Total: 8.39 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.23 Total: -56.64 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.20 Total: -20.34 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.09 -7.50 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047476421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.493 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds