Wall clock time and date at job start Tue Mar 31 2020 13:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34784 * 119.99911 * 2 1 4 4 O 1.21607 * 119.99824 * 186.05151 * 3 2 1 5 5 C 1.47399 * 119.99954 * 6.04866 * 3 2 1 6 6 C 1.47101 * 128.56648 * 7.12162 * 5 3 2 7 7 N 1.30008 * 105.32811 * 179.86631 * 6 5 3 8 8 O 1.20650 * 112.30331 * 0.42513 * 7 6 5 9 9 C 1.33495 * 113.15719 * 359.71046 * 8 7 6 10 10 C 1.50697 * 126.82781 * 179.97438 * 9 8 7 11 11 C 1.52999 * 117.50351 * 8.64667 * 10 9 8 12 12 C 1.52993 * 60.00224 * 252.50909 * 11 10 9 13 13 C 1.46499 * 120.00266 * 180.02562 * 2 1 3 14 14 H 1.09000 * 110.88799 * 183.88343 * 13 2 1 15 15 C 1.54915 * 111.00313 * 307.80465 * 13 2 1 16 16 N 1.47739 * 104.83977 * 155.16816 * 15 13 2 17 17 C 1.36941 * 125.82215 * 155.83142 * 16 15 13 18 18 H 1.08002 * 119.99857 * 359.92751 * 17 16 15 19 19 C 1.38814 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00047 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47008 * 89.99570 * 21 19 17 23 23 H 1.48494 * 109.47270 * 209.99668 * 21 19 17 24 24 H 1.48499 * 109.47199 * 329.99707 * 21 19 17 25 25 C 1.47027 * 108.53365 * 335.74758 * 16 15 13 26 26 C 1.54325 * 107.39866 * 1.18712 * 25 16 15 27 27 H 1.09003 * 110.71801 * 263.57823 * 26 25 16 28 28 O 1.42898 * 110.72506 * 140.47740 * 26 25 16 29 29 H 1.09001 * 109.47402 * 275.81071 * 1 2 3 30 30 H 1.09002 * 109.47115 * 35.80983 * 1 2 3 31 31 H 1.08999 * 109.47033 * 155.80795 * 1 2 3 32 32 H 1.08003 * 127.33375 * 359.97438 * 6 5 3 33 33 H 1.09006 * 115.54801 * 154.35596 * 10 9 8 34 34 H 1.09003 * 117.49707 * 0.02562 * 11 10 9 35 35 H 1.09002 * 117.49936 * 145.01477 * 11 10 9 36 36 H 1.08999 * 117.49843 * 252.50817 * 12 11 10 37 37 H 1.08999 * 117.49723 * 107.48862 * 12 11 10 38 38 H 1.09002 * 110.36150 * 273.91963 * 15 13 2 39 39 H 1.09002 * 110.36425 * 36.13352 * 15 13 2 40 40 H 0.97003 * 119.99676 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.88406 * 241.68721 * 25 16 15 42 42 H 1.09002 * 109.88156 * 120.67275 * 25 16 15 43 43 H 0.96702 * 113.99689 * 61.44564 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3498 1.1702 -0.1110 5 6 1.4080 2.4402 0.1345 6 6 -0.0194 2.6524 0.4201 7 7 -0.1774 3.9427 0.4420 8 8 0.8512 4.5337 0.2219 9 6 1.8904 3.7210 0.0182 10 6 3.3103 4.1278 -0.2807 11 6 3.6591 5.6130 -0.1645 12 6 3.5570 4.9568 -1.5428 13 6 2.1975 -1.2687 -0.0006 14 1 3.2717 -1.0972 0.0685 15 6 1.7074 -2.1933 1.1417 16 7 2.0290 -3.5612 0.6855 17 6 2.2212 -4.6508 1.4925 18 1 2.1419 -4.5492 2.5648 19 6 2.5190 -5.8855 0.9324 20 7 2.6161 -6.0091 -0.3744 21 14 2.7820 -7.3715 2.0332 22 1 1.4852 -8.0615 2.2515 23 1 3.7365 -8.3056 1.3842 24 1 3.3331 -6.9288 3.3391 25 6 2.1064 -3.5582 -0.7827 26 6 1.8484 -2.1119 -1.2554 27 1 0.8033 -1.9781 -1.5346 28 8 2.7083 -1.7753 -2.3459 29 1 -0.3634 0.1040 1.0224 30 1 -0.3633 0.8334 -0.6013 31 1 -0.3633 -0.9374 -0.4211 32 1 -0.7748 1.8972 0.5796 33 1 4.0761 3.4067 0.0055 34 1 2.8616 6.2958 0.1286 35 1 4.6545 5.8693 0.1984 36 1 4.4851 4.7814 -2.0867 37 1 2.6922 5.2079 -2.1569 38 1 2.2391 -1.9684 2.0663 39 1 0.6328 -2.0812 1.2859 40 1 2.8238 -6.8720 -0.7658 41 1 1.3483 -4.2239 -1.1953 42 1 3.0970 -3.8814 -1.1024 43 1 2.5830 -2.3270 -3.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047582918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:51 Heat of formation + Delta-G solvation = 34.367599 kcal Electronic energy + Delta-G solvation = -27651.877794 eV Core-core repulsion = 23702.451970 eV Total energy + Delta-G solvation = -3949.425824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.01740 -41.25120 -39.42765 -38.31762 -36.74720 -36.46940 -34.89312 -33.70467 -32.64509 -30.45389 -29.10018 -28.20503 -26.71202 -25.36458 -25.07668 -23.33535 -22.69756 -22.30062 -21.54699 -20.19436 -19.03466 -19.01719 -18.79844 -18.17640 -17.77311 -17.47161 -16.64754 -16.44823 -16.32861 -15.81586 -15.65798 -15.30708 -14.83937 -14.56808 -14.51730 -14.27336 -14.04479 -13.71848 -13.39090 -13.15877 -12.99241 -12.92190 -12.74559 -12.64897 -12.62237 -12.45922 -12.19022 -12.08014 -11.88842 -11.63677 -11.51033 -11.41651 -11.17504 -10.91714 -10.77146 -10.31227 -9.73246 -8.96854 -7.88294 -5.25949 -0.09989 0.70819 1.46440 1.48767 1.52647 1.57601 1.86748 2.01868 2.47904 2.81642 3.10263 3.17496 3.19779 3.33583 3.38117 3.56642 3.69493 3.81570 3.87287 3.97654 4.02680 4.05474 4.17096 4.22787 4.40776 4.46168 4.52317 4.55348 4.70807 4.73385 4.78508 4.82628 4.94210 5.01631 5.09966 5.19298 5.36087 5.41918 5.44879 5.65589 6.12094 6.25588 6.83150 6.97305 7.03665 7.06485 7.68516 8.31392 9.21386 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.002971 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.317108 B = 9421.093544 C = 9708.807236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.589 5.589 3 C 0.596 3.404 4 O -0.568 6.568 5 C -0.275 4.275 6 C 0.031 3.969 7 N -0.370 5.370 8 O 0.089 5.911 9 C 0.089 3.911 10 C -0.122 4.122 11 C -0.144 4.144 12 C -0.148 4.148 13 C 0.149 3.851 14 H 0.081 0.919 15 C 0.134 3.866 16 N -0.621 5.621 17 C -0.245 4.245 18 H 0.087 0.913 19 C -0.062 4.062 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.282 1.282 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.163 3.837 26 C 0.083 3.917 27 H 0.086 0.914 28 O -0.571 6.571 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.134 0.866 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.248 0.752 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 21.558 -1.903 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.320 5.320 3 C 0.385 3.615 4 O -0.448 6.448 5 C -0.283 4.283 6 C -0.151 4.151 7 N -0.078 5.078 8 O 0.032 5.968 9 C 0.025 3.975 10 C -0.141 4.141 11 C -0.181 4.181 12 C -0.185 4.185 13 C 0.044 3.956 14 H 0.099 0.901 15 C 0.008 3.992 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.105 0.895 19 C -0.256 4.256 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.209 1.209 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.037 3.963 26 C 0.023 3.977 27 H 0.104 0.896 28 O -0.378 6.378 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.258 0.742 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.123 0.877 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.768 22.642 -1.348 23.404 hybrid contribution 0.571 -2.633 -0.103 2.697 sum -5.197 20.009 -1.451 20.724 Atomic orbital electron populations 1.22628 0.77356 1.05071 1.03916 1.47419 1.08290 1.04021 1.72257 1.17094 0.85930 0.82650 0.75795 1.90758 1.15117 1.87220 1.51727 1.21801 0.95171 0.93661 1.17648 1.27457 0.95132 0.93427 0.99053 1.73673 1.05292 1.09453 1.19365 1.84530 1.11821 1.34903 1.65535 1.24024 0.91508 0.88356 0.93608 1.20778 0.87017 0.98236 1.08077 1.23250 1.05095 0.90663 0.99060 1.23215 1.04835 0.99995 0.90468 1.21941 0.96983 0.82217 0.94492 0.90094 1.21946 0.98861 0.83508 0.94879 1.44558 1.83395 1.04546 1.02359 1.19459 1.40968 0.86727 0.90167 0.89541 1.25660 1.01963 1.00527 0.97412 1.70141 1.55771 1.23732 1.10141 0.85048 0.77343 0.78844 0.77893 1.20873 1.22256 1.19497 1.21601 0.98822 0.91744 0.84105 1.23357 0.93567 0.93976 0.86815 0.89642 1.86476 1.63657 1.61658 1.26045 0.89340 0.88491 0.89577 0.74221 0.84790 0.86914 0.85667 0.86232 0.87730 0.93703 0.92604 0.94238 0.95708 0.96325 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 7.29 127.77 0.93 1.91 16 2 N -0.59 -17.35 2.91 -818.72 -2.38 -19.73 16 3 C 0.60 18.98 7.66 86.65 0.66 19.64 16 4 O -0.57 -22.34 14.72 -4.05 -0.06 -22.40 16 5 C -0.28 -6.94 6.17 -18.75 -0.12 -7.06 16 6 C 0.03 0.61 10.22 87.29 0.89 1.50 16 7 N -0.37 -8.10 12.01 -54.21 -0.65 -8.75 16 8 O 0.09 1.93 10.86 76.98 0.84 2.76 16 9 C 0.09 2.06 7.00 25.48 0.18 2.24 16 10 C -0.12 -2.47 5.80 -11.54 -0.07 -2.54 16 11 C -0.14 -1.85 10.18 30.59 0.31 -1.54 16 12 C -0.15 -2.17 10.23 30.59 0.31 -1.86 16 13 C 0.15 5.57 3.15 46.39 0.15 5.72 16 14 H 0.08 3.65 7.05 -2.39 -0.02 3.63 16 15 C 0.13 5.31 6.81 86.80 0.59 5.90 16 16 N -0.62 -31.19 3.41 -691.14 -2.35 -33.54 16 17 C -0.24 -13.42 10.29 84.03 0.86 -12.56 16 18 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 19 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 20 N -0.95 -55.80 10.31 21.65 0.22 -55.58 16 21 Si 0.98 44.97 29.55 68.60 2.03 46.99 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.16 7.86 5.14 86.73 0.45 8.30 16 26 C 0.08 3.11 3.87 31.78 0.12 3.24 16 27 H 0.09 2.71 6.48 -2.39 -0.02 2.70 16 28 O -0.57 -21.08 13.39 -148.98 -2.00 -23.07 16 29 H 0.09 1.27 7.45 -2.39 -0.02 1.25 16 30 H 0.10 1.42 5.36 -2.39 -0.01 1.40 16 31 H 0.09 1.64 6.37 -2.39 -0.02 1.62 16 32 H 0.24 2.89 5.12 -2.91 -0.01 2.87 16 33 H 0.13 3.32 6.88 -2.38 -0.02 3.31 16 34 H 0.11 1.27 8.02 -2.39 -0.02 1.25 16 35 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.93 6.94 -2.39 -0.02 1.91 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.02 1.29 7.51 -2.39 -0.02 1.27 16 42 H 0.02 1.04 7.28 -2.39 -0.02 1.02 16 43 H 0.39 11.13 9.11 -74.06 -0.67 10.46 16 Total: -1.00 -74.72 350.07 1.78 -72.94 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.39 Total: 20.48 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 5.74 Total: 19.89 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -5.16 Total: -117.60 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.22 Total: -42.71 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -74.72 1.78 -72.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047582918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.305 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds