Wall clock time and date at job start Tue Mar 31 2020 13:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34766 * 120.00441 * 2 1 4 4 O 1.21618 * 120.00307 * 175.88807 * 3 2 1 5 5 C 1.47421 * 119.99839 * 355.89037 * 3 2 1 6 6 N 1.36062 * 126.45019 * 5.37537 * 5 3 2 7 7 C 1.29933 * 108.47840 * 179.82294 * 6 5 3 8 8 O 1.34052 * 109.24531 * 0.43903 * 7 6 5 9 9 C 1.34261 * 108.22286 * 359.72633 * 8 7 6 10 10 C 1.50703 * 126.52249 * 179.97438 * 9 8 7 11 11 C 1.52995 * 117.49946 * 8.64259 * 10 9 8 12 12 C 1.52999 * 117.49686 * 300.01994 * 10 9 8 13 13 C 1.46507 * 119.99696 * 179.97438 * 2 1 3 14 14 H 1.08997 * 110.88743 * 180.69772 * 13 2 1 15 15 C 1.54912 * 111.00560 * 304.58766 * 13 2 1 16 16 N 1.47428 * 104.83254 * 155.11987 * 15 13 2 17 17 C 1.36935 * 125.64590 * 155.83199 * 16 15 13 18 18 H 1.07997 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99748 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99761 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47208 * 89.99874 * 21 19 17 23 23 H 1.48501 * 109.46900 * 209.99892 * 21 19 17 24 24 H 1.48501 * 109.47278 * 329.99495 * 21 19 17 25 25 C 1.47022 * 108.69974 * 335.87205 * 16 15 13 26 26 C 1.54318 * 107.27542 * 1.05660 * 25 16 15 27 27 H 1.09002 * 110.72338 * 263.83478 * 26 25 16 28 28 O 1.42902 * 110.72291 * 140.55914 * 26 25 16 29 29 H 1.08996 * 109.47023 * 275.75098 * 1 2 3 30 30 H 1.09001 * 109.46762 * 35.74893 * 1 2 3 31 31 H 1.08997 * 109.47430 * 155.74600 * 1 2 3 32 32 H 1.08003 * 125.38226 * 180.16178 * 7 6 5 33 33 H 1.08996 * 115.54453 * 154.35076 * 10 9 8 34 34 H 1.09003 * 117.50092 * 0.02562 * 11 10 9 35 35 H 1.08998 * 117.49873 * 145.02339 * 11 10 9 36 36 H 1.09000 * 117.49535 * 214.97827 * 12 10 9 37 37 H 1.08997 * 117.49746 * 359.97438 * 12 10 9 38 38 H 1.08998 * 110.35916 * 273.95808 * 15 13 2 39 39 H 1.08999 * 110.36765 * 36.27939 * 15 13 2 40 40 H 0.96996 * 119.99980 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.88446 * 120.47668 * 25 16 15 42 42 H 1.09007 * 109.87990 * 241.64031 * 25 16 15 43 43 H 0.96706 * 113.99697 * 66.47267 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3528 1.1684 0.0755 5 6 1.4048 2.4422 -0.0915 6 7 0.0533 2.5995 -0.0784 7 6 -0.2146 3.8673 -0.1745 8 8 0.9323 4.5560 -0.2609 9 6 1.9511 3.6829 -0.2107 10 6 3.4199 4.0139 -0.2748 11 6 3.8150 5.4904 -0.2064 12 6 3.9289 4.7285 -1.5283 13 6 2.1975 -1.2688 0.0006 14 1 3.2737 -1.0963 0.0129 15 6 1.7642 -2.1596 1.1915 16 7 2.0624 -3.5376 0.7603 17 6 2.2935 -4.6013 1.5910 18 1 2.2647 -4.4663 2.6621 19 6 2.5649 -5.8533 1.0563 20 7 2.5995 -6.0179 -0.2491 21 14 2.8795 -7.3046 2.1894 22 1 1.5946 -7.9858 2.4897 23 1 3.8028 -8.2597 1.5257 24 1 3.4913 -6.8221 3.4536 25 6 2.0714 -3.5800 -0.7093 26 6 1.7892 -2.1482 -1.2108 27 1 0.7311 -2.0213 -1.4402 28 8 2.5951 -1.8438 -2.3510 29 1 -0.3633 0.1030 1.0225 30 1 -0.3633 0.8341 -0.6004 31 1 -0.3634 -0.9369 -0.4221 32 1 -1.2049 4.2980 -0.1876 33 1 4.0855 3.2920 0.1983 34 1 3.0125 6.2224 -0.1146 35 1 4.7407 5.7402 0.3119 36 1 4.9297 4.4770 -1.8795 37 1 3.2015 4.9588 -2.3067 38 1 2.3396 -1.9080 2.0824 39 1 0.6973 -2.0445 1.3829 40 1 2.7887 -6.8928 -0.6227 41 1 3.0470 -3.9117 -1.0646 42 1 1.2949 -4.2573 -1.0653 43 1 2.3799 -2.3665 -3.1356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047587256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:58 Heat of formation + Delta-G solvation = 20.011924 kcal Electronic energy + Delta-G solvation = -27676.596612 eV Core-core repulsion = 23726.548279 eV Total energy + Delta-G solvation = -3950.048333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.66278 -39.73030 -37.84190 -37.42118 -35.29454 -35.01025 -34.49845 -31.83480 -30.48781 -28.59118 -27.34683 -26.57550 -24.95270 -24.01570 -23.60145 -22.69254 -21.36707 -20.42756 -20.33285 -19.18595 -17.71377 -17.12197 -16.99888 -16.94906 -16.42276 -15.93337 -15.53227 -15.23155 -14.89121 -14.62932 -14.06846 -13.85023 -13.74881 -13.02132 -12.82728 -12.67656 -12.65203 -12.38559 -12.21202 -11.92629 -11.89442 -11.61791 -11.38268 -11.26407 -11.16806 -10.86808 -10.84698 -10.76462 -10.51656 -10.12949 -9.89742 -9.82786 -9.75175 -9.24243 -8.97934 -8.68194 -8.24408 -6.89633 -5.74472 -3.09498 0.90870 1.91726 2.28907 3.10359 3.30527 3.40012 3.45072 3.47208 3.58479 3.84044 4.13680 4.45643 4.49744 4.61709 4.66673 4.75663 4.90262 5.28544 5.29474 5.33923 5.39133 5.45761 5.46333 5.57771 5.61192 5.66951 5.72534 5.76875 5.91260 5.92124 5.94956 6.10449 6.16600 6.32665 6.55159 6.67158 6.92174 7.25891 7.37614 7.49597 7.63356 7.75468 8.18487 8.22411 8.31990 9.16224 9.76327 10.39847 11.36958 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.002997 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.280733 B = 9339.165361 C = 9552.921453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.582 5.582 3 C 0.600 3.400 4 O -0.534 6.534 5 C -0.058 4.058 6 N -0.456 5.456 7 C 0.168 3.832 8 O -0.200 6.200 9 C 0.070 3.930 10 C -0.085 4.085 11 C -0.169 4.169 12 C -0.157 4.157 13 C 0.133 3.867 14 H 0.115 0.885 15 C 0.133 3.867 16 N -0.599 5.599 17 C -0.229 4.229 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.154 3.846 26 C 0.065 3.935 27 H 0.057 0.943 28 O -0.561 6.561 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.254 0.746 33 H 0.158 0.842 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.027 0.973 40 H 0.253 0.747 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 22.747 -3.287 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.312 5.312 3 C 0.387 3.613 4 O -0.411 6.411 5 C -0.178 4.178 6 N -0.185 5.185 7 C -0.060 4.060 8 O -0.087 6.087 9 C 0.014 3.986 10 C -0.103 4.103 11 C -0.206 4.206 12 C -0.194 4.194 13 C 0.029 3.971 14 H 0.133 0.867 15 C 0.005 3.995 16 N -0.327 5.327 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.746 3.254 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.028 3.972 26 C 0.004 3.996 27 H 0.075 0.925 28 O -0.365 6.365 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.270 0.730 33 H 0.176 0.824 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.759 22.453 -2.803 23.122 hybrid contribution -0.158 -0.797 0.108 0.820 sum -4.917 21.656 -2.695 22.370 Atomic orbital electron populations 1.22205 0.78672 1.03663 1.02662 1.47512 1.07602 1.05147 1.70980 1.16700 0.85991 0.81703 0.76950 1.90764 1.12723 1.86434 1.51216 1.21455 0.89267 0.94782 1.12250 1.70960 1.13482 1.17227 1.16840 1.28136 0.90743 0.86127 1.00989 1.84311 1.15621 1.39377 1.69379 1.22589 0.89435 0.86876 0.99677 1.20827 0.86020 0.97891 1.05541 1.23085 1.03808 0.92867 1.00867 1.23078 1.03255 1.02060 0.91034 1.22448 0.98411 0.81010 0.95181 0.86663 1.21768 0.97765 0.85455 0.94469 1.44239 1.83544 1.03203 1.01707 1.19079 1.41438 0.86197 0.89033 0.90138 1.24820 1.01730 0.97668 0.96107 1.69934 1.55331 1.22513 1.09204 0.86065 0.77643 0.82245 0.79488 1.21567 1.21620 1.20592 1.21830 1.01852 0.89305 0.84186 1.23582 0.92890 0.97346 0.85749 0.92503 1.86490 1.62441 1.65509 1.22102 0.92678 0.88186 0.91449 0.73012 0.82431 0.88197 0.87482 0.87188 0.88473 0.93328 0.95527 0.93652 0.92131 0.93423 0.78006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 8.33 59.85 0.50 1.53 16 2 N -0.58 -10.25 2.91 -172.74 -0.50 -10.76 16 3 C 0.60 10.68 7.66 -12.53 -0.10 10.58 16 4 O -0.53 -10.67 14.25 5.26 0.07 -10.60 16 5 C -0.06 -0.84 6.68 -83.02 -0.55 -1.40 16 6 N -0.46 -5.55 7.82 -11.48 -0.09 -5.64 16 7 C 0.17 1.42 13.19 51.96 0.69 2.11 16 8 O -0.20 -2.03 10.50 6.49 0.07 -1.96 16 9 C 0.07 0.88 6.90 -35.08 -0.24 0.64 16 10 C -0.08 -0.95 5.66 -91.77 -0.52 -1.47 16 11 C -0.17 -1.36 10.18 -26.73 -0.27 -1.64 16 12 C -0.16 -1.40 10.23 -26.73 -0.27 -1.67 16 13 C 0.13 2.71 3.17 -65.77 -0.21 2.50 16 14 H 0.12 2.65 7.01 -51.93 -0.36 2.29 16 15 C 0.13 2.89 6.81 -2.53 -0.02 2.87 16 16 N -0.60 -15.57 3.39 -170.07 -0.58 -16.15 16 17 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -26.99 10.31 55.49 0.57 -26.42 16 21 Si 0.92 22.18 29.55 -169.99 -5.02 17.15 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.15 3.77 5.15 -3.07 -0.02 3.75 16 26 C 0.06 1.30 3.86 -24.90 -0.10 1.20 16 27 H 0.06 1.05 6.26 -51.93 -0.33 0.72 16 28 O -0.56 -10.78 13.39 -35.23 -0.47 -11.25 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.36 5.21 -51.93 -0.27 1.09 16 31 H 0.07 0.98 6.27 -51.93 -0.33 0.65 16 32 H 0.25 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.16 2.04 6.59 -51.93 -0.34 1.69 16 34 H 0.10 0.75 8.01 -51.93 -0.42 0.33 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.56 7.14 -51.93 -0.37 0.19 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.06 1.67 7.30 -51.93 -0.38 1.29 16 42 H 0.05 1.25 7.51 -51.92 -0.39 0.86 16 43 H 0.37 5.53 9.12 45.56 0.42 5.95 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -34.72 352.37 -6.85 -41.57 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.85 Total: 6.62 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -1.36 Total: 12.11 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.60 Total: -58.96 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.33 Total: -23.81 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.72 -6.85 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047587256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.581 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds