Wall clock time and date at job start Tue Mar 31 2020 13:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34784 * 119.99911 * 2 1 4 4 O 1.21607 * 119.99824 * 186.05151 * 3 2 1 5 5 C 1.47399 * 119.99954 * 6.04866 * 3 2 1 6 6 C 1.47101 * 128.56648 * 7.12162 * 5 3 2 7 7 N 1.30008 * 105.32811 * 179.86631 * 6 5 3 8 8 O 1.20650 * 112.30331 * 0.42513 * 7 6 5 9 9 C 1.33495 * 113.15719 * 359.71046 * 8 7 6 10 10 C 1.50697 * 126.82781 * 179.97438 * 9 8 7 11 11 C 1.52999 * 117.50351 * 8.64667 * 10 9 8 12 12 C 1.52993 * 60.00224 * 252.50909 * 11 10 9 13 13 C 1.46499 * 120.00266 * 180.02562 * 2 1 3 14 14 H 1.09000 * 110.88799 * 183.88343 * 13 2 1 15 15 C 1.54915 * 111.00313 * 307.80465 * 13 2 1 16 16 N 1.47739 * 104.83977 * 155.16816 * 15 13 2 17 17 C 1.36941 * 125.82215 * 155.83142 * 16 15 13 18 18 H 1.08002 * 119.99857 * 359.92751 * 17 16 15 19 19 C 1.38814 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00047 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47008 * 89.99570 * 21 19 17 23 23 H 1.48494 * 109.47270 * 209.99668 * 21 19 17 24 24 H 1.48499 * 109.47199 * 329.99707 * 21 19 17 25 25 C 1.47027 * 108.53365 * 335.74758 * 16 15 13 26 26 C 1.54325 * 107.39866 * 1.18712 * 25 16 15 27 27 H 1.09003 * 110.71801 * 263.57823 * 26 25 16 28 28 O 1.42898 * 110.72506 * 140.47740 * 26 25 16 29 29 H 1.09001 * 109.47402 * 275.81071 * 1 2 3 30 30 H 1.09002 * 109.47115 * 35.80983 * 1 2 3 31 31 H 1.08999 * 109.47033 * 155.80795 * 1 2 3 32 32 H 1.08003 * 127.33375 * 359.97438 * 6 5 3 33 33 H 1.09006 * 115.54801 * 154.35596 * 10 9 8 34 34 H 1.09003 * 117.49707 * 0.02562 * 11 10 9 35 35 H 1.09002 * 117.49936 * 145.01477 * 11 10 9 36 36 H 1.08999 * 117.49843 * 252.50817 * 12 11 10 37 37 H 1.08999 * 117.49723 * 107.48862 * 12 11 10 38 38 H 1.09002 * 110.36150 * 273.91963 * 15 13 2 39 39 H 1.09002 * 110.36425 * 36.13352 * 15 13 2 40 40 H 0.97003 * 119.99676 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.88406 * 241.68721 * 25 16 15 42 42 H 1.09002 * 109.88156 * 120.67275 * 25 16 15 43 43 H 0.96702 * 113.99689 * 61.44564 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3498 1.1702 -0.1110 5 6 1.4080 2.4402 0.1345 6 6 -0.0194 2.6524 0.4201 7 7 -0.1774 3.9427 0.4420 8 8 0.8512 4.5337 0.2219 9 6 1.8904 3.7210 0.0182 10 6 3.3103 4.1278 -0.2807 11 6 3.6591 5.6130 -0.1645 12 6 3.5570 4.9568 -1.5428 13 6 2.1975 -1.2687 -0.0006 14 1 3.2717 -1.0972 0.0685 15 6 1.7074 -2.1933 1.1417 16 7 2.0290 -3.5612 0.6855 17 6 2.2212 -4.6508 1.4925 18 1 2.1419 -4.5492 2.5648 19 6 2.5190 -5.8855 0.9324 20 7 2.6161 -6.0091 -0.3744 21 14 2.7820 -7.3715 2.0332 22 1 1.4852 -8.0615 2.2515 23 1 3.7365 -8.3056 1.3842 24 1 3.3331 -6.9288 3.3391 25 6 2.1064 -3.5582 -0.7827 26 6 1.8484 -2.1119 -1.2554 27 1 0.8033 -1.9781 -1.5346 28 8 2.7083 -1.7753 -2.3459 29 1 -0.3634 0.1040 1.0224 30 1 -0.3633 0.8334 -0.6013 31 1 -0.3633 -0.9374 -0.4211 32 1 -0.7748 1.8972 0.5796 33 1 4.0761 3.4067 0.0055 34 1 2.8616 6.2958 0.1286 35 1 4.6545 5.8693 0.1984 36 1 4.4851 4.7814 -2.0867 37 1 2.6922 5.2079 -2.1569 38 1 2.2391 -1.9684 2.0663 39 1 0.6328 -2.0812 1.2859 40 1 2.8238 -6.8720 -0.7658 41 1 1.3483 -4.2239 -1.1953 42 1 3.0970 -3.8814 -1.1024 43 1 2.5830 -2.3270 -3.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047582918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:51 Heat of formation + Delta-G solvation = 58.340606 kcal Electronic energy + Delta-G solvation = -27650.838247 eV Core-core repulsion = 23702.451970 eV Total energy + Delta-G solvation = -3948.386277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.10843 -39.92709 -37.97171 -37.51638 -35.35311 -34.89472 -33.80466 -31.94961 -31.65167 -28.73704 -27.52140 -27.03380 -25.12935 -24.27019 -23.91320 -22.71164 -21.66546 -20.48357 -20.25130 -19.03026 -17.90145 -17.82478 -17.14222 -17.05997 -16.62554 -15.93471 -15.72092 -15.11298 -14.78333 -14.56854 -14.14029 -14.00765 -13.90579 -13.13537 -13.06597 -12.76106 -12.58936 -12.33466 -12.23452 -11.94834 -11.86314 -11.71457 -11.45939 -11.40896 -11.27028 -10.92730 -10.82040 -10.76728 -10.54237 -10.19142 -10.01389 -9.91768 -9.84992 -9.39561 -9.31884 -8.75686 -8.43246 -6.97306 -5.80727 -3.16180 0.87306 1.61581 2.53034 2.99433 3.16646 3.35826 3.41251 3.43195 3.53225 3.99000 4.06306 4.32636 4.41049 4.48399 4.58950 4.62593 4.75092 4.99763 5.05562 5.16151 5.26351 5.31034 5.34388 5.42808 5.50345 5.54480 5.55611 5.59963 5.69797 5.76270 5.82346 5.85036 5.99769 6.05876 6.41886 6.52330 6.80258 7.30275 7.41404 7.46335 7.68990 7.95566 8.11442 8.17367 8.21840 9.09475 9.69451 10.32514 11.30607 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.002971 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.317108 B = 9421.093544 C = 9708.807236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.591 5.591 3 C 0.598 3.402 4 O -0.527 6.527 5 C -0.249 4.249 6 C 0.012 3.988 7 N -0.357 5.357 8 O 0.090 5.910 9 C 0.077 3.923 10 C -0.090 4.090 11 C -0.167 4.167 12 C -0.156 4.156 13 C 0.136 3.864 14 H 0.117 0.883 15 C 0.131 3.869 16 N -0.599 5.599 17 C -0.231 4.231 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.151 3.849 26 C 0.065 3.935 27 H 0.055 0.945 28 O -0.560 6.560 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.212 0.788 33 H 0.155 0.845 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.254 0.746 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 19.801 -2.415 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.322 5.322 3 C 0.386 3.614 4 O -0.404 6.404 5 C -0.256 4.256 6 C -0.170 4.170 7 N -0.063 5.063 8 O 0.030 5.970 9 C 0.013 3.987 10 C -0.109 4.109 11 C -0.204 4.204 12 C -0.193 4.193 13 C 0.032 3.968 14 H 0.135 0.865 15 C 0.004 3.996 16 N -0.326 5.326 17 C -0.359 4.359 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.746 3.254 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.026 3.974 26 C 0.005 3.995 27 H 0.073 0.927 28 O -0.364 6.364 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.228 0.772 33 H 0.173 0.827 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.059 20.835 -1.864 21.309 hybrid contribution 0.021 -2.162 0.065 2.163 sum -4.037 18.674 -1.799 19.190 Atomic orbital electron populations 1.22258 0.80281 1.03836 1.01645 1.47450 1.06651 1.05602 1.72546 1.16739 0.86239 0.81755 0.76670 1.90779 1.13221 1.86580 1.49841 1.22039 0.93947 0.94655 1.14990 1.27073 0.95791 0.93261 1.00826 1.73677 1.05137 1.09045 1.18433 1.84523 1.11944 1.35120 1.65408 1.23733 0.90961 0.88467 0.95571 1.20781 0.88208 0.96682 1.05244 1.23118 1.03973 0.93139 1.00133 1.23095 1.04238 1.01413 0.90529 1.22451 0.98452 0.80774 0.95097 0.86525 1.21832 0.97480 0.85520 0.94750 1.44298 1.83327 1.03190 1.01832 1.19066 1.41671 0.85737 0.89438 0.90110 1.24825 1.01537 0.97786 0.96087 1.69932 1.54679 1.23651 1.08643 0.86062 0.77590 0.82405 0.79356 1.21527 1.21578 1.20567 1.21867 1.02001 0.89110 0.84433 1.23563 0.92068 0.97264 0.86632 0.92693 1.86506 1.63309 1.61254 1.25373 0.91930 0.90865 0.89864 0.77173 0.82722 0.87827 0.87350 0.87143 0.88243 0.93248 0.95529 0.93589 0.93402 0.92087 0.77937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 7.29 59.84 0.44 1.14 16 2 N -0.59 -9.13 2.91 -172.75 -0.50 -9.63 16 3 C 0.60 9.68 7.66 -12.53 -0.10 9.58 16 4 O -0.53 -10.07 14.72 5.27 0.08 -9.99 16 5 C -0.25 -3.32 6.17 -102.90 -0.63 -3.95 16 6 C 0.01 0.14 10.22 -14.73 -0.15 -0.01 16 7 N -0.36 -4.36 12.01 31.80 0.38 -3.98 16 8 O 0.09 1.06 10.86 18.65 0.20 1.26 16 9 C 0.08 0.93 7.00 -34.63 -0.24 0.69 16 10 C -0.09 -0.94 5.80 -91.77 -0.53 -1.47 16 11 C -0.17 -1.24 10.18 -26.73 -0.27 -1.51 16 12 C -0.16 -1.26 10.23 -26.73 -0.27 -1.54 16 13 C 0.14 2.55 3.15 -65.78 -0.21 2.35 16 14 H 0.12 2.53 7.05 -51.93 -0.37 2.17 16 15 C 0.13 2.64 6.81 -2.35 -0.02 2.63 16 16 N -0.60 -14.86 3.41 -169.81 -0.58 -15.43 16 17 C -0.23 -6.28 10.29 -15.06 -0.15 -6.44 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -26.32 10.31 55.49 0.57 -25.75 16 21 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.15 3.55 5.14 -3.06 -0.02 3.53 16 26 C 0.07 1.23 3.87 -24.89 -0.10 1.13 16 27 H 0.06 0.93 6.48 -51.93 -0.34 0.60 16 28 O -0.56 -10.34 13.39 -35.23 -0.47 -10.81 16 29 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 30 H 0.07 0.68 5.36 -51.93 -0.28 0.40 16 31 H 0.08 0.95 6.37 -51.93 -0.33 0.62 16 32 H 0.21 1.72 5.12 -52.48 -0.27 1.46 16 33 H 0.16 1.85 6.88 -51.93 -0.36 1.49 16 34 H 0.10 0.72 8.02 -51.93 -0.42 0.30 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.50 6.94 -51.93 -0.36 0.14 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 42 H 0.06 1.62 7.28 -51.93 -0.38 1.24 16 43 H 0.37 5.36 9.11 45.56 0.42 5.78 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -33.29 350.07 -7.11 -40.40 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.69 Total: 6.14 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.35 Total: 5.87 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.13 Total: -54.79 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.19 Total: -19.54 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.29 -7.11 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047582918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.737 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds