Wall clock time and date at job start Tue Mar 31 2020 13:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34766 * 120.00441 * 2 1 4 4 O 1.21618 * 120.00307 * 175.88807 * 3 2 1 5 5 C 1.47421 * 119.99839 * 355.89037 * 3 2 1 6 6 N 1.36062 * 126.45019 * 5.37537 * 5 3 2 7 7 C 1.29933 * 108.47840 * 179.82294 * 6 5 3 8 8 O 1.34052 * 109.24531 * 0.43903 * 7 6 5 9 9 C 1.34261 * 108.22286 * 359.72633 * 8 7 6 10 10 C 1.50703 * 126.52249 * 179.97438 * 9 8 7 11 11 C 1.52995 * 117.49946 * 8.64259 * 10 9 8 12 12 C 1.52999 * 117.49686 * 300.01994 * 10 9 8 13 13 C 1.46507 * 119.99696 * 179.97438 * 2 1 3 14 14 H 1.08997 * 110.88743 * 180.69772 * 13 2 1 15 15 C 1.54912 * 111.00560 * 304.58766 * 13 2 1 16 16 N 1.47428 * 104.83254 * 155.11987 * 15 13 2 17 17 C 1.36935 * 125.64590 * 155.83199 * 16 15 13 18 18 H 1.07997 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99748 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99761 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47208 * 89.99874 * 21 19 17 23 23 H 1.48501 * 109.46900 * 209.99892 * 21 19 17 24 24 H 1.48501 * 109.47278 * 329.99495 * 21 19 17 25 25 C 1.47022 * 108.69974 * 335.87205 * 16 15 13 26 26 C 1.54318 * 107.27542 * 1.05660 * 25 16 15 27 27 H 1.09002 * 110.72338 * 263.83478 * 26 25 16 28 28 O 1.42902 * 110.72291 * 140.55914 * 26 25 16 29 29 H 1.08996 * 109.47023 * 275.75098 * 1 2 3 30 30 H 1.09001 * 109.46762 * 35.74893 * 1 2 3 31 31 H 1.08997 * 109.47430 * 155.74600 * 1 2 3 32 32 H 1.08003 * 125.38226 * 180.16178 * 7 6 5 33 33 H 1.08996 * 115.54453 * 154.35076 * 10 9 8 34 34 H 1.09003 * 117.50092 * 0.02562 * 11 10 9 35 35 H 1.08998 * 117.49873 * 145.02339 * 11 10 9 36 36 H 1.09000 * 117.49535 * 214.97827 * 12 10 9 37 37 H 1.08997 * 117.49746 * 359.97438 * 12 10 9 38 38 H 1.08998 * 110.35916 * 273.95808 * 15 13 2 39 39 H 1.08999 * 110.36765 * 36.27939 * 15 13 2 40 40 H 0.96996 * 119.99980 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.88446 * 120.47668 * 25 16 15 42 42 H 1.09007 * 109.87990 * 241.64031 * 25 16 15 43 43 H 0.96706 * 113.99697 * 66.47267 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3528 1.1684 0.0755 5 6 1.4048 2.4422 -0.0915 6 7 0.0533 2.5995 -0.0784 7 6 -0.2146 3.8673 -0.1745 8 8 0.9323 4.5560 -0.2609 9 6 1.9511 3.6829 -0.2107 10 6 3.4199 4.0139 -0.2748 11 6 3.8150 5.4904 -0.2064 12 6 3.9289 4.7285 -1.5283 13 6 2.1975 -1.2688 0.0006 14 1 3.2737 -1.0963 0.0129 15 6 1.7642 -2.1596 1.1915 16 7 2.0624 -3.5376 0.7603 17 6 2.2935 -4.6013 1.5910 18 1 2.2647 -4.4663 2.6621 19 6 2.5649 -5.8533 1.0563 20 7 2.5995 -6.0179 -0.2491 21 14 2.8795 -7.3046 2.1894 22 1 1.5946 -7.9858 2.4897 23 1 3.8028 -8.2597 1.5257 24 1 3.4913 -6.8221 3.4536 25 6 2.0714 -3.5800 -0.7093 26 6 1.7892 -2.1482 -1.2108 27 1 0.7311 -2.0213 -1.4402 28 8 2.5951 -1.8438 -2.3510 29 1 -0.3633 0.1030 1.0225 30 1 -0.3633 0.8341 -0.6004 31 1 -0.3634 -0.9369 -0.4221 32 1 -1.2049 4.2980 -0.1876 33 1 4.0855 3.2920 0.1983 34 1 3.0125 6.2224 -0.1146 35 1 4.7407 5.7402 0.3119 36 1 4.9297 4.4770 -1.8795 37 1 3.2015 4.9588 -2.3067 38 1 2.3396 -1.9080 2.0824 39 1 0.6973 -2.0445 1.3829 40 1 2.7887 -6.8928 -0.6227 41 1 3.0470 -3.9117 -1.0646 42 1 1.2949 -4.2573 -1.0653 43 1 2.3799 -2.3665 -3.1356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047587256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:57 Heat of formation + Delta-G solvation = -7.086412 kcal Electronic energy + Delta-G solvation = -27677.771684 eV Core-core repulsion = 23726.548279 eV Total energy + Delta-G solvation = -3951.223405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.50555 -41.18500 -39.42990 -38.20645 -36.76399 -36.47478 -35.74033 -33.79777 -31.43790 -30.40189 -29.10761 -27.88064 -26.65629 -25.22442 -24.57840 -23.36349 -22.48562 -22.28140 -21.50777 -20.54380 -19.02797 -18.97487 -18.30101 -17.92213 -17.60198 -17.31031 -16.66828 -16.46071 -16.21475 -15.96851 -15.77722 -15.39535 -14.75410 -14.54767 -14.50846 -14.26994 -14.04662 -13.74915 -13.48370 -13.26982 -13.19884 -13.07423 -12.76132 -12.67709 -12.51527 -12.39584 -12.09317 -12.04760 -11.90434 -11.75022 -11.63375 -11.45762 -11.02822 -10.90660 -10.78443 -9.95722 -9.61267 -8.98585 -7.89267 -5.27658 -0.03581 1.05274 1.43741 1.46303 1.48320 1.56951 1.82214 2.12819 2.47122 2.81954 3.02246 3.11061 3.31805 3.32345 3.54275 3.61729 3.80200 3.83175 3.95864 3.99182 4.03896 4.11726 4.35540 4.38116 4.43431 4.46079 4.61761 4.68377 4.71412 4.75792 4.88069 4.92363 5.03520 5.10661 5.15320 5.30519 5.35046 5.40908 5.51703 5.63077 6.10454 6.21863 6.48202 6.81295 6.97815 7.02450 7.66593 8.29931 9.20576 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.002997 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.280733 B = 9339.165361 C = 9552.921453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.584 5.584 3 C 0.592 3.408 4 O -0.569 6.569 5 C -0.090 4.090 6 N -0.484 5.484 7 C 0.199 3.801 8 O -0.194 6.194 9 C 0.079 3.921 10 C -0.119 4.119 11 C -0.143 4.143 12 C -0.152 4.152 13 C 0.145 3.855 14 H 0.083 0.917 15 C 0.136 3.864 16 N -0.620 5.620 17 C -0.249 4.249 18 H 0.085 0.915 19 C -0.062 4.062 20 N -0.949 5.949 21 Si 0.984 3.016 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.166 3.834 26 C 0.085 3.915 27 H 0.084 0.916 28 O -0.570 6.570 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.310 0.690 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.249 0.751 41 H 0.021 0.979 42 H 0.026 0.974 43 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 25.239 -3.124 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.314 5.314 3 C 0.381 3.619 4 O -0.449 6.449 5 C -0.208 4.208 6 N -0.212 5.212 7 C -0.028 4.028 8 O -0.080 6.080 9 C 0.022 3.978 10 C -0.137 4.137 11 C -0.180 4.180 12 C -0.189 4.189 13 C 0.040 3.960 14 H 0.101 0.899 15 C 0.010 3.990 16 N -0.348 5.348 17 C -0.377 4.377 18 H 0.103 0.897 19 C -0.255 4.255 20 N -0.597 5.597 21 Si 0.811 3.189 22 H -0.208 1.208 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.040 3.960 26 C 0.024 3.976 27 H 0.101 0.899 28 O -0.377 6.377 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.325 0.675 33 H 0.149 0.851 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.044 0.956 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.608 24.961 -2.641 25.956 hybrid contribution 0.380 -1.447 0.048 1.497 sum -6.228 23.515 -2.593 24.463 Atomic orbital electron populations 1.22355 0.76594 1.04367 1.03495 1.47524 1.08672 1.04041 1.71188 1.17206 0.85900 0.82761 0.75996 1.90737 1.14369 1.87130 1.52648 1.21012 0.90603 0.93739 1.15477 1.70833 1.12018 1.19368 1.18986 1.29397 0.91763 0.84983 0.96707 1.84357 1.15613 1.38755 1.69324 1.22668 0.90292 0.86596 0.98262 1.20759 0.85382 0.99577 1.07994 1.23200 1.04558 0.90602 0.99616 1.23181 1.03536 1.01172 0.90996 1.21970 0.97012 0.82342 0.94652 0.89919 1.21833 0.98553 0.83853 0.94809 1.44500 1.83597 1.04418 1.02262 1.19470 1.41324 0.87183 0.89732 0.89692 1.25695 1.01862 1.00306 0.97644 1.70142 1.56097 1.22710 1.10787 0.85008 0.77472 0.78591 0.77803 1.20791 1.21994 1.19519 1.21573 0.98891 0.91735 0.83783 1.23314 0.94221 0.94142 0.85914 0.89861 1.86458 1.62723 1.65863 1.22691 0.91965 0.86679 0.91286 0.67514 0.85054 0.86948 0.85985 0.86615 0.87867 0.93970 0.93556 0.94134 0.96073 0.95601 0.75731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.03 8.33 127.77 1.06 3.10 16 2 N -0.58 -20.63 2.91 -818.68 -2.38 -23.01 16 3 C 0.59 21.50 7.66 86.66 0.66 22.17 16 4 O -0.57 -23.93 14.25 -4.09 -0.06 -23.98 16 5 C -0.09 -2.57 6.68 40.41 0.27 -2.30 16 6 N -0.48 -10.59 7.82 -305.15 -2.39 -12.97 16 7 C 0.20 2.56 13.19 130.52 1.72 4.29 16 8 O -0.19 -3.29 10.50 0.32 0.00 -3.29 16 9 C 0.08 1.88 6.90 25.19 0.17 2.06 16 10 C -0.12 -2.62 5.66 -11.54 -0.07 -2.69 16 11 C -0.14 -1.99 10.18 30.59 0.31 -1.68 16 12 C -0.15 -2.48 10.23 30.59 0.31 -2.17 16 13 C 0.15 6.06 3.17 46.38 0.15 6.21 16 14 H 0.08 4.01 7.01 -2.39 -0.02 3.99 16 15 C 0.14 6.02 6.81 86.86 0.59 6.61 16 16 N -0.62 -33.10 3.39 -691.98 -2.35 -35.45 16 17 C -0.25 -14.25 10.28 84.04 0.86 -13.39 16 18 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 19 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 20 N -0.95 -57.18 10.31 21.65 0.22 -56.96 16 21 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.17 8.43 5.15 86.73 0.45 8.88 16 26 C 0.08 3.43 3.86 31.78 0.12 3.55 16 27 H 0.08 2.97 6.26 -2.39 -0.01 2.96 16 28 O -0.57 -22.09 13.39 -148.98 -1.99 -24.09 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.12 2.90 5.21 -2.39 -0.01 2.89 16 31 H 0.07 1.87 6.27 -2.39 -0.01 1.86 16 32 H 0.31 -0.16 8.06 -2.91 -0.02 -0.18 16 33 H 0.13 3.61 6.59 -2.39 -0.02 3.59 16 34 H 0.11 1.31 8.01 -2.39 -0.02 1.29 16 35 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.90 7.14 -2.39 -0.02 1.88 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 41 H 0.02 1.22 7.30 -2.39 -0.02 1.21 16 42 H 0.03 1.41 7.51 -2.38 -0.02 1.39 16 43 H 0.39 11.56 9.12 -74.05 -0.68 10.89 16 Total: -1.00 -79.02 352.37 0.56 -78.46 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.38 Total: 21.56 kcal Atomic # 6 Polarization: 24.45 SS G_CDS: 7.09 Total: 31.55 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -6.89 Total: -128.39 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -2.05 Total: -51.36 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -79.02 0.56 -78.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047587256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.375 kcal (2) G-P(sol) polarization free energy of solvation -79.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds